Protein–RNA interactions for Protein: Q9BWF2

TRAIP, E3 ubiquitin-protein ligase TRAIP, humanhuman

Predictions only

Length 469 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAIPQ9BWF2 AL662791.1-201ENST00000441992 928 ntBASIC6.24□□□□□ -1.41
TRAIPQ9BWF2 NFU1P2-201ENST00000448700 469 ntBASIC6.24□□□□□ -1.41
TRAIPQ9BWF2 AP006216.2-201ENST00000457746 333 ntTSL 5 BASIC6.24□□□□□ -1.41
TRAIPQ9BWF2 RNU1-88P-201ENST00000459274 128 ntBASIC6.24□□□□□ -1.41
TRAIPQ9BWF2 SNORD108-201ENST00000459332 71 ntBASIC6.24□□□□□ -1.41
TRAIPQ9BWF2 VN1R5-201ENST00000472952 1239 ntAPPRIS P1 BASIC6.24□□□□□ -1.41
TRAIPQ9BWF2 C4orf33-204ENST00000502887 1126 ntTSL 1 (best) BASIC6.24□□□□□ -1.41
TRAIPQ9BWF2 AC016550.2-202ENST00000511940 581 ntTSL 2 BASIC6.24□□□□□ -1.41
TRAIPQ9BWF2 RNU6-1281P-201ENST00000516223 105 ntBASIC6.24□□□□□ -1.41
TRAIPQ9BWF2 C11orf1-204ENST00000530214 599 ntTSL 5 BASIC6.24□□□□□ -1.41
TRAIPQ9BWF2 LINC02129-201ENST00000564381 692 ntTSL 5 BASIC6.24□□□□□ -1.41
TRAIPQ9BWF2 AL163952.1-202ENST00000569625 600 ntBASIC6.24□□□□□ -1.41
TRAIPQ9BWF2 MIR548S-201ENST00000581352 82 ntBASIC6.24□□□□□ -1.41
TRAIPQ9BWF2 AC005899.1-201ENST00000584125 563 ntTSL 5 BASIC6.24□□□□□ -1.41
TRAIPQ9BWF2 PRPF19P1-201ENST00000584766 898 ntBASIC6.24□□□□□ -1.41
TRAIPQ9BWF2 NRBF2P5-201ENST00000603087 788 ntBASIC6.24□□□□□ -1.41
TRAIPQ9BWF2 SUMO2P15-201ENST00000604285 278 ntBASIC6.24□□□□□ -1.41
TRAIPQ9BWF2 AC107031.1-201ENST00000604939 347 ntTSL 2 BASIC6.24□□□□□ -1.41
TRAIPQ9BWF2 LINC02343-201ENST00000605909 573 ntTSL 4 BASIC6.24□□□□□ -1.41
TRAIPQ9BWF2 EIF3FP1-201ENST00000613970 806 ntBASIC6.24□□□□□ -1.41
TRAIPQ9BWF2 MIR6130-201ENST00000619419 109 ntBASIC6.24□□□□□ -1.41
TRAIPQ9BWF2 AC005609.4-201ENST00000625071 447 ntBASIC6.24□□□□□ -1.41
TRAIPQ9BWF2 LINC00850-201ENST00000629221 685 ntTSL 1 (best) BASIC6.24□□□□□ -1.41
TRAIPQ9BWF2 MIR4275-201ENST00000636486 87 ntBASIC6.24□□□□□ -1.41
TRAIPQ9BWF2 ESRRG-205ENST00000366937 5365 ntTSL 1 (best) BASIC6.24□□□□□ -1.41
TRAIPQ9BWF2 OR9K1P-202ENST00000641111 3217 ntBASIC6.24□□□□□ -1.41
TRAIPQ9BWF2 ZFYVE16-206ENST00000510158 6680 ntAPPRIS P1 TSL 1 (best) BASIC6.24□□□□□ -1.41
TRAIPQ9BWF2 CLUL1-205ENST00000579494 1742 ntAPPRIS P1 TSL 1 (best) BASIC6.24□□□□□ -1.41
TRAIPQ9BWF2 C17orf105-201ENST00000449302 3753 ntAPPRIS P1 TSL 1 (best) BASIC6.24□□□□□ -1.41
TRAIPQ9BWF2 VBP1-204ENST00000625964 1547 ntTSL 5 BASIC6.24□□□□□ -1.41
TRAIPQ9BWF2 ZNF432-202ENST00000594154 4513 ntAPPRIS P1 TSL 1 (best) BASIC6.24□□□□□ -1.41
TRAIPQ9BWF2 AL158066.1-201ENST00000451298 3796 ntTSL 2 BASIC6.23□□□□□ -1.41
TRAIPQ9BWF2 DCDC1-203ENST00000406071 4758 ntAPPRIS P2 TSL 5 BASIC6.23□□□□□ -1.41
TRAIPQ9BWF2 NPHP1-204ENST00000417665 2246 ntTSL 5 BASIC6.23□□□□□ -1.41
TRAIPQ9BWF2 MKKS-202ENST00000399054 2663 ntAPPRIS P1 TSL 1 (best) BASIC6.23□□□□□ -1.41
TRAIPQ9BWF2 AC016576.1-201ENST00000637153 3585 ntTSL 5 BASIC6.23□□□□□ -1.41
TRAIPQ9BWF2 RBBP6-203ENST00000381039 3384 ntTSL 1 (best) BASIC6.23□□□□□ -1.41
TRAIPQ9BWF2 SELENOI-205ENST00000613142 8126 ntAPPRIS ALT1 TSL 5 BASIC6.23□□□□□ -1.41
TRAIPQ9BWF2 OR1A1-202ENST00000641322 3743 ntAPPRIS P1 BASIC6.23□□□□□ -1.41
TRAIPQ9BWF2 ACKR4-201ENST00000249887 1914 ntAPPRIS P1 TSL 1 (best) BASIC6.23□□□□□ -1.41
TRAIPQ9BWF2 ZNF677-201ENST00000333952 3422 ntAPPRIS P1 TSL 2 BASIC6.23□□□□□ -1.41
TRAIPQ9BWF2 KRT222-202ENST00000394052 1712 ntAPPRIS P1 TSL 1 (best) BASIC6.23□□□□□ -1.41
TRAIPQ9BWF2 EIF2A-201ENST00000273435 2083 ntAPPRIS ALT1 TSL 1 (best) BASIC6.23□□□□□ -1.41
TRAIPQ9BWF2 KIAA1841-205ENST00000453873 4294 ntAPPRIS P1 TSL 5 BASIC6.23□□□□□ -1.41
TRAIPQ9BWF2 TNP2-201ENST00000312693 626 ntAPPRIS P1 TSL 1 (best) BASIC6.23□□□□□ -1.41
TRAIPQ9BWF2 RNU6-1155P-201ENST00000363554 107 ntBASIC6.23□□□□□ -1.41
TRAIPQ9BWF2 RNU6-780P-201ENST00000391030 104 ntBASIC6.23□□□□□ -1.41
TRAIPQ9BWF2 AC092111.3-201ENST00000402465 496 ntAPPRIS P1 TSL 2 BASIC6.23□□□□□ -1.41
TRAIPQ9BWF2 MIR1178-201ENST00000408396 91 ntBASIC6.23□□□□□ -1.41
TRAIPQ9BWF2 NPM1P4-201ENST00000414095 812 ntBASIC6.23□□□□□ -1.41
TRAIPQ9BWF2 UBE2FP1-201ENST00000416536 447 ntBASIC6.23□□□□□ -1.41
TRAIPQ9BWF2 MRPL50P2-201ENST00000416821 482 ntBASIC6.23□□□□□ -1.41
TRAIPQ9BWF2 AC005062.1-206ENST00000424516 710 ntTSL 3 BASIC6.23□□□□□ -1.41
TRAIPQ9BWF2 LINC01351-201ENST00000424735 526 ntTSL 2 BASIC6.23□□□□□ -1.41
TRAIPQ9BWF2 BX005214.1-201ENST00000427327 476 ntTSL 5 BASIC6.23□□□□□ -1.41
TRAIPQ9BWF2 AL449983.1-201ENST00000430640 414 ntTSL 2 BASIC6.23□□□□□ -1.41
TRAIPQ9BWF2 Z83839.2-201ENST00000436294 274 ntTSL 5 BASIC6.23□□□□□ -1.41
TRAIPQ9BWF2 MACROD2-IT1-201ENST00000448536 665 ntTSL 5 BASIC6.23□□□□□ -1.41
TRAIPQ9BWF2 AL450023.1-201ENST00000450868 751 ntBASIC6.23□□□□□ -1.41
TRAIPQ9BWF2 AC007967.1-201ENST00000455422 1159 ntBASIC6.23□□□□□ -1.41
TRAIPQ9BWF2 AC004129.2-201ENST00000457229 287 ntBASIC6.23□□□□□ -1.41
TRAIPQ9BWF2 AC011225.1-201ENST00000457751 369 ntBASIC6.23□□□□□ -1.41
TRAIPQ9BWF2 AC006967.1-201ENST00000467608 589 ntBASIC6.23□□□□□ -1.41
TRAIPQ9BWF2 RN7SL184P-201ENST00000488308 297 ntBASIC6.23□□□□□ -1.41
TRAIPQ9BWF2 FAM92A1P2-202ENST00000504766 877 ntBASIC6.23□□□□□ -1.41
TRAIPQ9BWF2 AC079467.1-201ENST00000508512 503 ntTSL 3 BASIC6.23□□□□□ -1.41
TRAIPQ9BWF2 AC124854.1-202ENST00000513779 339 ntTSL 3 BASIC6.23□□□□□ -1.41
TRAIPQ9BWF2 BX510359.5-201ENST00000515651 304 ntBASIC6.23□□□□□ -1.41
TRAIPQ9BWF2 AC078899.1-201ENST00000521432 1185 ntBASIC6.23□□□□□ -1.41
TRAIPQ9BWF2 AC136777.2-201ENST00000522979 358 ntBASIC6.23□□□□□ -1.41
TRAIPQ9BWF2 UQCRB-209ENST00000523920 695 ntTSL 5 BASIC6.23□□□□□ -1.41
TRAIPQ9BWF2 ST3GAL3-233ENST00000531816 344 ntTSL 1 (best) BASIC6.23□□□□□ -1.41
TRAIPQ9BWF2 AL163932.1-201ENST00000555776 542 ntTSL 4 BASIC6.23□□□□□ -1.41
TRAIPQ9BWF2 PWRN1-204ENST00000565241 480 ntTSL 2 BASIC6.23□□□□□ -1.41
TRAIPQ9BWF2 HMGB1P6-201ENST00000569046 646 ntBASIC6.23□□□□□ -1.41
TRAIPQ9BWF2 AC105224.1-201ENST00000587055 421 ntBASIC6.23□□□□□ -1.41
TRAIPQ9BWF2 AC067959.1-201ENST00000604334 379 ntBASIC6.23□□□□□ -1.41
TRAIPQ9BWF2 AC007621.1-201ENST00000604544 437 ntBASIC6.23□□□□□ -1.41
TRAIPQ9BWF2 AL022394.1-201ENST00000606979 292 ntBASIC6.23□□□□□ -1.41
TRAIPQ9BWF2 AL445222.1-201ENST00000607259 628 ntBASIC6.23□□□□□ -1.41
TRAIPQ9BWF2 AC068506.1-202ENST00000613388 545 ntTSL 3 BASIC6.23□□□□□ -1.41
TRAIPQ9BWF2 AL590491.2-201ENST00000614608 499 ntTSL 5 BASIC6.23□□□□□ -1.41
TRAIPQ9BWF2 AC002553.4-201ENST00000616896 331 ntBASIC6.23□□□□□ -1.41
TRAIPQ9BWF2 CYLC1-202ENST00000621735 379 ntAPPRIS ALT2 TSL 3 BASIC6.23□□□□□ -1.41
TRAIPQ9BWF2 CNGA1-207ENST00000514170 2837 ntAPPRIS P3 TSL 5 BASIC6.23□□□□□ -1.41
TRAIPQ9BWF2 CNTN1-208ENST00000551295 5557 ntAPPRIS P1 TSL 1 (best) BASIC6.23□□□□□ -1.41
TRAIPQ9BWF2 GABRA1-215ENST00000636573 2262 ntAPPRIS P1 TSL 5 BASIC6.23□□□□□ -1.41
TRAIPQ9BWF2 PFKFB2-202ENST00000367080 7094 ntAPPRIS P1 TSL 1 (best) BASIC6.22□□□□□ -1.41
TRAIPQ9BWF2 LAMTOR3-202ENST00000499666 4226 ntAPPRIS P1 TSL 1 (best) BASIC6.22□□□□□ -1.41
TRAIPQ9BWF2 SOX5-216ENST00000546136 6975 ntAPPRIS P3 TSL 5 BASIC6.22□□□□□ -1.41
TRAIPQ9BWF2 CD86-204ENST00000469710 1604 ntTSL 2 BASIC6.22□□□□□ -1.41
TRAIPQ9BWF2 SCAPER-207ENST00000563290 5028 ntAPPRIS P1 TSL 5 BASIC6.22□□□□□ -1.41
TRAIPQ9BWF2 TTI1-203ENST00000449821 3791 ntAPPRIS P1 TSL 2 BASIC6.22□□□□□ -1.41
TRAIPQ9BWF2 RIMS2-209ENST00000507740 8002 ntTSL 1 (best) BASIC6.22□□□□□ -1.41
TRAIPQ9BWF2 AGBL4-201ENST00000334103 881 ntTSL 5 BASIC6.22□□□□□ -1.41
TRAIPQ9BWF2 NAMPT-202ENST00000354289 1213 ntTSL 1 (best) BASIC6.22□□□□□ -1.41
TRAIPQ9BWF2 AC106870.1-201ENST00000359823 200 ntTSL 3 BASIC6.22□□□□□ -1.41
TRAIPQ9BWF2 Y_RNA.295-201ENST00000364918 102 ntBASIC6.22□□□□□ -1.41
TRAIPQ9BWF2 RNU6-483P-201ENST00000384088 108 ntBASIC6.22□□□□□ -1.41
TRAIPQ9BWF2 AL583834.1-201ENST00000406943 343 ntBASIC6.22□□□□□ -1.41
Retrieved 100 of 98,524 protein–RNA pairs in 87.8 ms