Protein–RNA interactions for Protein: Q8IXF0

NPAS3, Neuronal PAS domain-containing protein 3, humanhuman

Predictions only

Length 933 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPAS3Q8IXF0 FAM27E4-201ENST00000605259 342 ntBASIC6.3□□□□□ -1.4
NPAS3Q8IXF0 ATP5A1P2-202ENST00000616464 443 ntBASIC6.3□□□□□ -1.4
NPAS3Q8IXF0 uc_338.34-201ENST00000617467 174 ntBASIC6.3□□□□□ -1.4
NPAS3Q8IXF0 AC243585.2-201ENST00000619099 508 ntTSL 3 BASIC6.3□□□□□ -1.4
NPAS3Q8IXF0 AL365265.1-201ENST00000621045 234 ntBASIC6.3□□□□□ -1.4
NPAS3Q8IXF0 AC018445.2-201ENST00000622987 260 ntBASIC6.3□□□□□ -1.4
NPAS3Q8IXF0 LDHA-225ENST00000625635 141 ntTSL 5 BASIC6.3□□□□□ -1.4
NPAS3Q8IXF0 AC104461.1-201ENST00000637430 817 ntTSL 5 BASIC6.3□□□□□ -1.4
NPAS3Q8IXF0 LINC01043-201ENST00000565936 6897 ntTSL 1 (best) BASIC6.3□□□□□ -1.4
NPAS3Q8IXF0 GTF2H2B-203ENST00000508065 1432 ntBASIC6.3□□□□□ -1.4
NPAS3Q8IXF0 GTF3C3-202ENST00000409364 1736 ntTSL 1 (best) BASIC6.3□□□□□ -1.4
NPAS3Q8IXF0 NDUFS1-205ENST00000449699 2371 ntAPPRIS P1 TSL 2 BASIC6.3□□□□□ -1.4
NPAS3Q8IXF0 MARK2P4-201ENST00000503381 2380 ntBASIC6.3□□□□□ -1.4
NPAS3Q8IXF0 OR52N1-202ENST00000641645 2545 ntAPPRIS P1 BASIC6.3□□□□□ -1.4
NPAS3Q8IXF0 NUP210L-201ENST00000271854 5424 ntAPPRIS ALT2 TSL 5 BASIC6.3□□□□□ -1.4
NPAS3Q8IXF0 ZNF605-204ENST00000392321 6156 ntAPPRIS ALT2 TSL 2 BASIC6.3□□□□□ -1.4
NPAS3Q8IXF0 TLR7-201ENST00000380659 5011 ntAPPRIS P1 TSL 1 (best) BASIC6.3□□□□□ -1.4
NPAS3Q8IXF0 EFCAB3-202ENST00000450662 1694 ntTSL 5 BASIC6.3□□□□□ -1.4
NPAS3Q8IXF0 TMEM67-205ENST00000453321 4651 ntAPPRIS P1 TSL 1 (best) BASIC6.29□□□□□ -1.4
NPAS3Q8IXF0 TMEM8B-202ENST00000377991 14112 ntAPPRIS P1 TSL 1 (best) BASIC6.29□□□□□ -1.4
NPAS3Q8IXF0 ZNF112-202ENST00000354340 3654 ntAPPRIS P3 TSL 1 (best) BASIC6.29□□□□□ -1.4
NPAS3Q8IXF0 DPH5-203ENST00000370109 1316 ntAPPRIS P4 TSL 1 (best) BASIC6.29□□□□□ -1.4
NPAS3Q8IXF0 GNS-202ENST00000418919 4877 ntAPPRIS ALT2 TSL 1 (best) BASIC6.29□□□□□ -1.4
NPAS3Q8IXF0 FOXM1-202ENST00000359843 3315 ntAPPRIS P4 TSL 1 (best) BASIC6.29□□□□□ -1.4
NPAS3Q8IXF0 NAT1-209ENST00000541942 1948 ntAPPRIS P1 TSL 3 BASIC6.29□□□□□ -1.4
NPAS3Q8IXF0 CUL1-204ENST00000617797 2508 ntTSL 1 (best) BASIC6.29□□□□□ -1.4
NPAS3Q8IXF0 POM121L2-202ENST00000444565 3108 ntAPPRIS P2 BASIC6.29□□□□□ -1.4
NPAS3Q8IXF0 AC089998.1-201ENST00000548575 3141 ntBASIC6.29□□□□□ -1.4
NPAS3Q8IXF0 Y_RNA.54-201ENST00000362766 105 ntBASIC6.29□□□□□ -1.4
NPAS3Q8IXF0 RNA5SP375-201ENST00000362975 119 ntBASIC6.29□□□□□ -1.4
NPAS3Q8IXF0 SNORA62.1-201ENST00000364287 154 ntBASIC6.29□□□□□ -1.4
NPAS3Q8IXF0 RNU105B-201ENST00000364478 208 ntBASIC6.29□□□□□ -1.4
NPAS3Q8IXF0 RNU6-1154P-201ENST00000391001 104 ntBASIC6.29□□□□□ -1.4
NPAS3Q8IXF0 AL391361.1-201ENST00000405580 489 ntBASIC6.29□□□□□ -1.4
NPAS3Q8IXF0 AL591848.1-201ENST00000413092 322 ntBASIC6.29□□□□□ -1.4
NPAS3Q8IXF0 CYP4F30P-202ENST00000420048 405 ntBASIC6.29□□□□□ -1.4
NPAS3Q8IXF0 AL513188.1-201ENST00000421167 614 ntTSL 3 BASIC6.29□□□□□ -1.4
NPAS3Q8IXF0 USP9YP4-201ENST00000424401 1745 ntBASIC6.29□□□□□ -1.4
NPAS3Q8IXF0 LINC01870-201ENST00000427042 390 ntTSL 3 BASIC6.29□□□□□ -1.4
NPAS3Q8IXF0 RAET1E-AS1-201ENST00000446954 491 ntTSL 2 BASIC6.29□□□□□ -1.4
NPAS3Q8IXF0 Y_RNA.644-201ENST00000459006 113 ntBASIC6.29□□□□□ -1.4
NPAS3Q8IXF0 RNU7-180P-201ENST00000459240 63 ntBASIC6.29□□□□□ -1.4
NPAS3Q8IXF0 AC074198.2-201ENST00000508153 258 ntBASIC6.29□□□□□ -1.4
NPAS3Q8IXF0 KIF20A-205ENST00000508792 2935 ntTSL 2 BASIC6.29□□□□□ -1.4
NPAS3Q8IXF0 AC116337.1-201ENST00000509680 687 ntBASIC6.29□□□□□ -1.4
NPAS3Q8IXF0 SNORA25.11-201ENST00000515935 105 ntBASIC6.29□□□□□ -1.4
NPAS3Q8IXF0 SNORD27.1-201ENST00000516319 72 ntBASIC6.29□□□□□ -1.4
NPAS3Q8IXF0 Y_RNA.674-201ENST00000516362 113 ntBASIC6.29□□□□□ -1.4
NPAS3Q8IXF0 SNORA40.15-201ENST00000516884 107 ntBASIC6.29□□□□□ -1.4
NPAS3Q8IXF0 CYCSP22-201ENST00000517555 339 ntBASIC6.29□□□□□ -1.4
NPAS3Q8IXF0 ANKRD46-204ENST00000519597 2779 ntAPPRIS P1 TSL 1 (best) BASIC6.29□□□□□ -1.4
NPAS3Q8IXF0 AL049779.3-201ENST00000557141 606 ntBASIC6.29□□□□□ -1.4
NPAS3Q8IXF0 AC091078.2-201ENST00000557145 559 ntBASIC6.29□□□□□ -1.4
NPAS3Q8IXF0 AC018552.3-201ENST00000567416 561 ntBASIC6.29□□□□□ -1.4
NPAS3Q8IXF0 AC092132.1-201ENST00000570859 352 ntTSL 3 BASIC6.29□□□□□ -1.4
NPAS3Q8IXF0 AC006600.1-201ENST00000572529 153 ntBASIC6.29□□□□□ -1.4
NPAS3Q8IXF0 RNU4ATAC-201ENST00000580972 127 ntBASIC6.29□□□□□ -1.4
NPAS3Q8IXF0 KANTR-203ENST00000604062 4251 ntAPPRIS P1 TSL 5 BASIC6.29□□□□□ -1.4
NPAS3Q8IXF0 AC091193.1-201ENST00000604640 448 ntBASIC6.29□□□□□ -1.4
NPAS3Q8IXF0 RAC1P9-201ENST00000604990 392 ntBASIC6.29□□□□□ -1.4
NPAS3Q8IXF0 AL008729.2-201ENST00000606393 473 ntBASIC6.29□□□□□ -1.4
NPAS3Q8IXF0 IBTK-210ENST00000610980 5195 ntTSL 5 BASIC6.29□□□□□ -1.4
NPAS3Q8IXF0 CCDC129-211ENST00000615280 4142 ntAPPRIS ALT2 TSL 2 BASIC6.29□□□□□ -1.4
NPAS3Q8IXF0 LSAMP-207ENST00000539563 8821 ntTSL 3 BASIC6.29□□□□□ -1.4
NPAS3Q8IXF0 RXFP2-201ENST00000298386 3319 ntAPPRIS P3 TSL 1 (best) BASIC6.29□□□□□ -1.4
NPAS3Q8IXF0 TPMT-201ENST00000309983 3181 ntAPPRIS P1 TSL 1 (best) BASIC6.29□□□□□ -1.4
NPAS3Q8IXF0 C11orf65-208ENST00000615746 2711 ntAPPRIS P1 TSL 1 (best) BASIC6.29□□□□□ -1.4
NPAS3Q8IXF0 FOPNL-201ENST00000255759 2275 ntAPPRIS P1 TSL 1 (best) BASIC6.29□□□□□ -1.4
NPAS3Q8IXF0 IQCG-201ENST00000265239 2262 ntAPPRIS P1 TSL 1 (best) BASIC6.29□□□□□ -1.4
NPAS3Q8IXF0 PDE4D-228ENST00000636120 6659 ntTSL 5 BASIC6.29□□□□□ -1.4
NPAS3Q8IXF0 AC006213.6-201ENST00000623722 4179 ntBASIC6.29□□□□□ -1.4
NPAS3Q8IXF0 ZNF85-201ENST00000300540 1531 ntTSL 1 (best) BASIC6.29□□□□□ -1.4
NPAS3Q8IXF0 ANGPT2-201ENST00000325203 5416 ntAPPRIS P3 TSL 1 (best) BASIC6.29□□□□□ -1.4
NPAS3Q8IXF0 SLC16A6-201ENST00000327268 3807 ntAPPRIS P1 TSL 1 (best) BASIC6.29□□□□□ -1.4
NPAS3Q8IXF0 AC015971.1-203ENST00000426549 1948 ntTSL 1 (best) BASIC6.29□□□□□ -1.4
NPAS3Q8IXF0 AP001541.1-201ENST00000623322 1904 ntBASIC6.29□□□□□ -1.4
NPAS3Q8IXF0 THUMPD3P1-201ENST00000506556 1480 ntBASIC6.28□□□□□ -1.4
NPAS3Q8IXF0 AC022034.1-201ENST00000512867 2156 ntBASIC6.28□□□□□ -1.4
NPAS3Q8IXF0 RRN3-202ENST00000327307 2039 ntTSL 2 BASIC6.28□□□□□ -1.4
NPAS3Q8IXF0 TRAF5-201ENST00000261464 3972 ntAPPRIS P1 TSL 1 (best) BASIC6.28□□□□□ -1.4
NPAS3Q8IXF0 NCOR1-202ENST00000395848 3106 ntTSL 1 (best) BASIC6.28□□□□□ -1.4
NPAS3Q8IXF0 MSL2-202ENST00000434835 2272 ntTSL 2 BASIC6.28□□□□□ -1.4
NPAS3Q8IXF0 CTBS-202ENST00000370630 6600 ntAPPRIS P1 TSL 1 (best) BASIC6.28□□□□□ -1.4
NPAS3Q8IXF0 CARF-212ENST00000434998 1955 ntTSL 1 (best) BASIC6.28□□□□□ -1.4
NPAS3Q8IXF0 CEACAM1-203ENST00000352591 3170 ntTSL 1 (best) BASIC6.28□□□□□ -1.4
NPAS3Q8IXF0 ZNF658B-201ENST00000602828 3408 ntBASIC6.28□□□□□ -1.4
NPAS3Q8IXF0 MDM2-205ENST00000348801 798 ntTSL 1 (best) BASIC6.28□□□□□ -1.4
NPAS3Q8IXF0 AL121886.1-201ENST00000358609 435 ntBASIC6.28□□□□□ -1.4
NPAS3Q8IXF0 Y_RNA.200-201ENST00000364018 102 ntBASIC6.28□□□□□ -1.4
NPAS3Q8IXF0 RNA5SP500-201ENST00000364486 119 ntBASIC6.28□□□□□ -1.4
NPAS3Q8IXF0 RNU6-22P-201ENST00000384355 107 ntBASIC6.28□□□□□ -1.4
NPAS3Q8IXF0 SNORD20-201ENST00000384550 80 ntBASIC6.28□□□□□ -1.4
NPAS3Q8IXF0 MDM2-210ENST00000393413 657 ntTSL 1 (best) BASIC6.28□□□□□ -1.4
NPAS3Q8IXF0 HMGB3P7-201ENST00000400214 611 ntBASIC6.28□□□□□ -1.4
NPAS3Q8IXF0 RPS21P8-201ENST00000413365 247 ntBASIC6.28□□□□□ -1.4
NPAS3Q8IXF0 AL138787.1-202ENST00000437804 898 ntBASIC6.28□□□□□ -1.4
NPAS3Q8IXF0 MIR4435-2HG-209ENST00000441075 704 ntTSL 5 BASIC6.28□□□□□ -1.4
NPAS3Q8IXF0 IGKV1OR-3-201ENST00000446944 348 ntBASIC6.28□□□□□ -1.4
NPAS3Q8IXF0 AL157371.1-201ENST00000451910 394 ntTSL 3 BASIC6.28□□□□□ -1.4
NPAS3Q8IXF0 AC004801.2-202ENST00000463559 283 ntBASIC6.28□□□□□ -1.4
Retrieved 100 of 98,524 protein–RNA pairs in 99.9 ms