Protein–RNA interactions for Protein: Q96M95

CCDC42, Coiled-coil domain-containing protein 42, humanhuman

Predictions only

Length 316 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC42Q96M95 AC104619.2-201ENST00000514293 646 ntTSL 3 BASIC3.36□□□□□ -1.87
CCDC42Q96M95 AC026403.1-201ENST00000518938 295 ntBASIC3.36□□□□□ -1.87
CCDC42Q96M95 AC005951.1-201ENST00000576706 485 ntBASIC3.36□□□□□ -1.87
CCDC42Q96M95 AC090371.2-203ENST00000578782 473 ntTSL 3 BASIC3.36□□□□□ -1.87
CCDC42Q96M95 LINC01482-203ENST00000589610 468 ntTSL 3 BASIC3.36□□□□□ -1.87
CCDC42Q96M95 AL354950.1-201ENST00000614150 568 ntBASIC3.36□□□□□ -1.87
CCDC42Q96M95 BCLAF1-205ENST00000527536 5371 ntTSL 5 BASIC3.36□□□□□ -1.87
CCDC42Q96M95 CYP3A7-201ENST00000336374 1971 ntAPPRIS P1 TSL 1 (best) BASIC3.36□□□□□ -1.87
CCDC42Q96M95 VSTM2A-OT1-201ENST00000456049 3031 ntTSL 1 (best) BASIC3.36□□□□□ -1.87
CCDC42Q96M95 AL161912.2-201ENST00000565707 3007 ntBASIC3.36□□□□□ -1.87
CCDC42Q96M95 MTND5P7-201ENST00000413558 1798 ntBASIC3.35□□□□□ -1.87
CCDC42Q96M95 AC008264.2-201ENST00000610193 3731 ntBASIC3.35□□□□□ -1.87
CCDC42Q96M95 ANGPTL1-201ENST00000234816 3348 ntAPPRIS P1 TSL 1 (best) BASIC3.35□□□□□ -1.87
CCDC42Q96M95 AC234772.1-201ENST00000377927 937 ntBASIC3.35□□□□□ -1.87
CCDC42Q96M95 GSTA12P-201ENST00000402398 508 ntBASIC3.35□□□□□ -1.87
CCDC42Q96M95 MIR1193-201ENST00000408109 78 ntBASIC3.35□□□□□ -1.87
CCDC42Q96M95 RNA5SP274-201ENST00000410484 108 ntBASIC3.35□□□□□ -1.87
CCDC42Q96M95 RN7SKP58-201ENST00000411010 305 ntBASIC3.35□□□□□ -1.87
CCDC42Q96M95 RNA5SP498-201ENST00000411342 120 ntBASIC3.35□□□□□ -1.87
CCDC42Q96M95 OFD1P1Y-201ENST00000411756 1225 ntBASIC3.35□□□□□ -1.87
CCDC42Q96M95 AC063979.1-201ENST00000415539 377 ntBASIC3.35□□□□□ -1.87
CCDC42Q96M95 AL589765.2-201ENST00000420382 424 ntTSL 3 BASIC3.35□□□□□ -1.87
CCDC42Q96M95 SLC8A1-AS1-205ENST00000435515 497 ntTSL 3 BASIC3.35□□□□□ -1.87
CCDC42Q96M95 AL356859.1-201ENST00000449180 414 ntTSL 5 BASIC3.35□□□□□ -1.87
CCDC42Q96M95 TPMTP4-201ENST00000450749 678 ntBASIC3.35□□□□□ -1.87
CCDC42Q96M95 LINC02027-201ENST00000482617 596 ntTSL 5 BASIC3.35□□□□□ -1.87
CCDC42Q96M95 AC078918.1-201ENST00000498515 228 ntBASIC3.35□□□□□ -1.87
CCDC42Q96M95 CSN1S1-204ENST00000507772 895 ntAPPRIS ALT2 TSL 5 BASIC3.35□□□□□ -1.87
CCDC42Q96M95 AC008957.1-201ENST00000510740 478 ntTSL 3 BASIC3.35□□□□□ -1.87
CCDC42Q96M95 AC109466.1-204ENST00000519570 717 ntTSL 3 BASIC3.35□□□□□ -1.87
CCDC42Q96M95 AC100871.2-201ENST00000522005 327 ntTSL 3 BASIC3.35□□□□□ -1.87
CCDC42Q96M95 LINC00508-201ENST00000538901 194 ntTSL 5 BASIC3.35□□□□□ -1.87
CCDC42Q96M95 AC007458.1-201ENST00000542812 373 ntBASIC3.35□□□□□ -1.87
CCDC42Q96M95 RPL21P12-201ENST00000559810 515 ntBASIC3.35□□□□□ -1.87
CCDC42Q96M95 LINC02098-201ENST00000608492 475 ntTSL 3 BASIC3.35□□□□□ -1.87
CCDC42Q96M95 AC055764.2-201ENST00000610089 670 ntBASIC3.35□□□□□ -1.87
CCDC42Q96M95 AC019176.2-201ENST00000611579 315 ntBASIC3.35□□□□□ -1.87
CCDC42Q96M95 DNAJC10-209ENST00000613960 1010 ntTSL 5 BASIC3.35□□□□□ -1.87
CCDC42Q96M95 OR2L3-201ENST00000359959 2792 ntAPPRIS P1 BASIC3.35□□□□□ -1.87
CCDC42Q96M95 HDX-201ENST00000297977 6200 ntAPPRIS P1 TSL 1 (best) BASIC3.35□□□□□ -1.87
CCDC42Q96M95 FAM35CP-201ENST00000554755 2470 ntBASIC3.35□□□□□ -1.87
CCDC42Q96M95 RAPGEF6-202ENST00000308008 4176 ntTSL 1 (best) BASIC3.34□□□□□ -1.87
CCDC42Q96M95 DCLRE1A-202ENST00000369305 4241 ntAPPRIS P1 TSL 5 BASIC3.34□□□□□ -1.87
CCDC42Q96M95 NUP35-201ENST00000295119 1633 ntAPPRIS P1 TSL 1 (best) BASIC3.34□□□□□ -1.87
CCDC42Q96M95 GMFB-208ENST00000554908 6721 ntTSL 1 (best) BASIC3.34□□□□□ -1.87
CCDC42Q96M95 TAS2R3-201ENST00000247879 1101 ntAPPRIS P1 BASIC3.34□□□□□ -1.87
CCDC42Q96M95 RNA5SP295-201ENST00000362655 121 ntBASIC3.34□□□□□ -1.87
CCDC42Q96M95 SNORA51.4-201ENST00000364993 124 ntBASIC3.34□□□□□ -1.87
CCDC42Q96M95 AC087276.2-201ENST00000394183 183 ntTSL 5 BASIC3.34□□□□□ -1.87
CCDC42Q96M95 AP000567.1-201ENST00000406413 156 ntBASIC3.34□□□□□ -1.87
CCDC42Q96M95 AL357500.1-201ENST00000413004 279 ntTSL 3 BASIC3.34□□□□□ -1.87
CCDC42Q96M95 AC004987.3-201ENST00000413879 771 ntBASIC3.34□□□□□ -1.87
CCDC42Q96M95 AC100848.1-201ENST00000417298 637 ntTSL 3 BASIC3.34□□□□□ -1.87
CCDC42Q96M95 AL031736.2-201ENST00000426573 787 ntBASIC3.34□□□□□ -1.87
CCDC42Q96M95 NRG3-AS1-201ENST00000448936 555 ntTSL 2 BASIC3.34□□□□□ -1.87
CCDC42Q96M95 BUD31P2-201ENST00000449374 300 ntBASIC3.34□□□□□ -1.87
CCDC42Q96M95 RPL37P6-202ENST00000464216 403 ntBASIC3.34□□□□□ -1.87
CCDC42Q96M95 AC080162.1-201ENST00000480764 491 ntTSL 3 BASIC3.34□□□□□ -1.87
CCDC42Q96M95 LINC02146-201ENST00000504244 509 ntTSL 3 BASIC3.34□□□□□ -1.87
CCDC42Q96M95 LINC02497-201ENST00000515292 507 ntTSL 3 BASIC3.34□□□□□ -1.87
CCDC42Q96M95 AC009597.1-201ENST00000521215 584 ntTSL 4 BASIC3.34□□□□□ -1.87
CCDC42Q96M95 AP000619.3-201ENST00000535634 1127 ntBASIC3.34□□□□□ -1.87
CCDC42Q96M95 AC106785.1-201ENST00000565935 262 ntBASIC3.34□□□□□ -1.87
CCDC42Q96M95 FAM60CP-201ENST00000591086 664 ntBASIC3.34□□□□□ -1.87
CCDC42Q96M95 PPP3CB-AS1-206ENST00000595935 675 ntTSL 5 BASIC3.34□□□□□ -1.87
CCDC42Q96M95 AL451074.6-201ENST00000608512 729 ntBASIC3.34□□□□□ -1.87
CCDC42Q96M95 AC004832.5-201ENST00000608677 401 ntBASIC3.34□□□□□ -1.87
CCDC42Q96M95 AC121761.2-201ENST00000617300 689 ntBASIC3.34□□□□□ -1.87
CCDC42Q96M95 METTL8-218ENST00000638989 876 ntTSL 5 BASIC3.34□□□□□ -1.87
CCDC42Q96M95 METTL8-219ENST00000640734 726 ntTSL 2 BASIC3.34□□□□□ -1.87
CCDC42Q96M95 DMD-201ENST00000288447 3856 ntTSL 1 (best) BASIC3.34□□□□□ -1.87
CCDC42Q96M95 AL355578.1-201ENST00000607405 1328 ntBASIC3.34□□□□□ -1.87
CCDC42Q96M95 ARPP19-211ENST00000568196 1489 ntTSL 2 BASIC3.34□□□□□ -1.88
CCDC42Q96M95 ZNF479-202ENST00000331162 2072 ntAPPRIS P1 TSL 1 (best) BASIC3.34□□□□□ -1.88
CCDC42Q96M95 AC007256.1-201ENST00000392253 2765 ntBASIC3.34□□□□□ -1.88
CCDC42Q96M95 CPXCR1-202ENST00000373111 1577 ntAPPRIS P1 TSL 2 BASIC3.34□□□□□ -1.88
CCDC42Q96M95 RICTOR-201ENST00000296782 7505 ntTSL 1 (best) BASIC3.33□□□□□ -1.88
CCDC42Q96M95 MT-ND5-201ENST00000361567 1812 ntAPPRIS P1 BASIC3.33□□□□□ -1.88
CCDC42Q96M95 P2RY13-201ENST00000325602 2764 ntAPPRIS P1 TSL 1 (best) BASIC3.33□□□□□ -1.88
CCDC42Q96M95 FILIP1L-206ENST00000471562 2854 ntTSL 1 (best) BASIC3.33□□□□□ -1.88
CCDC42Q96M95 MS4A5-201ENST00000300190 722 ntAPPRIS P1 TSL 1 (best) BASIC3.33□□□□□ -1.88
CCDC42Q96M95 OR6K3-202ENST00000368146 996 ntBASIC3.33□□□□□ -1.88
CCDC42Q96M95 RPL31P1-201ENST00000398116 372 ntBASIC3.33□□□□□ -1.88
CCDC42Q96M95 DEFB116-201ENST00000400549 309 ntAPPRIS P1 TSL 1 (best) BASIC3.33□□□□□ -1.88
CCDC42Q96M95 MTND2P16-201ENST00000419987 799 ntBASIC3.33□□□□□ -1.88
CCDC42Q96M95 TEX41-204ENST00000423031 491 ntTSL 4 BASIC3.33□□□□□ -1.88
CCDC42Q96M95 AC005019.1-201ENST00000436455 431 ntBASIC3.33□□□□□ -1.88
CCDC42Q96M95 ELOCP11-201ENST00000436690 332 ntBASIC3.33□□□□□ -1.88
CCDC42Q96M95 LINC01423-202ENST00000436845 423 ntTSL 2 BASIC3.33□□□□□ -1.88
CCDC42Q96M95 RPS27P5-201ENST00000444247 244 ntBASIC3.33□□□□□ -1.88
CCDC42Q96M95 ELOCP16-201ENST00000444494 332 ntBASIC3.33□□□□□ -1.88
CCDC42Q96M95 IQCG-204ENST00000453254 1230 ntTSL 2 BASIC3.33□□□□□ -1.88
CCDC42Q96M95 FO393415.3-201ENST00000456424 375 ntTSL 3 BASIC3.33□□□□□ -1.88
CCDC42Q96M95 AC006483.1-201ENST00000487308 313 ntBASIC3.33□□□□□ -1.88
CCDC42Q96M95 NREP-AS1-201ENST00000503242 411 ntTSL 3 BASIC3.33□□□□□ -1.88
CCDC42Q96M95 AC104304.1-201ENST00000505797 291 ntAPPRIS P1 TSL 3 BASIC3.33□□□□□ -1.88
CCDC42Q96M95 AC139718.1-201ENST00000508010 300 ntTSL 5 BASIC3.33□□□□□ -1.88
CCDC42Q96M95 RNU1-45P-201ENST00000517191 141 ntBASIC3.33□□□□□ -1.88
CCDC42Q96M95 CASP1-216ENST00000534497 825 ntTSL 5 BASIC3.33□□□□□ -1.88
CCDC42Q96M95 AC022367.1-202ENST00000535066 537 ntTSL 3 BASIC3.33□□□□□ -1.88
Retrieved 100 of 98,524 protein–RNA pairs in 117.6 ms