Protein–RNA interactions for Protein: Q9HCM9

TRIM39, E3 ubiquitin-protein ligase TRIM39, humanhuman

Predictions only

Length 518 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM39Q9HCM9 AL121612.2-201ENST00000612261 482 ntBASIC5.18□□□□□ -1.58
TRIM39Q9HCM9 AC009159.1-201ENST00000618386 642 ntBASIC5.18□□□□□ -1.58
TRIM39Q9HCM9 NUDT12-202ENST00000507423 1781 ntTSL 2 BASIC5.18□□□□□ -1.58
TRIM39Q9HCM9 CSPP1-201ENST00000262210 4367 ntAPPRIS P3 TSL 1 (best) BASIC5.18□□□□□ -1.58
TRIM39Q9HCM9 CROT-204ENST00000442291 1993 ntTSL 5 BASIC5.18□□□□□ -1.58
TRIM39Q9HCM9 SMNDC1-202ENST00000369603 4341 ntAPPRIS P1 TSL 1 (best) BASIC5.18□□□□□ -1.58
TRIM39Q9HCM9 AC025574.1-201ENST00000554784 1653 ntBASIC5.18□□□□□ -1.58
TRIM39Q9HCM9 PTPN12-206ENST00000435495 2526 ntTSL 2 BASIC5.18□□□□□ -1.58
TRIM39Q9HCM9 ZNF734P-201ENST00000419494 1534 ntBASIC5.18□□□□□ -1.58
TRIM39Q9HCM9 ZBED6-201ENST00000545588 7979 ntTSL 1 (best) BASIC5.18□□□□□ -1.58
TRIM39Q9HCM9 ZNF83-202ENST00000536937 2726 ntAPPRIS P1 TSL 2 BASIC5.17□□□□□ -1.58
TRIM39Q9HCM9 CNTRL-205ENST00000373850 5824 ntTSL 2 BASIC5.17□□□□□ -1.58
TRIM39Q9HCM9 ZNF573-208ENST00000536220 2257 ntAPPRIS P1 TSL 3 BASIC5.17□□□□□ -1.58
TRIM39Q9HCM9 AC091046.3-201ENST00000631455 1574 ntBASIC5.17□□□□□ -1.58
TRIM39Q9HCM9 AC023421.1-201ENST00000590535 1785 ntBASIC5.17□□□□□ -1.58
TRIM39Q9HCM9 ZNF850-203ENST00000614887 7625 ntAPPRIS ALT2 TSL 1 (best) BASIC5.17□□□□□ -1.58
TRIM39Q9HCM9 GPATCH2L-214ENST00000621494 12396 ntAPPRIS P1 TSL 2 BASIC5.17□□□□□ -1.58
TRIM39Q9HCM9 AC011155.1-201ENST00000316512 456 ntBASIC5.17□□□□□ -1.58
TRIM39Q9HCM9 RPL23P2-201ENST00000320371 421 ntBASIC5.17□□□□□ -1.58
TRIM39Q9HCM9 OR6C75-201ENST00000343399 939 ntAPPRIS P1 BASIC5.17□□□□□ -1.58
TRIM39Q9HCM9 Y_RNA.372-201ENST00000365599 102 ntBASIC5.17□□□□□ -1.58
TRIM39Q9HCM9 CRLS1-202ENST00000378868 994 ntTSL 5 BASIC5.17□□□□□ -1.58
TRIM39Q9HCM9 RNU6-1207P-201ENST00000384343 107 ntBASIC5.17□□□□□ -1.58
TRIM39Q9HCM9 MIR105-2-201ENST00000385083 81 ntBASIC5.17□□□□□ -1.58
TRIM39Q9HCM9 MTCO3P40-201ENST00000392516 676 ntBASIC5.17□□□□□ -1.58
TRIM39Q9HCM9 AL590002.1-201ENST00000406554 418 ntBASIC5.17□□□□□ -1.58
TRIM39Q9HCM9 MIR1250-201ENST00000408098 113 ntBASIC5.17□□□□□ -1.58
TRIM39Q9HCM9 MIR1182-201ENST00000408363 97 ntBASIC5.17□□□□□ -1.58
TRIM39Q9HCM9 RNU2-15P-201ENST00000410692 191 ntBASIC5.17□□□□□ -1.58
TRIM39Q9HCM9 RNU4-55P-201ENST00000410731 137 ntBASIC5.17□□□□□ -1.58
TRIM39Q9HCM9 GPS2P1-201ENST00000411761 986 ntBASIC5.17□□□□□ -1.58
TRIM39Q9HCM9 LINC01423-201ENST00000414189 608 ntTSL 3 BASIC5.17□□□□□ -1.58
TRIM39Q9HCM9 USP9YP36-201ENST00000424581 829 ntBASIC5.17□□□□□ -1.58
TRIM39Q9HCM9 AC107081.2-201ENST00000425779 802 ntTSL 5 BASIC5.17□□□□□ -1.58
TRIM39Q9HCM9 PSMA2P3-201ENST00000429685 675 ntBASIC5.17□□□□□ -1.58
TRIM39Q9HCM9 MTND1P2-201ENST00000430604 821 ntBASIC5.17□□□□□ -1.58
TRIM39Q9HCM9 AL158835.2-201ENST00000430970 300 ntTSL 2 BASIC5.17□□□□□ -1.58
TRIM39Q9HCM9 LINC01506-201ENST00000432148 495 ntTSL 2 BASIC5.17□□□□□ -1.58
TRIM39Q9HCM9 AL358934.1-201ENST00000432346 324 ntBASIC5.17□□□□□ -1.58
TRIM39Q9HCM9 RPL19P16-201ENST00000433839 588 ntBASIC5.17□□□□□ -1.58
TRIM39Q9HCM9 AC127537.2-201ENST00000439258 465 ntBASIC5.17□□□□□ -1.58
TRIM39Q9HCM9 AC069542.1-201ENST00000445235 557 ntTSL 3 BASIC5.17□□□□□ -1.58
TRIM39Q9HCM9 AL139121.1-201ENST00000445647 244 ntTSL 2 BASIC5.17□□□□□ -1.58
TRIM39Q9HCM9 AC090804.1-201ENST00000448870 490 ntBASIC5.17□□□□□ -1.58
TRIM39Q9HCM9 RGS5-217ENST00000451759 835 ntTSL 3 BASIC5.17□□□□□ -1.58
TRIM39Q9HCM9 AC073326.1-201ENST00000451832 557 ntTSL 3 BASIC5.17□□□□□ -1.58
TRIM39Q9HCM9 AL589765.1-201ENST00000457548 386 ntTSL 2 BASIC5.17□□□□□ -1.58
TRIM39Q9HCM9 RNU6ATAC28P-201ENST00000459249 118 ntBASIC5.17□□□□□ -1.58
TRIM39Q9HCM9 AC009127.1-201ENST00000467090 155 ntBASIC5.17□□□□□ -1.58
TRIM39Q9HCM9 RN7SL189P-201ENST00000468631 289 ntBASIC5.17□□□□□ -1.58
TRIM39Q9HCM9 MCCC1-AS1-201ENST00000471731 765 ntTSL 5 BASIC5.17□□□□□ -1.58
TRIM39Q9HCM9 RPS18P6-201ENST00000476880 458 ntBASIC5.17□□□□□ -1.58
TRIM39Q9HCM9 RBM43P1-201ENST00000476891 1081 ntBASIC5.17□□□□□ -1.58
TRIM39Q9HCM9 AC016746.1-201ENST00000489557 831 ntTSL 2 BASIC5.17□□□□□ -1.58
TRIM39Q9HCM9 RPL23AP72-201ENST00000492447 435 ntBASIC5.17□□□□□ -1.58
TRIM39Q9HCM9 RPL15P21-201ENST00000495592 567 ntBASIC5.17□□□□□ -1.58
TRIM39Q9HCM9 ENSA-211ENST00000503345 793 ntTSL 3 BASIC5.17□□□□□ -1.58
TRIM39Q9HCM9 PRDX4P1-201ENST00000507189 574 ntBASIC5.17□□□□□ -1.58
TRIM39Q9HCM9 PTGES3P3-201ENST00000511479 482 ntBASIC5.17□□□□□ -1.58
TRIM39Q9HCM9 AC097515.1-202ENST00000511818 371 ntTSL 3 BASIC5.17□□□□□ -1.58
TRIM39Q9HCM9 AC097460.1-201ENST00000514624 590 ntTSL 3 BASIC5.17□□□□□ -1.58
TRIM39Q9HCM9 LINC02364-201ENST00000514802 687 ntTSL 2 BASIC5.17□□□□□ -1.58
TRIM39Q9HCM9 SNORD116-26-201ENST00000516006 96 ntBASIC5.17□□□□□ -1.58
TRIM39Q9HCM9 RN7SKP277-201ENST00000516895 283 ntBASIC5.17□□□□□ -1.58
TRIM39Q9HCM9 AC099805.1-203ENST00000518177 773 ntTSL 2 BASIC5.17□□□□□ -1.58
TRIM39Q9HCM9 AC083923.2-203ENST00000520512 372 ntTSL 3 BASIC5.17□□□□□ -1.58
TRIM39Q9HCM9 SNHG1-204ENST00000537068 629 ntTSL 5 BASIC5.17□□□□□ -1.58
TRIM39Q9HCM9 AL359233.1-201ENST00000554029 364 ntTSL 3 BASIC5.17□□□□□ -1.58
TRIM39Q9HCM9 RPS3AP4-201ENST00000555161 764 ntBASIC5.17□□□□□ -1.58
TRIM39Q9HCM9 AC007599.2-201ENST00000573040 493 ntTSL 5 BASIC5.17□□□□□ -1.58
TRIM39Q9HCM9 AC099489.2-201ENST00000574976 260 ntBASIC5.17□□□□□ -1.58
TRIM39Q9HCM9 LINC01905-202ENST00000588139 459 ntTSL 3 BASIC5.17□□□□□ -1.58
TRIM39Q9HCM9 LINC01791-201ENST00000589511 677 ntTSL 5 BASIC5.17□□□□□ -1.58
TRIM39Q9HCM9 MIR7515HG-254ENST00000593269 943 ntTSL 5 BASIC5.17□□□□□ -1.58
TRIM39Q9HCM9 AC135012.2-201ENST00000600234 479 ntTSL 2 BASIC5.17□□□□□ -1.58
TRIM39Q9HCM9 AL355812.1-201ENST00000603215 216 ntBASIC5.17□□□□□ -1.58
TRIM39Q9HCM9 AC008814.1-201ENST00000603797 406 ntBASIC5.17□□□□□ -1.58
TRIM39Q9HCM9 AC013244.1-201ENST00000604279 193 ntBASIC5.17□□□□□ -1.58
TRIM39Q9HCM9 C8orf59-212ENST00000615697 483 ntAPPRIS P1 TSL 2 BASIC5.17□□□□□ -1.58
TRIM39Q9HCM9 AC099494.2-201ENST00000623371 978 ntBASIC5.17□□□□□ -1.58
TRIM39Q9HCM9 MYO16-201ENST00000251041 3492 ntTSL 5 BASIC5.17□□□□□ -1.58
TRIM39Q9HCM9 DST-202ENST00000312431 17756 ntAPPRIS P2 TSL 5 BASIC5.17□□□□□ -1.58
TRIM39Q9HCM9 AL034549.2-201ENST00000618285 3373 ntBASIC5.17□□□□□ -1.58
TRIM39Q9HCM9 OR4F5-202ENST00000641515 2618 ntAPPRIS P1 BASIC5.17□□□□□ -1.58
TRIM39Q9HCM9 PTPRD-201ENST00000355233 8251 ntTSL 1 (best) BASIC5.17□□□□□ -1.58
TRIM39Q9HCM9 MTM1-203ENST00000370396 3593 ntAPPRIS P1 TSL 1 (best) BASIC5.17□□□□□ -1.58
TRIM39Q9HCM9 TMEM99-201ENST00000301665 2058 ntAPPRIS P2 TSL 2 BASIC5.17□□□□□ -1.58
TRIM39Q9HCM9 UQCRC2P1-201ENST00000417777 1332 ntBASIC5.17□□□□□ -1.58
TRIM39Q9HCM9 ZNF652P1-201ENST00000442420 1309 ntBASIC5.17□□□□□ -1.58
TRIM39Q9HCM9 SON-204ENST00000381692 2463 ntTSL 1 (best) BASIC5.17□□□□□ -1.58
TRIM39Q9HCM9 GJA9-201ENST00000357771 1799 ntAPPRIS P1 TSL 1 (best) BASIC5.16□□□□□ -1.58
TRIM39Q9HCM9 EPHA7-202ENST00000369303 6588 ntAPPRIS P1 TSL 1 (best) BASIC5.16□□□□□ -1.58
TRIM39Q9HCM9 CTXN2-201ENST00000417307 2828 ntAPPRIS P1 TSL 1 (best) BASIC5.16□□□□□ -1.58
TRIM39Q9HCM9 CENPI-202ENST00000372927 3262 ntAPPRIS P3 TSL 5 BASIC5.16□□□□□ -1.58
TRIM39Q9HCM9 LRRC49-222ENST00000560158 1898 ntTSL 5 BASIC5.16□□□□□ -1.58
TRIM39Q9HCM9 MTUS1-203ENST00000381861 3996 ntAPPRIS P4 TSL 2 BASIC5.16□□□□□ -1.58
TRIM39Q9HCM9 DYNC2H1-201ENST00000334267 2984 ntTSL 1 (best) BASIC5.16□□□□□ -1.58
TRIM39Q9HCM9 Y_RNA.234-201ENST00000364409 97 ntBASIC5.16□□□□□ -1.58
TRIM39Q9HCM9 MIR589-201ENST00000385238 99 ntBASIC5.16□□□□□ -1.58
TRIM39Q9HCM9 SNORD115-47-201ENST00000391226 86 ntBASIC5.16□□□□□ -1.58
Retrieved 100 of 98,524 protein–RNA pairs in 107.3 ms