Protein–RNA interactions for Protein: Q96JC1

VPS39, Vam6/Vps39-like protein, humanhuman

Predictions only

Length 886 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39Q96JC1 AL354976.1-201ENST00000613843 387 ntBASIC3.78□□□□□ -1.8
VPS39Q96JC1 MIR6500-201ENST00000622700 86 ntBASIC3.78□□□□□ -1.8
VPS39Q96JC1 AC106730.3-201ENST00000624568 641 ntBASIC3.78□□□□□ -1.8
VPS39Q96JC1 ZNF439-201ENST00000304030 2622 ntAPPRIS P1 TSL 1 (best) BASIC3.78□□□□□ -1.8
VPS39Q96JC1 EVI5-201ENST00000370331 7403 ntAPPRIS P3 TSL 1 (best) BASIC3.78□□□□□ -1.8
VPS39Q96JC1 LRRC49-222ENST00000560158 1898 ntTSL 5 BASIC3.77□□□□□ -1.81
VPS39Q96JC1 PRO1804-201ENST00000623780 2050 ntBASIC3.77□□□□□ -1.81
VPS39Q96JC1 KMT2E-216ENST00000622386 1588 ntTSL 5 BASIC3.77□□□□□ -1.81
VPS39Q96JC1 RAD21-210ENST00000523986 2506 ntTSL 2 BASIC3.77□□□□□ -1.81
VPS39Q96JC1 MIR16-2-201ENST00000362117 81 ntBASIC3.77□□□□□ -1.81
VPS39Q96JC1 RNU6-339P-201ENST00000384310 107 ntBASIC3.77□□□□□ -1.81
VPS39Q96JC1 RHEBP3-201ENST00000411920 351 ntBASIC3.77□□□□□ -1.81
VPS39Q96JC1 AL360093.1-201ENST00000420237 1126 ntTSL 1 (best) BASIC3.77□□□□□ -1.81
VPS39Q96JC1 AC233981.1-201ENST00000423224 461 ntBASIC3.77□□□□□ -1.81
VPS39Q96JC1 RPP40P1-201ENST00000426762 456 ntBASIC3.77□□□□□ -1.81
VPS39Q96JC1 UBE2D3P3-201ENST00000426992 425 ntBASIC3.77□□□□□ -1.81
VPS39Q96JC1 AL365396.1-201ENST00000430854 671 ntBASIC3.77□□□□□ -1.81
VPS39Q96JC1 LINC01802-201ENST00000438824 523 ntTSL 3 BASIC3.77□□□□□ -1.81
VPS39Q96JC1 AC018359.1-201ENST00000442567 574 ntTSL 4 BASIC3.77□□□□□ -1.81
VPS39Q96JC1 AC004160.1-211ENST00000445839 565 ntTSL 4 BASIC3.77□□□□□ -1.81
VPS39Q96JC1 AC018731.1-201ENST00000447078 576 ntTSL 4 BASIC3.77□□□□□ -1.81
VPS39Q96JC1 SNAP25-AS1-204ENST00000451151 867 ntTSL 2 BASIC3.77□□□□□ -1.81
VPS39Q96JC1 SLC31A1P1-201ENST00000451221 567 ntBASIC3.77□□□□□ -1.81
VPS39Q96JC1 MTCO3P16-201ENST00000454456 754 ntBASIC3.77□□□□□ -1.81
VPS39Q96JC1 CYCSP20-201ENST00000473154 315 ntBASIC3.77□□□□□ -1.81
VPS39Q96JC1 KLHL6-AS1-201ENST00000491676 503 ntTSL 2 BASIC3.77□□□□□ -1.81
VPS39Q96JC1 OR5H3P-201ENST00000502817 919 ntBASIC3.77□□□□□ -1.81
VPS39Q96JC1 MTCO3P44-201ENST00000510977 541 ntBASIC3.77□□□□□ -1.81
VPS39Q96JC1 AC092593.2-201ENST00000513866 913 ntBASIC3.77□□□□□ -1.81
VPS39Q96JC1 MTCO1P35-201ENST00000515270 228 ntBASIC3.77□□□□□ -1.81
VPS39Q96JC1 SNORA31.20-201ENST00000517111 133 ntBASIC3.77□□□□□ -1.81
VPS39Q96JC1 MIR2116-201ENST00000517221 80 ntBASIC3.77□□□□□ -1.81
VPS39Q96JC1 ALKBH3-AS1-202ENST00000527960 547 ntTSL 4 BASIC3.77□□□□□ -1.81
VPS39Q96JC1 SMILR-201ENST00000533992 553 ntTSL 4 BASIC3.77□□□□□ -1.81
VPS39Q96JC1 AL132780.1-201ENST00000548819 556 ntTSL 4 BASIC3.77□□□□□ -1.81
VPS39Q96JC1 AL359238.1-201ENST00000557770 744 ntTSL 3 BASIC3.77□□□□□ -1.81
VPS39Q96JC1 AC023824.3-201ENST00000569003 562 ntBASIC3.77□□□□□ -1.81
VPS39Q96JC1 AC021517.1-203ENST00000590257 421 ntTSL 3 BASIC3.77□□□□□ -1.81
VPS39Q96JC1 ZNF836-203ENST00000597065 808 ntTSL 1 (best) BASIC3.77□□□□□ -1.81
VPS39Q96JC1 TEX41-222ENST00000597173 1134 ntTSL 1 (best) BASIC3.77□□□□□ -1.81
VPS39Q96JC1 AC015726.1-201ENST00000602353 681 ntBASIC3.77□□□□□ -1.81
VPS39Q96JC1 AL163642.2-201ENST00000604722 1019 ntBASIC3.77□□□□□ -1.81
VPS39Q96JC1 AL034351.1-201ENST00000605288 668 ntBASIC3.77□□□□□ -1.81
VPS39Q96JC1 AL008729.1-201ENST00000606627 553 ntTSL 4 BASIC3.77□□□□□ -1.81
VPS39Q96JC1 MIR8084-201ENST00000614105 89 ntBASIC3.77□□□□□ -1.81
VPS39Q96JC1 AC068722.2-201ENST00000618734 544 ntBASIC3.77□□□□□ -1.81
VPS39Q96JC1 AL590227.1-201ENST00000622616 315 ntTSL 5 BASIC3.77□□□□□ -1.81
VPS39Q96JC1 BX088723.1-201ENST00000637785 708 ntTSL 5 BASIC3.77□□□□□ -1.81
VPS39Q96JC1 SULT1B1-201ENST00000310613 7115 ntAPPRIS P1 TSL 1 (best) BASIC3.77□□□□□ -1.81
VPS39Q96JC1 KIAA1109-203ENST00000388738 15574 ntAPPRIS P1 TSL 1 (best) BASIC3.77□□□□□ -1.81
VPS39Q96JC1 AC020571.1-202ENST00000433933 1413 ntTSL 1 (best) BASIC3.77□□□□□ -1.81
VPS39Q96JC1 RAD17-202ENST00000305138 3164 ntTSL 1 (best) BASIC3.77□□□□□ -1.81
VPS39Q96JC1 AC004925.1-201ENST00000624256 2706 ntBASIC3.77□□□□□ -1.81
VPS39Q96JC1 AC073055.1-201ENST00000456901 1621 ntBASIC3.77□□□□□ -1.81
VPS39Q96JC1 MACF1-201ENST00000289893 19141 ntTSL 5 BASIC3.77□□□□□ -1.81
VPS39Q96JC1 AC079160.1-202ENST00000508406 2795 ntTSL 5 BASIC3.76□□□□□ -1.81
VPS39Q96JC1 RMDN2-205ENST00000407257 2280 ntTSL 5 BASIC3.76□□□□□ -1.81
VPS39Q96JC1 TTC41P-203ENST00000548527 1475 ntTSL 5 BASIC3.76□□□□□ -1.81
VPS39Q96JC1 RNU6-50P-201ENST00000362356 103 ntBASIC3.76□□□□□ -1.81
VPS39Q96JC1 PARD3-204ENST00000374768 799 ntTSL 3 BASIC3.76□□□□□ -1.81
VPS39Q96JC1 MEIG1-202ENST00000407572 625 ntAPPRIS P1 TSL 2 BASIC3.76□□□□□ -1.81
VPS39Q96JC1 MOB1AP1-201ENST00000430903 535 ntBASIC3.76□□□□□ -1.81
VPS39Q96JC1 NEK4P1-201ENST00000433383 879 ntBASIC3.76□□□□□ -1.81
VPS39Q96JC1 C4orf26-202ENST00000435974 560 ntTSL 2 BASIC3.76□□□□□ -1.81
VPS39Q96JC1 AC009950.1-206ENST00000445199 517 ntTSL 3 BASIC3.76□□□□□ -1.81
VPS39Q96JC1 AC079354.3-201ENST00000447111 311 ntTSL 2 BASIC3.76□□□□□ -1.81
VPS39Q96JC1 AC005002.1-201ENST00000447458 540 ntBASIC3.76□□□□□ -1.81
VPS39Q96JC1 HMGB1P15-201ENST00000453854 435 ntBASIC3.76□□□□□ -1.81
VPS39Q96JC1 FPGT-203ENST00000467578 601 ntTSL 2 BASIC3.76□□□□□ -1.81
VPS39Q96JC1 LINC01612-201ENST00000504509 469 ntTSL 3 BASIC3.76□□□□□ -1.81
VPS39Q96JC1 MND1-203ENST00000504860 638 ntTSL 1 (best) BASIC3.76□□□□□ -1.81
VPS39Q96JC1 AC016687.2-203ENST00000506650 578 ntTSL 3 BASIC3.76□□□□□ -1.81
VPS39Q96JC1 AC093772.1-201ENST00000513519 506 ntTSL 2 BASIC3.76□□□□□ -1.81
VPS39Q96JC1 RNU6-334P-201ENST00000517072 102 ntBASIC3.76□□□□□ -1.81
VPS39Q96JC1 NRG1-IT3-201ENST00000519023 505 ntTSL 3 BASIC3.76□□□□□ -1.81
VPS39Q96JC1 AC104248.1-202ENST00000524134 486 ntTSL 5 BASIC3.76□□□□□ -1.81
VPS39Q96JC1 AP000462.1-201ENST00000535704 818 ntTSL 3 BASIC3.76□□□□□ -1.81
VPS39Q96JC1 MRPL51-207ENST00000543959 472 ntTSL 3 BASIC3.76□□□□□ -1.81
VPS39Q96JC1 AL121766.1-201ENST00000547436 487 ntBASIC3.76□□□□□ -1.81
VPS39Q96JC1 OR6C68-201ENST00000548615 939 ntAPPRIS P1 BASIC3.76□□□□□ -1.81
VPS39Q96JC1 AC006960.3-201ENST00000561845 705 ntBASIC3.76□□□□□ -1.81
VPS39Q96JC1 AC025588.3-201ENST00000604182 274 ntBASIC3.76□□□□□ -1.81
VPS39Q96JC1 AC026741.1-201ENST00000605892 482 ntBASIC3.76□□□□□ -1.81
VPS39Q96JC1 SNORA62.6-201ENST00000606322 83 ntBASIC3.76□□□□□ -1.81
VPS39Q96JC1 AC092653.1-201ENST00000608509 531 ntBASIC3.76□□□□□ -1.81
VPS39Q96JC1 AC092683.1-209ENST00000612970 1105 ntTSL 5 BASIC3.76□□□□□ -1.81
VPS39Q96JC1 AC105227.2-201ENST00000615075 605 ntBASIC3.76□□□□□ -1.81
VPS39Q96JC1 AC253576.2-201ENST00000618815 580 ntBASIC3.76□□□□□ -1.81
VPS39Q96JC1 PLCE1-AS2-213ENST00000620469 432 ntTSL 5 BASIC3.76□□□□□ -1.81
VPS39Q96JC1 SMARCA2-229ENST00000634781 1106 ntTSL 1 (best) BASIC3.76□□□□□ -1.81
VPS39Q96JC1 OR6C71P-202ENST00000641886 1107 ntBASIC3.76□□□□□ -1.81
VPS39Q96JC1 CLCA4-201ENST00000370563 3211 ntAPPRIS P1 TSL 1 (best) BASIC3.76□□□□□ -1.81
VPS39Q96JC1 DTHD1-205ENST00000507598 2606 ntTSL 1 (best) BASIC3.76□□□□□ -1.81
VPS39Q96JC1 OR2L3-201ENST00000359959 2792 ntAPPRIS P1 BASIC3.76□□□□□ -1.81
VPS39Q96JC1 MGP-203ENST00000539261 1405 ntAPPRIS P1 TSL 1 (best) BASIC3.76□□□□□ -1.81
VPS39Q96JC1 ZNF99-201ENST00000397104 3114 ntAPPRIS P1 TSL 5 BASIC3.76□□□□□ -1.81
VPS39Q96JC1 RNF180-202ENST00000389100 4906 ntAPPRIS P1 TSL 1 (best) BASIC3.76□□□□□ -1.81
VPS39Q96JC1 TAF7L-201ENST00000324762 2107 ntAPPRIS ALT2 TSL 2 BASIC3.76□□□□□ -1.81
VPS39Q96JC1 LINC00690-201ENST00000429949 1365 ntTSL 1 (best) BASIC3.76□□□□□ -1.81
VPS39Q96JC1 LINC02493-201ENST00000509964 1704 ntTSL 1 (best) BASIC3.75□□□□□ -1.81
Retrieved 100 of 98,524 protein–RNA pairs in 463.4 ms