Protein–RNA interactions for Protein: P52701

MSH6, DNA mismatch repair protein Msh6, humanhuman

Predictions only

Length 1,360 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6P52701 RNU1-41P-201ENST00000516161 162 ntBASIC4.32□□□□□ -1.72
MSH6P52701 RNU1-48P-201ENST00000516400 162 ntBASIC4.32□□□□□ -1.72
MSH6P52701 AC010306.1-201ENST00000523223 1117 ntBASIC4.32□□□□□ -1.72
MSH6P52701 AC036103.1-201ENST00000563846 823 ntTSL 5 BASIC4.32□□□□□ -1.72
MSH6P52701 CD24P2-201ENST00000565486 219 ntBASIC4.32□□□□□ -1.72
MSH6P52701 GEN1-201ENST00000317402 9854 ntAPPRIS P1 TSL 2 BASIC4.32□□□□□ -1.72
MSH6P52701 SYNE1-207ENST00000367255 27748 ntAPPRIS P4 TSL 1 (best) BASIC4.32□□□□□ -1.72
MSH6P52701 PREPL-207ENST00000409957 4703 ntTSL 5 BASIC4.31□□□□□ -1.72
MSH6P52701 AL451142.2-201ENST00000429076 2090 ntBASIC4.31□□□□□ -1.72
MSH6P52701 AC107021.2-201ENST00000567714 2095 ntBASIC4.31□□□□□ -1.72
MSH6P52701 PCDH11X-208ENST00000504220 4017 ntAPPRIS ALT2 TSL 1 (best) BASIC4.31□□□□□ -1.72
MSH6P52701 MIR22-201ENST00000362190 85 ntBASIC4.31□□□□□ -1.72
MSH6P52701 RNU6-1320P-201ENST00000390838 107 ntBASIC4.31□□□□□ -1.72
MSH6P52701 RNU6-1269P-201ENST00000391139 107 ntBASIC4.31□□□□□ -1.72
MSH6P52701 RNA5SP293-201ENST00000410527 113 ntBASIC4.31□□□□□ -1.72
MSH6P52701 AC010731.3-201ENST00000415029 566 ntTSL 4 BASIC4.31□□□□□ -1.72
MSH6P52701 ARPP21-AS1-201ENST00000415706 542 ntTSL 4 BASIC4.31□□□□□ -1.72
MSH6P52701 LINC01349-201ENST00000416343 497 ntTSL 3 BASIC4.31□□□□□ -1.72
MSH6P52701 AC011242.1-201ENST00000433596 1158 ntBASIC4.31□□□□□ -1.72
MSH6P52701 LRRC69-202ENST00000448384 1044 ntAPPRIS P1 TSL 5 BASIC4.31□□□□□ -1.72
MSH6P52701 AC067945.3-201ENST00000456176 386 ntTSL 5 BASIC4.31□□□□□ -1.72
MSH6P52701 RNU6-599P-201ENST00000459383 107 ntBASIC4.31□□□□□ -1.72
MSH6P52701 RNU6-1193P-201ENST00000459461 107 ntBASIC4.31□□□□□ -1.72
MSH6P52701 HMGB1P3-201ENST00000502802 616 ntBASIC4.31□□□□□ -1.72
MSH6P52701 AC116535.2-201ENST00000532365 441 ntTSL 5 BASIC4.31□□□□□ -1.72
MSH6P52701 AHI1-217ENST00000534469 680 ntTSL 3 BASIC4.31□□□□□ -1.72
MSH6P52701 AC026462.2-201ENST00000565771 286 ntTSL 2 BASIC4.31□□□□□ -1.72
MSH6P52701 AC138207.5-201ENST00000579561 409 ntTSL 3 BASIC4.31□□□□□ -1.72
MSH6P52701 AC138761.3-201ENST00000579993 334 ntBASIC4.31□□□□□ -1.72
MSH6P52701 MAPKAPK5-AS1-205ENST00000590479 543 ntTSL 2 BASIC4.31□□□□□ -1.72
MSH6P52701 AC007619.2-201ENST00000605743 379 ntBASIC4.31□□□□□ -1.72
MSH6P52701 U7.8-201ENST00000619968 63 ntBASIC4.31□□□□□ -1.72
MSH6P52701 RNU6-368P-201ENST00000620928 107 ntBASIC4.31□□□□□ -1.72
MSH6P52701 RNU6-538P-201ENST00000622329 107 ntBASIC4.31□□□□□ -1.72
MSH6P52701 CCPG1-203ENST00000442196 3453 ntAPPRIS P1 TSL 2 BASIC4.31□□□□□ -1.72
MSH6P52701 CCDC178-213ENST00000583930 3094 ntAPPRIS ALT2 TSL 1 (best) BASIC4.31□□□□□ -1.72
MSH6P52701 EMCN-201ENST00000296420 4037 ntAPPRIS P3 TSL 1 (best) BASIC4.31□□□□□ -1.72
MSH6P52701 FOXP2-206ENST00000393491 6085 ntTSL 5 BASIC4.31□□□□□ -1.72
MSH6P52701 HNRNPC-203ENST00000430246 4501 ntAPPRIS P2 TSL 1 (best) BASIC4.31□□□□□ -1.72
MSH6P52701 KMO-204ENST00000366559 5261 ntAPPRIS P2 TSL 1 (best) BASIC4.31□□□□□ -1.72
MSH6P52701 GBE1-205ENST00000489715 2513 ntAPPRIS ALT2 TSL 2 BASIC4.3□□□□□ -1.72
MSH6P52701 ZNF682-209ENST00000597972 1538 ntAPPRIS ALT2 TSL 1 (best) BASIC4.3□□□□□ -1.72
MSH6P52701 AL672167.1-206ENST00000356293 943 ntBASIC4.3□□□□□ -1.72
MSH6P52701 SPANXN4-201ENST00000370504 560 ntAPPRIS ALT2 TSL 5 BASIC4.3□□□□□ -1.72
MSH6P52701 SNORD67-201ENST00000390833 111 ntBASIC4.3□□□□□ -1.72
MSH6P52701 OFD1P11Y-201ENST00000418213 1177 ntBASIC4.3□□□□□ -1.72
MSH6P52701 RPL23AP82-202ENST00000427528 469 ntBASIC4.3□□□□□ -1.72
MSH6P52701 RPL21P40-201ENST00000428586 483 ntBASIC4.3□□□□□ -1.72
MSH6P52701 RAB28P3-201ENST00000448325 597 ntBASIC4.3□□□□□ -1.72
MSH6P52701 CENPBD1P1-201ENST00000464061 469 ntBASIC4.3□□□□□ -1.72
MSH6P52701 PRDX3P4-201ENST00000470828 747 ntBASIC4.3□□□□□ -1.72
MSH6P52701 AC021205.2-201ENST00000480069 347 ntBASIC4.3□□□□□ -1.72
MSH6P52701 ATP5F1P7-201ENST00000567330 760 ntBASIC4.3□□□□□ -1.72
MSH6P52701 FAM60CP-201ENST00000591086 664 ntBASIC4.3□□□□□ -1.72
MSH6P52701 AL035413.2-201ENST00000604801 525 ntBASIC4.3□□□□□ -1.72
MSH6P52701 AC117490.2-201ENST00000610042 594 ntBASIC4.3□□□□□ -1.72
MSH6P52701 MIR7843-201ENST00000622274 79 ntBASIC4.3□□□□□ -1.72
MSH6P52701 MBNL1-220ENST00000493459 4205 ntTSL 1 (best) BASIC4.3□□□□□ -1.72
MSH6P52701 SMCO3-201ENST00000316048 2104 ntAPPRIS P1 TSL 1 (best) BASIC4.3□□□□□ -1.72
MSH6P52701 TMEM232-201ENST00000455884 2501 ntAPPRIS P2 TSL 2 BASIC4.3□□□□□ -1.72
MSH6P52701 OR2L2-203ENST00000642011 4225 ntAPPRIS P1 BASIC4.3□□□□□ -1.72
MSH6P52701 ZNF678-202ENST00000397097 8212 ntAPPRIS P1 TSL 1 (best) BASIC4.3□□□□□ -1.72
MSH6P52701 AC104662.3-202ENST00000507794 4055 ntTSL 2 BASIC4.3□□□□□ -1.72
MSH6P52701 AF117829.1-206ENST00000621883 3802 ntBASIC4.3□□□□□ -1.72
MSH6P52701 C6orf10-205ENST00000527965 2076 ntAPPRIS ALT2 TSL 2 BASIC4.3□□□□□ -1.72
MSH6P52701 EFR3A-202ENST00000519656 5247 ntTSL 1 (best) BASIC4.29□□□□□ -1.72
MSH6P52701 AP002088.1-201ENST00000382740 395 ntBASIC4.29□□□□□ -1.72
MSH6P52701 SNORA70B-201ENST00000384210 135 ntBASIC4.29□□□□□ -1.72
MSH6P52701 RNU6-1263P-201ENST00000384601 106 ntBASIC4.29□□□□□ -1.72
MSH6P52701 GLS-203ENST00000409215 632 ntTSL 4 BASIC4.29□□□□□ -1.72
MSH6P52701 AL451164.2-201ENST00000445932 597 ntTSL 2 BASIC4.29□□□□□ -1.72
MSH6P52701 NECAP1P2-201ENST00000455668 727 ntBASIC4.29□□□□□ -1.72
MSH6P52701 AC135457.1-201ENST00000503553 664 ntTSL 3 BASIC4.29□□□□□ -1.72
MSH6P52701 ZCCHC10-207ENST00000509437 1070 ntAPPRIS ALT2 TSL 1 (best) BASIC4.29□□□□□ -1.72
MSH6P52701 LINC02283-201ENST00000511634 474 ntTSL 3 BASIC4.29□□□□□ -1.72
MSH6P52701 AP001189.6-201ENST00000528781 831 ntTSL 1 (best) BASIC4.29□□□□□ -1.72
MSH6P52701 PDCD5P1-201ENST00000543528 309 ntBASIC4.29□□□□□ -1.72
MSH6P52701 AL355922.5-201ENST00000553534 351 ntTSL 3 BASIC4.29□□□□□ -1.72
MSH6P52701 AC090607.4-201ENST00000558192 369 ntTSL 3 BASIC4.29□□□□□ -1.72
MSH6P52701 AC016597.1-201ENST00000564893 528 ntTSL 4 BASIC4.29□□□□□ -1.72
MSH6P52701 AC130650.1-201ENST00000570581 415 ntTSL 2 BASIC4.29□□□□□ -1.72
MSH6P52701 SNORD39.2-201ENST00000579995 76 ntBASIC4.29□□□□□ -1.72
MSH6P52701 AC008739.1-201ENST00000598137 575 ntTSL 2 BASIC4.29□□□□□ -1.72
MSH6P52701 AC009948.4-201ENST00000604692 675 ntBASIC4.29□□□□□ -1.72
MSH6P52701 AL592494.3-201ENST00000609485 464 ntBASIC4.29□□□□□ -1.72
MSH6P52701 WDR17-204ENST00000507824 4119 ntTSL 5 BASIC4.29□□□□□ -1.72
MSH6P52701 CDC27-207ENST00000531206 3177 ntAPPRIS ALT1 TSL 1 (best) BASIC4.29□□□□□ -1.72
MSH6P52701 OR10AB1P-202ENST00000641219 1686 ntBASIC4.28□□□□□ -1.72
MSH6P52701 PANK1-202ENST00000322191 2513 ntTSL 1 (best) BASIC4.28□□□□□ -1.72
MSH6P52701 C1orf105-201ENST00000367725 888 ntTSL 2 BASIC4.28□□□□□ -1.72
MSH6P52701 RPL7P25-201ENST00000404151 721 ntBASIC4.28□□□□□ -1.72
MSH6P52701 AL021026.1-201ENST00000422841 658 ntTSL 3 BASIC4.28□□□□□ -1.72
MSH6P52701 MIR99AHG-205ENST00000435697 716 ntTSL 2 BASIC4.28□□□□□ -1.72
MSH6P52701 VPS29-202ENST00000447578 996 ntTSL 1 (best) BASIC4.28□□□□□ -1.72
MSH6P52701 AL121584.1-201ENST00000453972 519 ntTSL 3 BASIC4.28□□□□□ -1.72
MSH6P52701 AC114967.1-201ENST00000504890 259 ntBASIC4.28□□□□□ -1.72
MSH6P52701 AC021146.1-201ENST00000511202 716 ntBASIC4.28□□□□□ -1.72
MSH6P52701 AC092851.1-201ENST00000535964 478 ntBASIC4.28□□□□□ -1.72
MSH6P52701 AC009137.2-201ENST00000568179 641 ntTSL 3 BASIC4.28□□□□□ -1.72
MSH6P52701 AC006116.4-201ENST00000589671 452 ntTSL 2 BASIC4.28□□□□□ -1.72
Retrieved 100 of 98,524 protein–RNA pairs in 125 ms