Protein–RNA interactions for Protein: Q3KNS1

PTCHD3, Patched domain-containing protein 3, humanhuman

Predictions only

Length 767 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD3Q3KNS1 AP001360.2-201ENST00000534423 562 ntTSL 4 BASIC4.58□□□□□ -1.68
PTCHD3Q3KNS1 AC107023.1-201ENST00000552757 356 ntTSL 5 BASIC4.58□□□□□ -1.68
PTCHD3Q3KNS1 TIMM9-208ENST00000556007 746 ntTSL 3 BASIC4.58□□□□□ -1.68
PTCHD3Q3KNS1 AC066612.2-201ENST00000559875 695 ntTSL 2 BASIC4.58□□□□□ -1.68
PTCHD3Q3KNS1 AC005899.1-201ENST00000584125 563 ntTSL 5 BASIC4.58□□□□□ -1.68
PTCHD3Q3KNS1 AC097467.3-207ENST00000602249 725 ntTSL 5 BASIC4.58□□□□□ -1.68
PTCHD3Q3KNS1 RNF138P2-201ENST00000603490 592 ntBASIC4.58□□□□□ -1.68
PTCHD3Q3KNS1 IMMP1LP1-201ENST00000605170 488 ntBASIC4.58□□□□□ -1.68
PTCHD3Q3KNS1 SEC23A-215ENST00000625395 261 ntTSL 5 BASIC4.58□□□□□ -1.68
PTCHD3Q3KNS1 PTPN13-201ENST00000316707 7546 ntAPPRIS ALT2 TSL 1 (best) BASIC4.58□□□□□ -1.68
PTCHD3Q3KNS1 NAIP-210ENST00000523981 4543 ntTSL 1 (best) BASIC4.58□□□□□ -1.68
PTCHD3Q3KNS1 AP001273.1-201ENST00000624493 3152 ntBASIC4.58□□□□□ -1.68
PTCHD3Q3KNS1 STAG2-203ENST00000371145 4393 ntAPPRIS ALT1 TSL 1 (best) BASIC4.58□□□□□ -1.68
PTCHD3Q3KNS1 CPB2-201ENST00000181383 1717 ntAPPRIS P1 TSL 1 (best) BASIC4.58□□□□□ -1.68
PTCHD3Q3KNS1 ARHGAP42P3-201ENST00000443989 2508 ntBASIC4.57□□□□□ -1.68
PTCHD3Q3KNS1 ERGIC2-212ENST00000611644 4961 ntTSL 5 BASIC4.57□□□□□ -1.68
PTCHD3Q3KNS1 PAN3-202ENST00000399613 4940 ntAPPRIS ALT2 TSL 5 BASIC4.57□□□□□ -1.68
PTCHD3Q3KNS1 AL355306.2-205ENST00000635395 1646 ntTSL 5 BASIC4.57□□□□□ -1.68
PTCHD3Q3KNS1 ROBO2-213ENST00000614793 7662 ntTSL 5 BASIC4.57□□□□□ -1.68
PTCHD3Q3KNS1 ACKR4-201ENST00000249887 1914 ntAPPRIS P1 TSL 1 (best) BASIC4.57□□□□□ -1.68
PTCHD3Q3KNS1 COX7B2-201ENST00000355591 542 ntAPPRIS P2 TSL 1 (best) BASIC4.57□□□□□ -1.68
PTCHD3Q3KNS1 Y_RNA.517-201ENST00000384551 106 ntBASIC4.57□□□□□ -1.68
PTCHD3Q3KNS1 RNU6-146P-201ENST00000384602 108 ntBASIC4.57□□□□□ -1.68
PTCHD3Q3KNS1 GLULP6-201ENST00000399502 913 ntBASIC4.57□□□□□ -1.68
PTCHD3Q3KNS1 ZNF603P-201ENST00000405613 487 ntBASIC4.57□□□□□ -1.68
PTCHD3Q3KNS1 RN7SKP56-201ENST00000410513 331 ntBASIC4.57□□□□□ -1.68
PTCHD3Q3KNS1 RN7SKP106-201ENST00000410832 272 ntBASIC4.57□□□□□ -1.68
PTCHD3Q3KNS1 AL591848.1-201ENST00000413092 322 ntBASIC4.57□□□□□ -1.68
PTCHD3Q3KNS1 AF274854.1-201ENST00000413236 615 ntBASIC4.57□□□□□ -1.68
PTCHD3Q3KNS1 RPL7P30-201ENST00000420888 709 ntBASIC4.57□□□□□ -1.68
PTCHD3Q3KNS1 EBLN1-201ENST00000422359 1208 ntAPPRIS P1 BASIC4.57□□□□□ -1.68
PTCHD3Q3KNS1 FABP7P1-201ENST00000424004 391 ntBASIC4.57□□□□□ -1.68
PTCHD3Q3KNS1 AL596220.1-202ENST00000429768 314 ntTSL 3 BASIC4.57□□□□□ -1.68
PTCHD3Q3KNS1 RPL23AP74-201ENST00000437246 471 ntBASIC4.57□□□□□ -1.68
PTCHD3Q3KNS1 RPS26P2-201ENST00000440331 348 ntBASIC4.57□□□□□ -1.68
PTCHD3Q3KNS1 MTCO1P27-201ENST00000448269 226 ntBASIC4.57□□□□□ -1.68
PTCHD3Q3KNS1 AC009365.2-201ENST00000453078 799 ntTSL 3 BASIC4.57□□□□□ -1.68
PTCHD3Q3KNS1 AL513533.1-201ENST00000453728 415 ntBASIC4.57□□□□□ -1.68
PTCHD3Q3KNS1 CXorf51A-201ENST00000458472 431 ntAPPRIS P1 TSL 2 BASIC4.57□□□□□ -1.68
PTCHD3Q3KNS1 AC026410.2-201ENST00000460281 156 ntBASIC4.57□□□□□ -1.68
PTCHD3Q3KNS1 SATB1-216ENST00000491519 1000 ntTSL 2 BASIC4.57□□□□□ -1.68
PTCHD3Q3KNS1 AC093864.1-201ENST00000504555 745 ntTSL 5 BASIC4.57□□□□□ -1.68
PTCHD3Q3KNS1 AC008572.1-201ENST00000507269 442 ntTSL 5 BASIC4.57□□□□□ -1.68
PTCHD3Q3KNS1 LINC02229-201ENST00000508486 661 ntTSL 3 BASIC4.57□□□□□ -1.68
PTCHD3Q3KNS1 AL117351.2-201ENST00000513571 157 ntBASIC4.57□□□□□ -1.68
PTCHD3Q3KNS1 RNU6-405P-201ENST00000516637 110 ntBASIC4.57□□□□□ -1.68
PTCHD3Q3KNS1 MTND1P5-201ENST00000517906 940 ntBASIC4.57□□□□□ -1.68
PTCHD3Q3KNS1 AC104986.1-201ENST00000517978 436 ntBASIC4.57□□□□□ -1.68
PTCHD3Q3KNS1 AC079209.1-201ENST00000519412 820 ntTSL 3 BASIC4.57□□□□□ -1.68
PTCHD3Q3KNS1 RAB9BP1-201ENST00000519581 626 ntBASIC4.57□□□□□ -1.68
PTCHD3Q3KNS1 OR4A45P-201ENST00000529954 901 ntBASIC4.57□□□□□ -1.68
PTCHD3Q3KNS1 AC055878.1-201ENST00000531858 281 ntTSL 3 BASIC4.57□□□□□ -1.68
PTCHD3Q3KNS1 AC008127.2-201ENST00000549925 1075 ntBASIC4.57□□□□□ -1.68
PTCHD3Q3KNS1 AC141257.3-201ENST00000572906 215 ntBASIC4.57□□□□□ -1.68
PTCHD3Q3KNS1 MIR4504-201ENST00000577413 92 ntBASIC4.57□□□□□ -1.68
PTCHD3Q3KNS1 MAPKAPK5-AS1-205ENST00000590479 543 ntTSL 2 BASIC4.57□□□□□ -1.68
PTCHD3Q3KNS1 RPL27-207ENST00000590864 569 ntTSL 2 BASIC4.57□□□□□ -1.68
PTCHD3Q3KNS1 AC068790.4-201ENST00000602474 263 ntBASIC4.57□□□□□ -1.68
PTCHD3Q3KNS1 AC080013.4-201ENST00000607624 649 ntBASIC4.57□□□□□ -1.68
PTCHD3Q3KNS1 MESTIT1_2.1-201ENST00000616328 235 ntBASIC4.57□□□□□ -1.68
PTCHD3Q3KNS1 Metazoa_SRP.193-201ENST00000622007 277 ntBASIC4.57□□□□□ -1.68
PTCHD3Q3KNS1 OR10K1-203ENST00000641432 3775 ntAPPRIS P1 BASIC4.57□□□□□ -1.68
PTCHD3Q3KNS1 GLCE-201ENST00000261858 5037 ntAPPRIS P1 TSL 1 (best) BASIC4.57□□□□□ -1.68
PTCHD3Q3KNS1 ZZZ3-202ENST00000370801 4328 ntAPPRIS P1 TSL 1 (best) BASIC4.57□□□□□ -1.68
PTCHD3Q3KNS1 HIPK3-204ENST00000525975 3668 ntAPPRIS P1 TSL 1 (best) BASIC4.57□□□□□ -1.68
PTCHD3Q3KNS1 C21orf91-201ENST00000284881 5433 ntAPPRIS P4 TSL 2 BASIC4.57□□□□□ -1.68
PTCHD3Q3KNS1 ZFRP1-201ENST00000457579 2970 ntBASIC4.57□□□□□ -1.68
PTCHD3Q3KNS1 RBBP6-202ENST00000348022 5739 ntTSL 1 (best) BASIC4.57□□□□□ -1.68
PTCHD3Q3KNS1 C9orf72-203ENST00000380003 3200 ntAPPRIS P1 TSL 1 (best) BASIC4.57□□□□□ -1.68
PTCHD3Q3KNS1 ABCA12-201ENST00000272895 9100 ntAPPRIS P1 TSL 1 (best) BASIC4.57□□□□□ -1.68
PTCHD3Q3KNS1 PIK3CB-214ENST00000544716 3181 ntTSL 1 (best) BASIC4.57□□□□□ -1.68
PTCHD3Q3KNS1 POSTN-210ENST00000541481 3113 ntTSL 1 (best) BASIC4.57□□□□□ -1.68
PTCHD3Q3KNS1 DYTN-201ENST00000452335 2051 ntAPPRIS P1 TSL 1 (best) BASIC4.57□□□□□ -1.68
PTCHD3Q3KNS1 RASA1-203ENST00000506290 3009 ntAPPRIS ALT2 TSL 2 BASIC4.56□□□□□ -1.68
PTCHD3Q3KNS1 RBMS3-205ENST00000434693 8540 ntTSL 5 BASIC4.56□□□□□ -1.68
PTCHD3Q3KNS1 CCDC68-201ENST00000337363 1457 ntAPPRIS P1 TSL 2 BASIC4.56□□□□□ -1.68
PTCHD3Q3KNS1 CD84-206ENST00000368054 8181 ntAPPRIS P3 TSL 1 (best) BASIC4.56□□□□□ -1.68
PTCHD3Q3KNS1 CTSS-201ENST00000368985 4107 ntAPPRIS P1 TSL 1 (best) BASIC4.56□□□□□ -1.68
PTCHD3Q3KNS1 MTND4P16-201ENST00000466108 1367 ntBASIC4.56□□□□□ -1.68
PTCHD3Q3KNS1 ERCC6-202ENST00000374127 1782 ntBASIC4.56□□□□□ -1.68
PTCHD3Q3KNS1 KLRC1-201ENST00000347831 1332 ntAPPRIS ALT2 TSL 1 (best) BASIC4.56□□□□□ -1.68
PTCHD3Q3KNS1 MGST1-207ENST00000535309 1331 ntTSL 1 (best) BASIC4.56□□□□□ -1.68
PTCHD3Q3KNS1 ATF2-221ENST00000538946 1325 ntTSL 5 BASIC4.56□□□□□ -1.68
PTCHD3Q3KNS1 SCN1A-220ENST00000641603 12506 ntBASIC4.56□□□□□ -1.68
PTCHD3Q3KNS1 C9orf153-204ENST00000613665 1738 ntAPPRIS P2 TSL 2 BASIC4.56□□□□□ -1.68
PTCHD3Q3KNS1 LINC00301-201ENST00000320202 852 ntTSL 2 BASIC4.56□□□□□ -1.68
PTCHD3Q3KNS1 IL18R1-202ENST00000334376 537 ntTSL 1 (best) BASIC4.56□□□□□ -1.68
PTCHD3Q3KNS1 IVNS1ABP-201ENST00000367497 746 ntTSL 5 BASIC4.56□□□□□ -1.68
PTCHD3Q3KNS1 CARD16-202ENST00000375706 686 ntAPPRIS P1 TSL 1 (best) BASIC4.56□□□□□ -1.68
PTCHD3Q3KNS1 RNA5SP332-201ENST00000391063 115 ntBASIC4.56□□□□□ -1.68
PTCHD3Q3KNS1 RPS4XP9-201ENST00000405151 780 ntBASIC4.56□□□□□ -1.68
PTCHD3Q3KNS1 RN7SKP266-201ENST00000410232 287 ntBASIC4.56□□□□□ -1.68
PTCHD3Q3KNS1 FGF12-AS1-201ENST00000414920 580 ntTSL 4 BASIC4.56□□□□□ -1.68
PTCHD3Q3KNS1 AP000432.1-201ENST00000416641 516 ntTSL 3 BASIC4.56□□□□□ -1.68
PTCHD3Q3KNS1 AC005009.1-201ENST00000423979 269 ntTSL 2 BASIC4.56□□□□□ -1.68
PTCHD3Q3KNS1 EIF1AX-AS1-201ENST00000424026 378 ntTSL 5 BASIC4.56□□□□□ -1.68
PTCHD3Q3KNS1 RPL12P34-201ENST00000424532 479 ntBASIC4.56□□□□□ -1.68
PTCHD3Q3KNS1 ANAPC1P1-201ENST00000426186 2145 ntBASIC4.56□□□□□ -1.68
PTCHD3Q3KNS1 AC003084.1-201ENST00000427030 435 ntTSL 5 BASIC4.56□□□□□ -1.68
PTCHD3Q3KNS1 AF230666.1-201ENST00000429151 786 ntTSL 2 BASIC4.56□□□□□ -1.68
Retrieved 100 of 98,524 protein–RNA pairs in 100.8 ms