Protein–RNA interactions for Protein: P09016

HOXD4, Homeobox protein Hox-D4, humanhuman

Predicted RBP Predictions only

Length 255 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD4P09016 AL354754.1-201ENST00000449730 625 ntTSL 3 BASIC3.64□□□□□ -1.83
HOXD4P09016 NAALADL2-AS3-202ENST00000453180 413 ntTSL 3 BASIC3.64□□□□□ -1.83
HOXD4P09016 SNRPGP5-201ENST00000456003 220 ntBASIC3.64□□□□□ -1.83
HOXD4P09016 ANK3-207ENST00000460468 677 ntTSL 3 BASIC3.64□□□□□ -1.83
HOXD4P09016 NAP1L1P3-201ENST00000462291 880 ntBASIC3.64□□□□□ -1.83
HOXD4P09016 GAPDHP36-201ENST00000480688 918 ntBASIC3.64□□□□□ -1.83
HOXD4P09016 FTH1P24-201ENST00000503502 462 ntBASIC3.64□□□□□ -1.83
HOXD4P09016 AC008565.1-201ENST00000509046 885 ntBASIC3.64□□□□□ -1.83
HOXD4P09016 TPT1-AS1-216ENST00000522845 403 ntTSL 3 BASIC3.64□□□□□ -1.83
HOXD4P09016 SPAG11B-207ENST00000528168 481 ntTSL 5 BASIC3.64□□□□□ -1.83
HOXD4P09016 AP002989.1-201ENST00000533459 562 ntTSL 4 BASIC3.64□□□□□ -1.83
HOXD4P09016 KLRC2-204ENST00000536833 771 ntTSL 5 BASIC3.64□□□□□ -1.83
HOXD4P09016 AC055720.2-201ENST00000537724 172 ntTSL 3 BASIC3.64□□□□□ -1.83
HOXD4P09016 AF111169.4-202ENST00000553507 262 ntTSL 3 BASIC3.64□□□□□ -1.83
HOXD4P09016 AL161713.1-201ENST00000555538 145 ntBASIC3.64□□□□□ -1.83
HOXD4P09016 AC090971.2-201ENST00000558142 510 ntTSL 3 BASIC3.64□□□□□ -1.83
HOXD4P09016 AC020891.1-201ENST00000558785 174 ntTSL 3 BASIC3.64□□□□□ -1.83
HOXD4P09016 AC009101.2-201ENST00000564293 456 ntTSL 3 BASIC3.64□□□□□ -1.83
HOXD4P09016 CYP2C60P-201ENST00000566088 139 ntBASIC3.64□□□□□ -1.83
HOXD4P09016 MMP2-AS1-202ENST00000569037 553 ntTSL 5 BASIC3.64□□□□□ -1.83
HOXD4P09016 AC012417.1-201ENST00000582307 1039 ntBASIC3.64□□□□□ -1.83
HOXD4P09016 AC233702.6-201ENST00000584594 396 ntTSL 3 BASIC3.64□□□□□ -1.83
HOXD4P09016 DYNAP-202ENST00000585973 1102 ntAPPRIS ALT2 TSL 3 BASIC3.64□□□□□ -1.83
HOXD4P09016 AC113368.1-201ENST00000603736 382 ntBASIC3.64□□□□□ -1.83
HOXD4P09016 AL035411.2-201ENST00000604022 421 ntBASIC3.64□□□□□ -1.83
HOXD4P09016 AC092636.1-201ENST00000608609 415 ntTSL 2 BASIC3.64□□□□□ -1.83
HOXD4P09016 AL139089.1-201ENST00000620372 975 ntBASIC3.64□□□□□ -1.83
HOXD4P09016 PACRG-211ENST00000621363 360 ntTSL 5 BASIC3.64□□□□□ -1.83
HOXD4P09016 MIR6500-201ENST00000622700 86 ntBASIC3.64□□□□□ -1.83
HOXD4P09016 AP002791.1-201ENST00000623291 381 ntBASIC3.64□□□□□ -1.83
HOXD4P09016 AC012442.3-202ENST00000636742 206 ntBASIC3.64□□□□□ -1.83
HOXD4P09016 OR6C3-203ENST00000641740 1093 ntAPPRIS P1 BASIC3.64□□□□□ -1.83
HOXD4P09016 GCSAML-203ENST00000366491 4130 ntAPPRIS ALT2 TSL 2 BASIC3.64□□□□□ -1.83
HOXD4P09016 CCDC178-205ENST00000406524 3039 ntAPPRIS ALT2 TSL 5 BASIC3.64□□□□□ -1.83
HOXD4P09016 DMXL2-202ENST00000449909 7465 ntAPPRIS ALT2 TSL 1 (best) BASIC3.64□□□□□ -1.83
HOXD4P09016 AC111188.2-201ENST00000529697 1387 ntBASIC3.63□□□□□ -1.83
HOXD4P09016 AKAP7-209ENST00000541650 2008 ntTSL 5 BASIC3.63□□□□□ -1.83
HOXD4P09016 RNMT-203ENST00000543302 1849 ntAPPRIS P1 TSL 1 (best) BASIC3.63□□□□□ -1.83
HOXD4P09016 ANKRD36C-202ENST00000456556 5428 ntAPPRIS P1 TSL 5 BASIC3.63□□□□□ -1.83
HOXD4P09016 SPINK1-201ENST00000296695 542 ntAPPRIS P1 TSL 1 (best) BASIC3.63□□□□□ -1.83
HOXD4P09016 IL1RAPL2-201ENST00000344799 1290 ntTSL 5 BASIC3.63□□□□□ -1.83
HOXD4P09016 MT-ND2-201ENST00000361453 1042 ntAPPRIS P1 BASIC3.63□□□□□ -1.83
HOXD4P09016 RNU4-51P-201ENST00000364206 140 ntBASIC3.63□□□□□ -1.83
HOXD4P09016 RNU4-68P-201ENST00000364314 141 ntBASIC3.63□□□□□ -1.83
HOXD4P09016 SNRPE-201ENST00000367208 355 ntTSL 2 BASIC3.63□□□□□ -1.83
HOXD4P09016 C1orf105-201ENST00000367725 888 ntTSL 2 BASIC3.63□□□□□ -1.83
HOXD4P09016 DEFB110-201ENST00000371148 384 ntAPPRIS P3 TSL 1 (best) BASIC3.63□□□□□ -1.83
HOXD4P09016 TAS2R15P-201ENST00000390674 928 ntBASIC3.63□□□□□ -1.83
HOXD4P09016 MTCO1P56-201ENST00000401674 224 ntBASIC3.63□□□□□ -1.83
HOXD4P09016 SNORA3C-201ENST00000408792 125 ntBASIC3.63□□□□□ -1.83
HOXD4P09016 HNMT-204ENST00000410115 1150 ntAPPRIS P1 TSL 5 BASIC3.63□□□□□ -1.83
HOXD4P09016 ZNF736P2Y-201ENST00000416040 1279 ntBASIC3.63□□□□□ -1.83
HOXD4P09016 AC100848.1-201ENST00000417298 637 ntTSL 3 BASIC3.63□□□□□ -1.83
HOXD4P09016 KRR1P1-201ENST00000419430 803 ntBASIC3.63□□□□□ -1.83
HOXD4P09016 MTND2P16-201ENST00000419987 799 ntBASIC3.63□□□□□ -1.83
HOXD4P09016 CETN4P-201ENST00000432407 469 ntBASIC3.63□□□□□ -1.83
HOXD4P09016 TRAPPC2P9-201ENST00000434556 343 ntBASIC3.63□□□□□ -1.83
HOXD4P09016 AL592437.1-201ENST00000443781 492 ntBASIC3.63□□□□□ -1.83
HOXD4P09016 TPTE2P6-202ENST00000445572 1007 ntBASIC3.63□□□□□ -1.83
HOXD4P09016 AC005002.1-201ENST00000447458 540 ntBASIC3.63□□□□□ -1.83
HOXD4P09016 AL500522.2-201ENST00000448562 343 ntBASIC3.63□□□□□ -1.83
HOXD4P09016 AC096992.1-201ENST00000459808 709 ntBASIC3.63□□□□□ -1.83
HOXD4P09016 MTCO2P6-201ENST00000463134 685 ntBASIC3.63□□□□□ -1.83
HOXD4P09016 AC091860.1-201ENST00000505723 432 ntBASIC3.63□□□□□ -1.83
HOXD4P09016 LINC01088-203ENST00000507476 785 ntTSL 3 BASIC3.63□□□□□ -1.83
HOXD4P09016 AC027031.1-201ENST00000517318 489 ntTSL 3 BASIC3.63□□□□□ -1.83
HOXD4P09016 LINC02143-201ENST00000519929 520 ntTSL 3 BASIC3.63□□□□□ -1.83
HOXD4P09016 DUXAP5-201ENST00000529668 529 ntBASIC3.63□□□□□ -1.83
HOXD4P09016 CYCSP30-201ENST00000546447 172 ntBASIC3.63□□□□□ -1.83
HOXD4P09016 LINC00520-201ENST00000554186 831 ntTSL 5 BASIC3.63□□□□□ -1.83
HOXD4P09016 AC020891.3-201ENST00000560011 363 ntTSL 3 BASIC3.63□□□□□ -1.83
HOXD4P09016 AC092138.1-201ENST00000568659 472 ntTSL 2 BASIC3.63□□□□□ -1.83
HOXD4P09016 AC120057.2-201ENST00000571520 271 ntBASIC3.63□□□□□ -1.83
HOXD4P09016 MTCO1P40-201ENST00000574371 625 ntBASIC3.63□□□□□ -1.83
HOXD4P09016 AC129492.2-201ENST00000577807 517 ntTSL 3 BASIC3.63□□□□□ -1.83
HOXD4P09016 AC079070.1-201ENST00000578740 555 ntTSL 2 BASIC3.63□□□□□ -1.83
HOXD4P09016 LINC02079-201ENST00000582518 294 ntTSL 2 BASIC3.63□□□□□ -1.83
HOXD4P09016 ZNF562-205ENST00000587392 583 ntTSL 2 BASIC3.63□□□□□ -1.83
HOXD4P09016 AC245036.5-201ENST00000596330 847 ntBASIC3.63□□□□□ -1.83
HOXD4P09016 AC002487.1-201ENST00000604565 994 ntBASIC3.63□□□□□ -1.83
HOXD4P09016 AL592436.1-201ENST00000605135 558 ntBASIC3.63□□□□□ -1.83
HOXD4P09016 PRKCQ-AS1-208ENST00000608453 587 ntTSL 5 BASIC3.63□□□□□ -1.83
HOXD4P09016 AC244100.1-202ENST00000621554 382 ntBASIC3.63□□□□□ -1.83
HOXD4P09016 AC092628.2-201ENST00000622492 339 ntBASIC3.63□□□□□ -1.83
HOXD4P09016 AC244205.2-202ENST00000635781 342 ntBASIC3.63□□□□□ -1.83
HOXD4P09016 OFD1P5Y-201ENST00000447585 2590 ntBASIC3.63□□□□□ -1.83
HOXD4P09016 DGKH-201ENST00000261491 17261 ntTSL 1 (best) BASIC3.63□□□□□ -1.83
HOXD4P09016 PPP1R9A-208ENST00000456331 10090 ntTSL 1 (best) BASIC3.63□□□□□ -1.83
HOXD4P09016 BDP1P-201ENST00000582658 1990 ntBASIC3.63□□□□□ -1.83
HOXD4P09016 PRO1804-201ENST00000623780 2050 ntBASIC3.63□□□□□ -1.83
HOXD4P09016 LRRC63-203ENST00000595396 2327 ntAPPRIS P2 TSL 5 BASIC3.62□□□□□ -1.83
HOXD4P09016 TNNI3K-201ENST00000326637 3001 ntAPPRIS P1 TSL 1 (best) BASIC3.62□□□□□ -1.83
HOXD4P09016 LINC01625-201ENST00000454788 1690 ntTSL 2 BASIC3.62□□□□□ -1.83
HOXD4P09016 SGIP1-206ENST00000435165 3646 ntAPPRIS ALT2 TSL 2 BASIC3.62□□□□□ -1.83
HOXD4P09016 OR1C1-202ENST00000641256 3719 ntAPPRIS P1 BASIC3.62□□□□□ -1.83
HOXD4P09016 SULT1E1-201ENST00000226444 1780 ntAPPRIS P1 TSL 1 (best) BASIC3.62□□□□□ -1.83
HOXD4P09016 PPIL4-202ENST00000340881 1089 ntTSL 1 (best) BASIC3.62□□□□□ -1.83
HOXD4P09016 SYF2-202ENST00000354361 926 ntTSL 2 BASIC3.62□□□□□ -1.83
HOXD4P09016 RNA5SP387-201ENST00000364226 106 ntBASIC3.62□□□□□ -1.83
HOXD4P09016 SNORD6-201ENST00000365444 73 ntBASIC3.62□□□□□ -1.83
Retrieved 100 of 98,524 protein–RNA pairs in 90.3 ms