Protein–RNA interactions for Protein: Q96RL7

VPS13A, Vacuolar protein sorting-associated protein 13A, humanhuman

Predictions only

Length 3,174 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13AQ96RL7 PPP1R1C-203ENST00000409702 1157 ntAPPRIS P1 TSL 1 (best) BASIC2.75□□□□□ -1.97
VPS13AQ96RL7 KATNBL1P2-201ENST00000433311 835 ntBASIC2.75□□□□□ -1.97
VPS13AQ96RL7 AC009396.3-201ENST00000555680 354 ntTSL 5 BASIC2.75□□□□□ -1.97
VPS13AQ96RL7 ANP32E-209ENST00000616917 2989 ntTSL 2 BASIC2.75□□□□□ -1.97
VPS13AQ96RL7 MACC1-202ENST00000400331 9159 ntAPPRIS P1 TSL 2 BASIC2.75□□□□□ -1.97
VPS13AQ96RL7 COPS2-202ENST00000388901 6628 ntAPPRIS P1 TSL 1 (best) BASIC2.75□□□□□ -1.97
VPS13AQ96RL7 OLFM3-206ENST00000536598 2801 ntTSL 5 BASIC2.75□□□□□ -1.97
VPS13AQ96RL7 MFSD8-233ENST00000641482 4860 ntBASIC2.74□□□□□ -1.97
VPS13AQ96RL7 AC092079.1-201ENST00000558620 1985 ntBASIC2.74□□□□□ -1.97
VPS13AQ96RL7 AL592435.1-201ENST00000416401 469 ntTSL 3 BASIC2.74□□□□□ -1.97
VPS13AQ96RL7 Z98742.3-201ENST00000418637 326 ntBASIC2.74□□□□□ -1.97
VPS13AQ96RL7 NDUFA6-201ENST00000470753 475 ntTSL 2 BASIC2.74□□□□□ -1.97
VPS13AQ96RL7 ACTG1P13-201ENST00000486987 1043 ntBASIC2.74□□□□□ -1.97
VPS13AQ96RL7 LINC02545-201ENST00000525381 306 ntTSL 3 BASIC2.74□□□□□ -1.97
VPS13AQ96RL7 MIR8070-201ENST00000616510 88 ntBASIC2.74□□□□□ -1.97
VPS13AQ96RL7 AC027290.2-201ENST00000623210 18662 ntBASIC2.74□□□□□ -1.97
VPS13AQ96RL7 CCNH-206ENST00000508855 2391 ntTSL 1 (best) BASIC2.74□□□□□ -1.97
VPS13AQ96RL7 ADGRL2-205ENST00000370717 5873 ntAPPRIS ALT2 TSL 5 BASIC2.74□□□□□ -1.97
VPS13AQ96RL7 ZNF117-201ENST00000282869 9080 ntAPPRIS P1 TSL 1 (best) BASIC2.74□□□□□ -1.97
VPS13AQ96RL7 RPS6KA6-204ENST00000620340 8169 ntTSL 5 BASIC2.74□□□□□ -1.97
VPS13AQ96RL7 Y_RNA.269-201ENST00000364685 89 ntBASIC2.74□□□□□ -1.97
VPS13AQ96RL7 HMGB1P15-201ENST00000453854 435 ntBASIC2.74□□□□□ -1.97
VPS13AQ96RL7 AP001025.2-201ENST00000490908 477 ntBASIC2.74□□□□□ -1.97
VPS13AQ96RL7 OR5G4P-201ENST00000525251 760 ntBASIC2.74□□□□□ -1.97
VPS13AQ96RL7 AC068389.4-201ENST00000531379 689 ntTSL 3 BASIC2.74□□□□□ -1.97
VPS13AQ96RL7 AC007954.1-201ENST00000554198 494 ntBASIC2.74□□□□□ -1.97
VPS13AQ96RL7 AC244517.3-201ENST00000616254 1235 ntBASIC2.74□□□□□ -1.97
VPS13AQ96RL7 MIR4727-201ENST00000622232 55 ntBASIC2.74□□□□□ -1.97
VPS13AQ96RL7 AC007218.2-201ENST00000636913 179 ntTSL 5 BASIC2.74□□□□□ -1.97
VPS13AQ96RL7 NOX4-205ENST00000424319 4184 ntTSL 5 BASIC2.74□□□□□ -1.97
VPS13AQ96RL7 CNTRL-201ENST00000238341 7431 ntAPPRIS P1 TSL 1 (best) BASIC2.74□□□□□ -1.97
VPS13AQ96RL7 FAM114A2-210ENST00000520313 1394 ntTSL 2 BASIC2.74□□□□□ -1.97
VPS13AQ96RL7 FANCD2-202ENST00000383807 5102 ntAPPRIS ALT2 TSL 1 (best) BASIC2.74□□□□□ -1.97
VPS13AQ96RL7 AC015813.1-203ENST00000585065 4722 ntTSL 2 BASIC2.74□□□□□ -1.97
VPS13AQ96RL7 AC104297.1-201ENST00000393779 870 ntBASIC2.73□□□□□ -1.97
VPS13AQ96RL7 FAM53B-AS1-201ENST00000432699 558 ntTSL 2 BASIC2.73□□□□□ -1.97
VPS13AQ96RL7 OR5H5P-201ENST00000503164 928 ntBASIC2.73□□□□□ -1.97
VPS13AQ96RL7 AC022809.1-201ENST00000579247 428 ntTSL 3 BASIC2.73□□□□□ -1.97
VPS13AQ96RL7 FASTKD1-205ENST00000453929 2791 ntTSL 2 BASIC2.73□□□□□ -1.97
VPS13AQ96RL7 SLCO1C1-208ENST00000545102 2868 ntTSL 2 BASIC2.73□□□□□ -1.97
VPS13AQ96RL7 ZMYM1-210ENST00000611874 4466 ntAPPRIS P1 TSL 2 BASIC2.73□□□□□ -1.97
VPS13AQ96RL7 PTPN22-201ENST00000359785 3654 ntAPPRIS P2 TSL 1 (best) BASIC2.73□□□□□ -1.97
VPS13AQ96RL7 OR4F17-202ENST00000585993 2669 ntAPPRIS P1 BASIC2.73□□□□□ -1.97
VPS13AQ96RL7 PEX5L-202ENST00000392649 8540 ntAPPRIS ALT2 TSL 5 BASIC2.73□□□□□ -1.97
VPS13AQ96RL7 Y_RNA.355-201ENST00000365462 98 ntBASIC2.73□□□□□ -1.97
VPS13AQ96RL7 RNU4-53P-201ENST00000410828 140 ntBASIC2.73□□□□□ -1.97
VPS13AQ96RL7 AL135786.1-201ENST00000415892 214 ntBASIC2.73□□□□□ -1.97
VPS13AQ96RL7 AL138789.1-201ENST00000425820 960 ntTSL 2 BASIC2.73□□□□□ -1.97
VPS13AQ96RL7 AC006989.1-201ENST00000427212 131 ntBASIC2.73□□□□□ -1.97
VPS13AQ96RL7 MRPS31P2-201ENST00000451581 518 ntBASIC2.73□□□□□ -1.97
VPS13AQ96RL7 MTCYBP14-201ENST00000457471 715 ntBASIC2.73□□□□□ -1.97
VPS13AQ96RL7 AC079296.1-202ENST00000521394 960 ntTSL 4 BASIC2.73□□□□□ -1.97
VPS13AQ96RL7 PDZD9-203ENST00000537222 1068 ntTSL 3 BASIC2.73□□□□□ -1.97
VPS13AQ96RL7 ALDH3A2-208ENST00000571163 590 ntTSL 5 BASIC2.73□□□□□ -1.97
VPS13AQ96RL7 SYT14P1-202ENST00000600441 1448 ntBASIC2.73□□□□□ -1.97
VPS13AQ96RL7 ESRRAP2-204ENST00000606337 280 ntTSL 5 BASIC2.73□□□□□ -1.97
VPS13AQ96RL7 LINC00458-206ENST00000607494 849 ntTSL 3 BASIC2.73□□□□□ -1.97
VPS13AQ96RL7 OR56A1-202ENST00000641423 6096 ntAPPRIS P1 BASIC2.73□□□□□ -1.97
VPS13AQ96RL7 OR4G1P-202ENST00000641173 1788 ntBASIC2.73□□□□□ -1.97
VPS13AQ96RL7 NOC3L-201ENST00000371361 3455 ntAPPRIS P1 TSL 1 (best) BASIC2.73□□□□□ -1.97
VPS13AQ96RL7 ZNF679-202ENST00000421025 1567 ntAPPRIS P1 TSL 1 (best) BASIC2.73□□□□□ -1.97
VPS13AQ96RL7 TMEM232-201ENST00000455884 2501 ntAPPRIS P2 TSL 2 BASIC2.73□□□□□ -1.97
VPS13AQ96RL7 SLCO1B1-201ENST00000256958 2229 ntAPPRIS P1 TSL 1 (best) BASIC2.73□□□□□ -1.97
VPS13AQ96RL7 SLC38A9-203ENST00000416547 2236 ntTSL 5 BASIC2.73□□□□□ -1.97
VPS13AQ96RL7 RNA5SP322-201ENST00000363617 119 ntBASIC2.73□□□□□ -1.97
VPS13AQ96RL7 AC079354.3-201ENST00000447111 311 ntTSL 2 BASIC2.73□□□□□ -1.97
VPS13AQ96RL7 AC004917.1-201ENST00000490856 575 ntTSL 4 BASIC2.73□□□□□ -1.97
VPS13AQ96RL7 AC005908.2-201ENST00000546078 530 ntTSL 3 BASIC2.73□□□□□ -1.97
VPS13AQ96RL7 SPAG5-AS1-202ENST00000424210 1551 ntTSL 2 BASIC2.72□□□□□ -1.97
VPS13AQ96RL7 YES1-203ENST00000577961 4554 ntTSL 5 BASIC2.72□□□□□ -1.97
VPS13AQ96RL7 DDX18P3-201ENST00000404856 2007 ntBASIC2.72□□□□□ -1.97
VPS13AQ96RL7 OR6C3-201ENST00000379667 936 ntAPPRIS P1 BASIC2.72□□□□□ -1.97
VPS13AQ96RL7 AL160275.2-201ENST00000412010 394 ntBASIC2.72□□□□□ -1.97
VPS13AQ96RL7 AP003465.1-201ENST00000520575 382 ntTSL 2 BASIC2.72□□□□□ -1.97
VPS13AQ96RL7 SIRT1-202ENST00000403579 3333 ntTSL 1 (best) BASIC2.72□□□□□ -1.97
VPS13AQ96RL7 OFD1P6Y-202ENST00000451061 2724 ntBASIC2.72□□□□□ -1.97
VPS13AQ96RL7 AL049830.3-201ENST00000555108 1991 ntTSL 1 (best) BASIC2.72□□□□□ -1.97
VPS13AQ96RL7 AC110754.1-201ENST00000399740 601 ntBASIC2.72□□□□□ -1.97
VPS13AQ96RL7 RPL7P25-201ENST00000404151 721 ntBASIC2.72□□□□□ -1.97
VPS13AQ96RL7 AL157709.1-201ENST00000412695 424 ntTSL 3 BASIC2.72□□□□□ -1.97
VPS13AQ96RL7 AC024084.1-201ENST00000440744 455 ntTSL 5 BASIC2.72□□□□□ -1.97
VPS13AQ96RL7 Z99127.3-201ENST00000448158 395 ntBASIC2.72□□□□□ -1.97
VPS13AQ96RL7 AC034195.1-202ENST00000451031 610 ntTSL 3 BASIC2.72□□□□□ -1.97
VPS13AQ96RL7 RPL23AP71-201ENST00000470966 469 ntBASIC2.72□□□□□ -1.97
VPS13AQ96RL7 RN7SKP272-201ENST00000516988 232 ntBASIC2.72□□□□□ -1.97
VPS13AQ96RL7 PAFAH1B2-206ENST00000530272 850 ntTSL 1 (best) BASIC2.72□□□□□ -1.97
VPS13AQ96RL7 CTSLP2-204ENST00000629029 392 ntBASIC2.72□□□□□ -1.97
VPS13AQ96RL7 KYNU-202ENST00000375773 1772 ntTSL 1 (best) BASIC2.72□□□□□ -1.97
VPS13AQ96RL7 TAB3P1-202ENST00000452645 1634 ntBASIC2.72□□□□□ -1.97
VPS13AQ96RL7 EYS-205ENST00000393380 5450 ntTSL 1 (best) BASIC2.72□□□□□ -1.97
VPS13AQ96RL7 SLCO1B7-201ENST00000421593 1923 ntAPPRIS P1 TSL 1 (best) BASIC2.72□□□□□ -1.97
VPS13AQ96RL7 CASC1-202ENST00000354189 2445 ntAPPRIS ALT2 TSL 1 (best) BASIC2.72□□□□□ -1.97
VPS13AQ96RL7 Y_RNA.540-201ENST00000384638 111 ntBASIC2.71□□□□□ -1.97
VPS13AQ96RL7 DSCR8-202ENST00000400477 534 ntAPPRIS ALT2 TSL 1 (best) BASIC2.71□□□□□ -1.97
VPS13AQ96RL7 TRAV37-201ENST00000553906 342 ntBASIC2.71□□□□□ -1.97
VPS13AQ96RL7 AL365400.2-201ENST00000605604 902 ntBASIC2.71□□□□□ -1.97
VPS13AQ96RL7 AC092442.1-201ENST00000636216 138 ntAPPRIS P1 TSL 5 BASIC2.71□□□□□ -1.97
VPS13AQ96RL7 DOPEY1-203ENST00000369739 7743 ntAPPRIS ALT1 TSL 1 (best) BASIC2.71□□□□□ -1.98
VPS13AQ96RL7 GABRG2-210ENST00000638772 7669 ntTSL 5 BASIC2.71□□□□□ -1.98
VPS13AQ96RL7 AC078817.1-201ENST00000492623 435 ntBASIC2.71□□□□□ -1.98
Retrieved 100 of 98,524 protein–RNA pairs in 116.3 ms