Protein–RNA interactions for Protein: P35548

MSX2, Homeobox protein MSX-2, humanhuman

Predicted RBP Predictions only

Length 267 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX2P35548 AL035530.1-201ENST00000446887 331 ntTSL 3 BASIC4.84□□□□□ -1.63
MSX2P35548 RPL7L1P1-201ENST00000448259 785 ntBASIC4.84□□□□□ -1.63
MSX2P35548 AL022329.1-203ENST00000453811 451 ntTSL 3 BASIC4.84□□□□□ -1.63
MSX2P35548 C1DP4-201ENST00000455429 424 ntBASIC4.84□□□□□ -1.63
MSX2P35548 PCCA-AS1-203ENST00000455958 356 ntTSL 3 BASIC4.84□□□□□ -1.63
MSX2P35548 AC091180.1-201ENST00000462104 372 ntBASIC4.84□□□□□ -1.63
MSX2P35548 AC006511.1-201ENST00000470614 315 ntBASIC4.84□□□□□ -1.63
MSX2P35548 AC017015.1-201ENST00000477387 286 ntBASIC4.84□□□□□ -1.63
MSX2P35548 AC073073.1-201ENST00000493920 463 ntBASIC4.84□□□□□ -1.63
MSX2P35548 AC106872.3-201ENST00000495104 446 ntBASIC4.84□□□□□ -1.63
MSX2P35548 RPL37-204ENST00000508493 553 ntAPPRIS ALT1 TSL 1 (best) BASIC4.84□□□□□ -1.63
MSX2P35548 AC109481.1-201ENST00000509173 282 ntBASIC4.84□□□□□ -1.63
MSX2P35548 RNA5SP464-201ENST00000516251 108 ntBASIC4.84□□□□□ -1.63
MSX2P35548 Y_RNA.701-201ENST00000516812 110 ntBASIC4.84□□□□□ -1.63
MSX2P35548 AZIN1-AS1-203ENST00000517996 756 ntTSL 3 BASIC4.84□□□□□ -1.63
MSX2P35548 RPL23AP53-201ENST00000521854 457 ntBASIC4.84□□□□□ -1.63
MSX2P35548 AC099520.1-206ENST00000523434 486 ntTSL 3 BASIC4.84□□□□□ -1.63
MSX2P35548 ANAPC15-205ENST00000535503 734 ntAPPRIS P3 TSL 3 BASIC4.84□□□□□ -1.63
MSX2P35548 LINC02408-202ENST00000538573 559 ntTSL 4 BASIC4.84□□□□□ -1.63
MSX2P35548 AC091534.1-202ENST00000549953 468 ntTSL 5 BASIC4.84□□□□□ -1.63
MSX2P35548 AL358335.2-201ENST00000555693 487 ntTSL 3 BASIC4.84□□□□□ -1.63
MSX2P35548 TRAV30-201ENST00000557168 337 ntAPPRIS P1 BASIC4.84□□□□□ -1.63
MSX2P35548 AL031600.2-201ENST00000563223 307 ntTSL 5 BASIC4.84□□□□□ -1.63
MSX2P35548 TTN-AS1-212ENST00000582847 1036 ntTSL 5 BASIC4.84□□□□□ -1.63
MSX2P35548 HMGN1P30-201ENST00000589286 268 ntBASIC4.84□□□□□ -1.63
MSX2P35548 AC104785.1-201ENST00000603220 588 ntBASIC4.84□□□□□ -1.63
MSX2P35548 ACYP2-208ENST00000606865 674 ntTSL 5 BASIC4.84□□□□□ -1.63
MSX2P35548 AC000068.2-201ENST00000608816 460 ntBASIC4.84□□□□□ -1.63
MSX2P35548 LRRC2-AS1-202ENST00000614743 633 ntTSL 3 BASIC4.84□□□□□ -1.63
MSX2P35548 AC123768.4-201ENST00000616244 701 ntBASIC4.84□□□□□ -1.63
MSX2P35548 BIRC6-AS2-201ENST00000623382 589 ntTSL 2 BASIC4.84□□□□□ -1.63
MSX2P35548 FRG1KP-201ENST00000623592 341 ntBASIC4.84□□□□□ -1.63
MSX2P35548 AC129778.1-202ENST00000623812 261 ntBASIC4.84□□□□□ -1.63
MSX2P35548 CU639417.4-201ENST00000623928 207 ntBASIC4.84□□□□□ -1.63
MSX2P35548 AL591379.1-207ENST00000635982 261 ntBASIC4.84□□□□□ -1.63
MSX2P35548 AMYH02020865.1-205ENST00000636189 261 ntBASIC4.84□□□□□ -1.63
MSX2P35548 AC024614.3-201ENST00000637860 256 ntBASIC4.84□□□□□ -1.63
MSX2P35548 ZNF836-204ENST00000597252 3209 ntAPPRIS P2 TSL 2 BASIC4.84□□□□□ -1.63
MSX2P35548 TM4SF1-202ENST00000472441 3115 ntTSL 2 BASIC4.84□□□□□ -1.63
MSX2P35548 CSMD3-203ENST00000343508 13018 ntTSL 1 (best) BASIC4.84□□□□□ -1.63
MSX2P35548 PATJ-213ENST00000613764 4172 ntTSL 5 BASIC4.84□□□□□ -1.64
MSX2P35548 OR8A1-203ENST00000641670 5709 ntAPPRIS P1 BASIC4.84□□□□□ -1.64
MSX2P35548 PTCD2-202ENST00000380639 11151 ntAPPRIS P1 TSL 5 BASIC4.84□□□□□ -1.64
MSX2P35548 ADAM29-213ENST00000615367 3386 ntAPPRIS P1 TSL 5 BASIC4.84□□□□□ -1.64
MSX2P35548 HDAC9-204ENST00000406451 9705 ntAPPRIS ALT1 TSL 1 (best) BASIC4.83□□□□□ -1.64
MSX2P35548 PANDAR-201ENST00000629595 1506 ntBASIC4.83□□□□□ -1.64
MSX2P35548 ADAM2-207ENST00000622267 2480 ntAPPRIS ALT2 TSL 2 BASIC4.83□□□□□ -1.64
MSX2P35548 AL157700.1-201ENST00000561973 1432 ntBASIC4.83□□□□□ -1.64
MSX2P35548 ZNF782-208ENST00000535338 3296 ntAPPRIS P1 TSL 3 BASIC4.83□□□□□ -1.64
MSX2P35548 MAP2-202ENST00000360351 9711 ntAPPRIS P2 TSL 5 BASIC4.83□□□□□ -1.64
MSX2P35548 RNMT-209ENST00000592764 4108 ntTSL 2 BASIC4.83□□□□□ -1.64
MSX2P35548 ALB-201ENST00000295897 2263 ntAPPRIS P1 TSL 1 (best) BASIC4.83□□□□□ -1.64
MSX2P35548 Y_RNA.356-201ENST00000365475 113 ntBASIC4.83□□□□□ -1.64
MSX2P35548 FAM107B-204ENST00000378465 1052 ntAPPRIS P1 TSL 2 BASIC4.83□□□□□ -1.64
MSX2P35548 DEFB136-201ENST00000382209 237 ntAPPRIS P1 TSL 1 (best) BASIC4.83□□□□□ -1.64
MSX2P35548 EEF1E1-BLOC1S5-201ENST00000397456 768 ntAPPRIS P1 TSL 3 BASIC4.83□□□□□ -1.64
MSX2P35548 SNRPEP2-201ENST00000397592 279 ntBASIC4.83□□□□□ -1.64
MSX2P35548 EFCAB9-201ENST00000398186 702 ntAPPRIS P1 TSL 3 BASIC4.83□□□□□ -1.64
MSX2P35548 AL121972.1-201ENST00000402023 252 ntBASIC4.83□□□□□ -1.64
MSX2P35548 MIR1305-201ENST00000408300 86 ntBASIC4.83□□□□□ -1.64
MSX2P35548 RN7SKP266-201ENST00000410232 287 ntBASIC4.83□□□□□ -1.64
MSX2P35548 RN7SKP229-201ENST00000410465 302 ntBASIC4.83□□□□□ -1.64
MSX2P35548 JKAMPP1-201ENST00000413804 919 ntBASIC4.83□□□□□ -1.64
MSX2P35548 SDCBPP3-201ENST00000419629 891 ntBASIC4.83□□□□□ -1.64
MSX2P35548 COX6CP17-201ENST00000421389 185 ntBASIC4.83□□□□□ -1.64
MSX2P35548 AL445669.1-201ENST00000426743 755 ntBASIC4.83□□□□□ -1.64
MSX2P35548 ISCA1P6-201ENST00000427740 390 ntBASIC4.83□□□□□ -1.64
MSX2P35548 COX6CP13-201ENST00000428703 226 ntBASIC4.83□□□□□ -1.64
MSX2P35548 AL049749.1-201ENST00000430281 632 ntTSL 2 BASIC4.83□□□□□ -1.64
MSX2P35548 AC023347.2-201ENST00000433994 462 ntBASIC4.83□□□□□ -1.64
MSX2P35548 AL353597.2-202ENST00000434901 373 ntBASIC4.83□□□□□ -1.64
MSX2P35548 SKP1P1-201ENST00000438081 489 ntBASIC4.83□□□□□ -1.64
MSX2P35548 SDCBPP1-201ENST00000440192 890 ntBASIC4.83□□□□□ -1.64
MSX2P35548 PARGP1-202ENST00000440803 790 ntTSL 2 BASIC4.83□□□□□ -1.64
MSX2P35548 AL162386.2-201ENST00000442428 457 ntTSL 3 BASIC4.83□□□□□ -1.64
MSX2P35548 AC073109.1-201ENST00000445066 978 ntBASIC4.83□□□□□ -1.64
MSX2P35548 NUTM2A-AS1-209ENST00000447424 571 ntTSL 3 BASIC4.83□□□□□ -1.64
MSX2P35548 AC068492.1-201ENST00000448672 469 ntTSL 3 BASIC4.83□□□□□ -1.64
MSX2P35548 MTCO1P42-201ENST00000457379 726 ntBASIC4.83□□□□□ -1.64
MSX2P35548 RPL35P6-201ENST00000490024 372 ntBASIC4.83□□□□□ -1.64
MSX2P35548 UBA52P3-201ENST00000491303 382 ntBASIC4.83□□□□□ -1.64
MSX2P35548 RN7SL101P-201ENST00000496350 279 ntBASIC4.83□□□□□ -1.64
MSX2P35548 MYLK-AS2-201ENST00000510827 500 ntTSL 3 BASIC4.83□□□□□ -1.64
MSX2P35548 AC010493.1-201ENST00000513479 292 ntBASIC4.83□□□□□ -1.64
MSX2P35548 FLVCR2-207ENST00000555027 938 ntTSL 3 BASIC4.83□□□□□ -1.64
MSX2P35548 AC009554.1-201ENST00000559251 399 ntTSL 5 BASIC4.83□□□□□ -1.64
MSX2P35548 AC113208.4-201ENST00000563568 206 ntTSL 3 BASIC4.83□□□□□ -1.64
MSX2P35548 NQO1-206ENST00000564043 892 ntTSL 1 (best) BASIC4.83□□□□□ -1.64
MSX2P35548 CYCSP40-201ENST00000575927 294 ntBASIC4.83□□□□□ -1.64
MSX2P35548 AC015908.4-201ENST00000582334 575 ntTSL 4 BASIC4.83□□□□□ -1.64
MSX2P35548 AC110743.1-201ENST00000584870 478 ntBASIC4.83□□□□□ -1.64
MSX2P35548 NRBF2P1-201ENST00000587407 859 ntBASIC4.83□□□□□ -1.64
MSX2P35548 AC005498.1-201ENST00000592125 465 ntBASIC4.83□□□□□ -1.64
MSX2P35548 AC011445.2-201ENST00000599274 173 ntBASIC4.83□□□□□ -1.64
MSX2P35548 AC087283.1-201ENST00000604029 1074 ntBASIC4.83□□□□□ -1.64
MSX2P35548 AC011816.2-201ENST00000607089 556 ntBASIC4.83□□□□□ -1.64
MSX2P35548 AL109811.3-202ENST00000612387 651 ntTSL 3 BASIC4.83□□□□□ -1.64
MSX2P35548 THRA1/BTR-204ENST00000621191 513 ntTSL 5 BASIC4.83□□□□□ -1.64
MSX2P35548 OR10K1-203ENST00000641432 3775 ntAPPRIS P1 BASIC4.83□□□□□ -1.64
MSX2P35548 AL031320.2-201ENST00000591892 2079 ntTSL 5 BASIC4.83□□□□□ -1.64
Retrieved 100 of 98,524 protein–RNA pairs in 153.4 ms