Protein–RNA interactions for Protein: Q96M95

CCDC42, Coiled-coil domain-containing protein 42, humanhuman

Predictions only

Length 316 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC42Q96M95 AC011611.1-201ENST00000552179 197 ntBASIC3.33□□□□□ -1.88
CCDC42Q96M95 AC015908.4-201ENST00000582334 575 ntTSL 4 BASIC3.33□□□□□ -1.88
CCDC42Q96M95 MIR4697-201ENST00000582977 78 ntBASIC3.33□□□□□ -1.88
CCDC42Q96M95 AC027514.2-201ENST00000591014 637 ntTSL 3 BASIC3.33□□□□□ -1.88
CCDC42Q96M95 LINC01539-206ENST00000593282 678 ntTSL 4 BASIC3.33□□□□□ -1.88
CCDC42Q96M95 AC011468.4-201ENST00000603942 409 ntBASIC3.33□□□□□ -1.88
CCDC42Q96M95 AC091488.1-201ENST00000604239 660 ntBASIC3.33□□□□□ -1.88
CCDC42Q96M95 ATF2-221ENST00000538946 1325 ntTSL 5 BASIC3.33□□□□□ -1.88
CCDC42Q96M95 CCDC158-202ENST00000434846 1728 ntTSL 1 (best) BASIC3.33□□□□□ -1.88
CCDC42Q96M95 AC110774.1-201ENST00000623567 2018 ntBASIC3.32□□□□□ -1.88
CCDC42Q96M95 YWHAZ-211ENST00000457309 3007 ntAPPRIS P1 TSL 2 BASIC3.32□□□□□ -1.88
CCDC42Q96M95 OR8K1-201ENST00000279783 1087 ntAPPRIS P1 BASIC3.32□□□□□ -1.88
CCDC42Q96M95 CLECL1-201ENST00000327839 670 ntAPPRIS P3 TSL 1 (best) BASIC3.32□□□□□ -1.88
CCDC42Q96M95 RNA5SP479-201ENST00000364858 117 ntBASIC3.32□□□□□ -1.88
CCDC42Q96M95 MIR490-201ENST00000384865 128 ntBASIC3.32□□□□□ -1.88
CCDC42Q96M95 MIR554-201ENST00000384874 96 ntBASIC3.32□□□□□ -1.88
CCDC42Q96M95 TRAJ17-201ENST00000390520 63 ntAPPRIS P1 BASIC3.32□□□□□ -1.88
CCDC42Q96M95 HMGN2P31-201ENST00000432430 273 ntBASIC3.32□□□□□ -1.88
CCDC42Q96M95 AL031663.1-201ENST00000437445 219 ntBASIC3.32□□□□□ -1.88
CCDC42Q96M95 MTND2P8-201ENST00000450555 1025 ntBASIC3.32□□□□□ -1.88
CCDC42Q96M95 AC011196.1-201ENST00000451816 595 ntTSL 2 BASIC3.32□□□□□ -1.88
CCDC42Q96M95 RPL21P10-201ENST00000463521 490 ntBASIC3.32□□□□□ -1.88
CCDC42Q96M95 AC073522.1-201ENST00000483312 377 ntBASIC3.32□□□□□ -1.88
CCDC42Q96M95 AC068587.1-201ENST00000483613 781 ntBASIC3.32□□□□□ -1.88
CCDC42Q96M95 DNAJC12-205ENST00000483798 769 ntTSL 3 BASIC3.32□□□□□ -1.88
CCDC42Q96M95 RN7SL20P-201ENST00000488827 297 ntBASIC3.32□□□□□ -1.88
CCDC42Q96M95 RN7SL633P-201ENST00000488974 297 ntBASIC3.32□□□□□ -1.88
CCDC42Q96M95 AC110794.1-201ENST00000505816 425 ntBASIC3.32□□□□□ -1.88
CCDC42Q96M95 MTND4LP22-201ENST00000508209 276 ntBASIC3.32□□□□□ -1.88
CCDC42Q96M95 AC022784.3-202ENST00000517816 826 ntTSL 3 BASIC3.32□□□□□ -1.88
CCDC42Q96M95 NECAB1-205ENST00000522820 811 ntTSL 2 BASIC3.32□□□□□ -1.88
CCDC42Q96M95 IL18-204ENST00000528832 795 ntAPPRIS P3 TSL 3 BASIC3.32□□□□□ -1.88
CCDC42Q96M95 ZNF415P1-201ENST00000582279 1166 ntBASIC3.32□□□□□ -1.88
CCDC42Q96M95 MAGOH2P-202ENST00000584384 429 ntBASIC3.32□□□□□ -1.88
CCDC42Q96M95 CCDC58P3-201ENST00000590792 430 ntBASIC3.32□□□□□ -1.88
CCDC42Q96M95 AC112503.1-201ENST00000608436 391 ntBASIC3.32□□□□□ -1.88
CCDC42Q96M95 AC100793.4-201ENST00000613683 429 ntBASIC3.32□□□□□ -1.88
CCDC42Q96M95 AC039056.2-201ENST00000622261 511 ntBASIC3.32□□□□□ -1.88
CCDC42Q96M95 MIR6810-201ENST00000622701 70 ntBASIC3.32□□□□□ -1.88
CCDC42Q96M95 AC007342.8-201ENST00000623278 678 ntBASIC3.32□□□□□ -1.88
CCDC42Q96M95 AC012442.3-202ENST00000636742 206 ntBASIC3.32□□□□□ -1.88
CCDC42Q96M95 CXCL11-201ENST00000306621 1606 ntAPPRIS P1 TSL 1 (best) BASIC3.32□□□□□ -1.88
CCDC42Q96M95 PIK3C2G-201ENST00000266497 4764 ntAPPRIS P1 TSL 1 (best) BASIC3.32□□□□□ -1.88
CCDC42Q96M95 AC110760.2-201ENST00000508031 2546 ntTSL 2 BASIC3.31□□□□□ -1.88
CCDC42Q96M95 XPOTP1-201ENST00000443317 2398 ntBASIC3.31□□□□□ -1.88
CCDC42Q96M95 MME-216ENST00000615825 5523 ntAPPRIS P1 TSL 1 (best) BASIC3.31□□□□□ -1.88
CCDC42Q96M95 GYPE-201ENST00000358615 1684 ntAPPRIS P1 TSL 1 (best) BASIC3.31□□□□□ -1.88
CCDC42Q96M95 NAMPT-202ENST00000354289 1213 ntTSL 1 (best) BASIC3.31□□□□□ -1.88
CCDC42Q96M95 RNA5SP189-201ENST00000364920 115 ntBASIC3.31□□□□□ -1.88
CCDC42Q96M95 AL078590.1-201ENST00000412602 479 ntTSL 3 BASIC3.31□□□□□ -1.88
CCDC42Q96M95 BMS1P22-201ENST00000414726 313 ntBASIC3.31□□□□□ -1.88
CCDC42Q96M95 AC091286.1-201ENST00000431233 461 ntBASIC3.31□□□□□ -1.88
CCDC42Q96M95 AL445259.1-202ENST00000434768 379 ntTSL 3 BASIC3.31□□□□□ -1.88
CCDC42Q96M95 AC239367.2-201ENST00000447309 705 ntBASIC3.31□□□□□ -1.88
CCDC42Q96M95 RPL31P20-201ENST00000449593 360 ntBASIC3.31□□□□□ -1.88
CCDC42Q96M95 LINC00456-201ENST00000453862 692 ntTSL 3 BASIC3.31□□□□□ -1.88
CCDC42Q96M95 AC121764.2-201ENST00000469806 587 ntTSL 2 BASIC3.31□□□□□ -1.88
CCDC42Q96M95 AC118282.1-201ENST00000506408 765 ntBASIC3.31□□□□□ -1.88
CCDC42Q96M95 PRELID3BP5-201ENST00000508612 460 ntBASIC3.31□□□□□ -1.88
CCDC42Q96M95 AC119751.1-201ENST00000513357 765 ntBASIC3.31□□□□□ -1.88
CCDC42Q96M95 SNORD116-30-201ENST00000516468 85 ntBASIC3.31□□□□□ -1.88
CCDC42Q96M95 RN7SKP234-201ENST00000517173 224 ntBASIC3.31□□□□□ -1.88
CCDC42Q96M95 TMEM87A-212ENST00000568432 750 ntTSL 3 BASIC3.31□□□□□ -1.88
CCDC42Q96M95 CKS1BP3-201ENST00000600888 237 ntBASIC3.31□□□□□ -1.88
CCDC42Q96M95 LINC01930-201ENST00000602672 870 ntTSL 5 BASIC3.31□□□□□ -1.88
CCDC42Q96M95 PRELID3BP8-201ENST00000604148 295 ntBASIC3.31□□□□□ -1.88
CCDC42Q96M95 AC092354.2-201ENST00000607786 514 ntBASIC3.31□□□□□ -1.88
CCDC42Q96M95 AC015726.3-201ENST00000624501 418 ntBASIC3.31□□□□□ -1.88
CCDC42Q96M95 MIS12-201ENST00000381165 2505 ntAPPRIS P1 TSL 1 (best) BASIC3.31□□□□□ -1.88
CCDC42Q96M95 AC108206.1-201ENST00000570186 4159 ntBASIC3.31□□□□□ -1.88
CCDC42Q96M95 BAZ2B-202ENST00000343439 2364 ntTSL 5 BASIC3.31□□□□□ -1.88
CCDC42Q96M95 KTN1-206ENST00000413890 4473 ntAPPRIS ALT2 TSL 5 BASIC3.31□□□□□ -1.88
CCDC42Q96M95 SPZ1-201ENST00000296739 1868 ntAPPRIS P2 BASIC3.3□□□□□ -1.88
CCDC42Q96M95 AL354733.2-209ENST00000589233 1434 ntTSL 2 BASIC3.3□□□□□ -1.88
CCDC42Q96M95 AL359715.4-201ENST00000606629 1436 ntBASIC3.3□□□□□ -1.88
CCDC42Q96M95 YWHAZ-219ENST00000522542 1394 ntTSL 2 BASIC3.3□□□□□ -1.88
CCDC42Q96M95 SOCS4-201ENST00000339298 6667 ntAPPRIS P1 TSL 1 (best) BASIC3.3□□□□□ -1.88
CCDC42Q96M95 ASPN-201ENST00000375543 2237 ntTSL 2 BASIC3.3□□□□□ -1.88
CCDC42Q96M95 IFNG-201ENST00000229135 1218 ntAPPRIS P1 TSL 1 (best) BASIC3.3□□□□□ -1.88
CCDC42Q96M95 C11orf74-201ENST00000334307 863 ntAPPRIS P3 TSL 1 (best) BASIC3.3□□□□□ -1.88
CCDC42Q96M95 RNU6-618P-201ENST00000363518 112 ntBASIC3.3□□□□□ -1.88
CCDC42Q96M95 RNU1-33P-201ENST00000364249 162 ntBASIC3.3□□□□□ -1.88
CCDC42Q96M95 RNU1-64P-201ENST00000365443 163 ntBASIC3.3□□□□□ -1.88
CCDC42Q96M95 SNORD15B-201ENST00000384714 146 ntBASIC3.3□□□□□ -1.88
CCDC42Q96M95 SUMO1-205ENST00000409205 534 ntTSL 2 BASIC3.3□□□□□ -1.88
CCDC42Q96M95 RN7SKP123-201ENST00000410732 291 ntBASIC3.3□□□□□ -1.88
CCDC42Q96M95 AC245052.5-201ENST00000416320 649 ntBASIC3.3□□□□□ -1.88
CCDC42Q96M95 LINC02263-202ENST00000420701 597 ntTSL 5 BASIC3.3□□□□□ -1.88
CCDC42Q96M95 AL034347.1-201ENST00000420766 835 ntTSL 3 BASIC3.3□□□□□ -1.88
CCDC42Q96M95 F10-AS1-201ENST00000424635 417 ntTSL 5 BASIC3.3□□□□□ -1.88
CCDC42Q96M95 AL159174.1-202ENST00000425588 442 ntTSL 3 BASIC3.3□□□□□ -1.88
CCDC42Q96M95 RPS24P8-201ENST00000431490 402 ntBASIC3.3□□□□□ -1.88
CCDC42Q96M95 AC090617.2-201ENST00000433167 404 ntTSL 3 BASIC3.3□□□□□ -1.88
CCDC42Q96M95 AC005772.1-201ENST00000446671 976 ntTSL 1 (best) BASIC3.3□□□□□ -1.88
CCDC42Q96M95 HRAT17-201ENST00000447785 547 ntTSL 4 BASIC3.3□□□□□ -1.88
CCDC42Q96M95 NPM1P49-201ENST00000448027 714 ntBASIC3.3□□□□□ -1.88
CCDC42Q96M95 AC112204.2-201ENST00000503269 374 ntTSL 2 BASIC3.3□□□□□ -1.88
CCDC42Q96M95 AC147055.1-201ENST00000509261 750 ntBASIC3.3□□□□□ -1.88
CCDC42Q96M95 TMEM248P1-201ENST00000510579 951 ntBASIC3.3□□□□□ -1.88
CCDC42Q96M95 PTGES3P3-201ENST00000511479 482 ntBASIC3.3□□□□□ -1.88
Retrieved 100 of 98,524 protein–RNA pairs in 93.7 ms