Protein–RNA interactions for Protein: Q99909

SSX3, Protein SSX3, humanhuman

Predictions only

Length 188 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SSX3Q99909 RPL23AP25-201ENST00000430973 463 ntBASIC3.61□□□□□ -1.83
SSX3Q99909 AL139824.1-201ENST00000431983 453 ntTSL 3 BASIC3.61□□□□□ -1.83
SSX3Q99909 AL136084.2-202ENST00000433997 353 ntTSL 2 BASIC3.61□□□□□ -1.83
SSX3Q99909 AL691497.1-201ENST00000443270 449 ntTSL 2 BASIC3.61□□□□□ -1.83
SSX3Q99909 RPL23AP43-201ENST00000446445 471 ntBASIC3.61□□□□□ -1.83
SSX3Q99909 BBIP1-206ENST00000447005 727 ntAPPRIS P1 TSL 2 BASIC3.61□□□□□ -1.83
SSX3Q99909 AC093157.1-204ENST00000454721 753 ntTSL 3 BASIC3.61□□□□□ -1.83
SSX3Q99909 RPS27AP17-201ENST00000463344 455 ntBASIC3.61□□□□□ -1.83
SSX3Q99909 RN7SL810P-201ENST00000493031 276 ntBASIC3.61□□□□□ -1.83
SSX3Q99909 OR5H5P-201ENST00000503164 928 ntBASIC3.61□□□□□ -1.83
SSX3Q99909 AC084024.2-201ENST00000503480 791 ntBASIC3.61□□□□□ -1.83
SSX3Q99909 RHOBTB3-204ENST00000504179 883 ntTSL 5 BASIC3.61□□□□□ -1.83
SSX3Q99909 HMGB1P22-201ENST00000505315 124 ntBASIC3.61□□□□□ -1.83
SSX3Q99909 AC016687.2-203ENST00000506650 578 ntTSL 3 BASIC3.61□□□□□ -1.83
SSX3Q99909 PAIP2-205ENST00000510080 858 ntAPPRIS P1 TSL 1 (best) BASIC3.61□□□□□ -1.83
SSX3Q99909 TPT1P8-201ENST00000510120 555 ntBASIC3.61□□□□□ -1.83
SSX3Q99909 RN7SKP157-201ENST00000516174 282 ntBASIC3.61□□□□□ -1.83
SSX3Q99909 SNORA31.20-201ENST00000517111 133 ntBASIC3.61□□□□□ -1.83
SSX3Q99909 AC117834.1-202ENST00000521203 561 ntTSL 4 BASIC3.61□□□□□ -1.83
SSX3Q99909 OR10V3P-201ENST00000525712 725 ntBASIC3.61□□□□□ -1.83
SSX3Q99909 SAMD15-202ENST00000533095 412 ntTSL 5 BASIC3.61□□□□□ -1.83
SSX3Q99909 AC125603.1-201ENST00000552718 366 ntTSL 3 BASIC3.61□□□□□ -1.83
SSX3Q99909 AC068831.4-201ENST00000556118 109 ntBASIC3.61□□□□□ -1.83
SSX3Q99909 AC069366.1-201ENST00000583159 838 ntBASIC3.61□□□□□ -1.83
SSX3Q99909 AC097467.3-204ENST00000595229 827 ntTSL 5 BASIC3.61□□□□□ -1.83
SSX3Q99909 AC007308.1-201ENST00000608856 373 ntTSL 3 BASIC3.61□□□□□ -1.83
SSX3Q99909 AC092954.1-201ENST00000609121 445 ntBASIC3.61□□□□□ -1.83
SSX3Q99909 AL031666.3-201ENST00000609320 1006 ntBASIC3.61□□□□□ -1.83
SSX3Q99909 AL590282.1-201ENST00000610379 1136 ntBASIC3.61□□□□□ -1.83
SSX3Q99909 MLECP1-201ENST00000615893 709 ntBASIC3.61□□□□□ -1.83
SSX3Q99909 AL138721.1-201ENST00000616756 179 ntBASIC3.61□□□□□ -1.83
SSX3Q99909 KIAA1524-208ENST00000625495 147 ntTSL 5 BASIC3.61□□□□□ -1.83
SSX3Q99909 BTG3-AS1-201ENST00000626994 552 ntTSL 4 BASIC3.61□□□□□ -1.83
SSX3Q99909 MARCH6-215ENST00000640713 231 ntTSL 5 BASIC3.61□□□□□ -1.83
SSX3Q99909 PPIP5K2-215ENST00000613674 4933 ntAPPRIS ALT2 TSL 2 BASIC3.61□□□□□ -1.83
SSX3Q99909 CPHL1P-201ENST00000461341 3407 ntBASIC3.61□□□□□ -1.83
SSX3Q99909 MUC15-204ENST00000527569 1386 ntTSL 1 (best) BASIC3.61□□□□□ -1.83
SSX3Q99909 CPB2-201ENST00000181383 1717 ntAPPRIS P1 TSL 1 (best) BASIC3.61□□□□□ -1.83
SSX3Q99909 C6orf10-205ENST00000527965 2076 ntAPPRIS ALT2 TSL 2 BASIC3.61□□□□□ -1.83
SSX3Q99909 NCK1-204ENST00000469404 2403 ntTSL 2 BASIC3.61□□□□□ -1.83
SSX3Q99909 GALNT1-201ENST00000269195 3847 ntAPPRIS P1 TSL 1 (best) BASIC3.61□□□□□ -1.83
SSX3Q99909 TMEM71-202ENST00000377901 1861 ntAPPRIS ALT2 TSL 1 (best) BASIC3.6□□□□□ -1.83
SSX3Q99909 AC106754.1-201ENST00000562632 1513 ntBASIC3.6□□□□□ -1.83
SSX3Q99909 XRN1-202ENST00000392981 5383 ntAPPRIS ALT1 TSL 1 (best) BASIC3.6□□□□□ -1.83
SSX3Q99909 CCDC91-201ENST00000381259 2334 ntAPPRIS P1 TSL 1 (best) BASIC3.6□□□□□ -1.83
SSX3Q99909 LINC01239-202ENST00000436786 2347 ntTSL 2 BASIC3.6□□□□□ -1.83
SSX3Q99909 LINC00622-201ENST00000562811 1570 ntBASIC3.6□□□□□ -1.83
SSX3Q99909 SLC30A6-203ENST00000379343 2354 ntTSL 1 (best) BASIC3.6□□□□□ -1.83
SSX3Q99909 C12orf60-201ENST00000330828 1684 ntAPPRIS P1 TSL 1 (best) BASIC3.6□□□□□ -1.83
SSX3Q99909 LGALS13-201ENST00000221797 602 ntAPPRIS P2 TSL 1 (best) BASIC3.6□□□□□ -1.83
SSX3Q99909 snoZ40.1-201ENST00000364540 72 ntBASIC3.6□□□□□ -1.83
SSX3Q99909 RNU1-44P-201ENST00000384453 163 ntBASIC3.6□□□□□ -1.83
SSX3Q99909 TRAV24-201ENST00000390453 343 ntAPPRIS P1 BASIC3.6□□□□□ -1.83
SSX3Q99909 RNU6-328P-201ENST00000390887 106 ntBASIC3.6□□□□□ -1.83
SSX3Q99909 RNU2-71P-201ENST00000411395 189 ntBASIC3.6□□□□□ -1.83
SSX3Q99909 LIMS1-AS1-201ENST00000411710 477 ntTSL 3 BASIC3.6□□□□□ -1.83
SSX3Q99909 AC092634.6-201ENST00000418558 192 ntBASIC3.6□□□□□ -1.83
SSX3Q99909 AC106883.1-201ENST00000418805 562 ntBASIC3.6□□□□□ -1.83
SSX3Q99909 RAD23BP1-201ENST00000421404 1227 ntBASIC3.6□□□□□ -1.83
SSX3Q99909 UBXN7-204ENST00000428095 1173 ntTSL 1 (best) BASIC3.6□□□□□ -1.83
SSX3Q99909 RPS29P17-201ENST00000430795 166 ntBASIC3.6□□□□□ -1.83
SSX3Q99909 AC091390.1-201ENST00000433904 331 ntBASIC3.6□□□□□ -1.83
SSX3Q99909 GTF2IP7-202ENST00000436677 309 ntBASIC3.6□□□□□ -1.83
SSX3Q99909 HMGB1P12-201ENST00000438594 598 ntBASIC3.6□□□□□ -1.83
SSX3Q99909 CBX1P1-201ENST00000440184 427 ntBASIC3.6□□□□□ -1.83
SSX3Q99909 AC004854.1-201ENST00000440356 349 ntBASIC3.6□□□□□ -1.83
SSX3Q99909 RPL23AP16-201ENST00000441715 421 ntBASIC3.6□□□□□ -1.83
SSX3Q99909 PHBP16-201ENST00000446318 950 ntBASIC3.6□□□□□ -1.83
SSX3Q99909 AL121718.1-201ENST00000449463 387 ntTSL 3 BASIC3.6□□□□□ -1.83
SSX3Q99909 AL355613.1-201ENST00000451856 480 ntTSL 2 BASIC3.6□□□□□ -1.83
SSX3Q99909 AC112229.2-201ENST00000456683 476 ntTSL 5 BASIC3.6□□□□□ -1.83
SSX3Q99909 AC026355.2-201ENST00000456755 723 ntTSL 2 BASIC3.6□□□□□ -1.83
SSX3Q99909 HMGN2P16-201ENST00000456802 261 ntBASIC3.6□□□□□ -1.83
SSX3Q99909 MTCO3P2-201ENST00000457365 171 ntBASIC3.6□□□□□ -1.83
SSX3Q99909 U3.44-201ENST00000458938 192 ntBASIC3.6□□□□□ -1.83
SSX3Q99909 AC093267.1-201ENST00000489176 961 ntBASIC3.6□□□□□ -1.83
SSX3Q99909 LINC02118-201ENST00000505899 407 ntTSL 3 BASIC3.6□□□□□ -1.83
SSX3Q99909 AC108043.1-201ENST00000512696 574 ntBASIC3.6□□□□□ -1.83
SSX3Q99909 SNORA48.10-201ENST00000516965 160 ntBASIC3.6□□□□□ -1.83
SSX3Q99909 ZFAND1-208ENST00000519523 698 ntTSL 2 BASIC3.6□□□□□ -1.83
SSX3Q99909 AP001189.2-201ENST00000527320 189 ntBASIC3.6□□□□□ -1.83
SSX3Q99909 SMILR-201ENST00000533992 553 ntTSL 4 BASIC3.6□□□□□ -1.83
SSX3Q99909 AL359237.1-202ENST00000556168 487 ntTSL 5 BASIC3.6□□□□□ -1.83
SSX3Q99909 PARP1P2-201ENST00000556806 195 ntBASIC3.6□□□□□ -1.83
SSX3Q99909 AC016597.1-201ENST00000564893 528 ntTSL 4 BASIC3.6□□□□□ -1.83
SSX3Q99909 AL157402.2-201ENST00000566394 416 ntTSL 3 BASIC3.6□□□□□ -1.83
SSX3Q99909 MTND3P13-201ENST00000574391 343 ntBASIC3.6□□□□□ -1.83
SSX3Q99909 BNIP3P40-201ENST00000596017 556 ntBASIC3.6□□□□□ -1.83
SSX3Q99909 AP001160.4-201ENST00000596971 382 ntBASIC3.6□□□□□ -1.83
SSX3Q99909 BPIFA4P-203ENST00000603168 689 ntBASIC3.6□□□□□ -1.83
SSX3Q99909 AC090948.3-201ENST00000606713 551 ntTSL 4 BASIC3.6□□□□□ -1.83
SSX3Q99909 AL157392.4-201ENST00000609756 345 ntBASIC3.6□□□□□ -1.83
SSX3Q99909 AC006023.2-201ENST00000609916 167 ntBASIC3.6□□□□□ -1.83
SSX3Q99909 AC083809.1-201ENST00000615051 472 ntBASIC3.6□□□□□ -1.83
SSX3Q99909 U7.8-201ENST00000619968 63 ntBASIC3.6□□□□□ -1.83
SSX3Q99909 AC090772.4-201ENST00000623599 362 ntBASIC3.6□□□□□ -1.83
SSX3Q99909 AC011944.2-201ENST00000624440 683 ntBASIC3.6□□□□□ -1.83
SSX3Q99909 AL359313.1-202ENST00000635073 544 ntTSL 4 BASIC3.6□□□□□ -1.83
SSX3Q99909 MIR6830-201ENST00000636015 70 ntBASIC3.6□□□□□ -1.83
SSX3Q99909 U6.98-201ENST00000637157 84 ntBASIC3.6□□□□□ -1.83
Retrieved 100 of 98,524 protein–RNA pairs in 111.2 ms