Protein–RNA interactions for Protein: Q8IX90

SKA3, Spindle and kinetochore-associated protein 3, humanhuman

Predictions only

Length 412 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3Q8IX90 CAPZA2-212ENST00000490693 809 ntTSL 2 BASIC3.35□□□□□ -1.87
SKA3Q8IX90 GYPA-204ENST00000504786 357 ntTSL 1 (best) BASIC3.35□□□□□ -1.87
SKA3Q8IX90 AC026784.1-201ENST00000507986 352 ntBASIC3.35□□□□□ -1.87
SKA3Q8IX90 AC002456.2-201ENST00000509356 380 ntBASIC3.35□□□□□ -1.87
SKA3Q8IX90 AC008780.2-201ENST00000509844 820 ntTSL 2 BASIC3.35□□□□□ -1.87
SKA3Q8IX90 AC005351.1-201ENST00000511152 786 ntBASIC3.35□□□□□ -1.87
SKA3Q8IX90 LINC02272-202ENST00000511399 607 ntTSL 2 BASIC3.35□□□□□ -1.87
SKA3Q8IX90 ARL2BPP6-201ENST00000512757 439 ntBASIC3.35□□□□□ -1.87
SKA3Q8IX90 AC079160.1-201ENST00000513489 739 ntTSL 1 (best) BASIC3.35□□□□□ -1.87
SKA3Q8IX90 LINC00491-204ENST00000513815 582 ntTSL 4 BASIC3.35□□□□□ -1.87
SKA3Q8IX90 VNN2-207ENST00000525289 900 ntTSL 1 (best) BASIC3.35□□□□□ -1.87
SKA3Q8IX90 AP002812.3-201ENST00000527012 551 ntTSL 5 BASIC3.35□□□□□ -1.87
SKA3Q8IX90 PTP4A1P6-201ENST00000531034 478 ntBASIC3.35□□□□□ -1.87
SKA3Q8IX90 AC027018.1-201ENST00000533978 396 ntTSL 4 BASIC3.35□□□□□ -1.87
SKA3Q8IX90 AC006518.2-201ENST00000542513 940 ntBASIC3.35□□□□□ -1.87
SKA3Q8IX90 CYCSP30-201ENST00000546447 172 ntBASIC3.35□□□□□ -1.87
SKA3Q8IX90 SRP54-AS1-203ENST00000556355 603 ntTSL 5 BASIC3.35□□□□□ -1.87
SKA3Q8IX90 AP005271.1-201ENST00000582470 412 ntTSL 3 BASIC3.35□□□□□ -1.87
SKA3Q8IX90 AC006557.3-201ENST00000592926 517 ntTSL 3 BASIC3.35□□□□□ -1.87
SKA3Q8IX90 AC063944.1-210ENST00000593837 519 ntTSL 5 BASIC3.35□□□□□ -1.87
SKA3Q8IX90 VN1R87P-201ENST00000596706 487 ntBASIC3.35□□□□□ -1.87
SKA3Q8IX90 LINC00347-205ENST00000597518 868 ntTSL 5 BASIC3.35□□□□□ -1.87
SKA3Q8IX90 AC097467.3-207ENST00000602249 725 ntTSL 5 BASIC3.35□□□□□ -1.87
SKA3Q8IX90 AC113194.1-201ENST00000606037 500 ntBASIC3.35□□□□□ -1.87
SKA3Q8IX90 AC112503.1-201ENST00000608436 391 ntBASIC3.35□□□□□ -1.87
SKA3Q8IX90 AC099676.1-201ENST00000608886 657 ntBASIC3.35□□□□□ -1.87
SKA3Q8IX90 AC243829.4-202ENST00000610845 410 ntTSL 5 BASIC3.35□□□□□ -1.87
SKA3Q8IX90 AL133445.2-201ENST00000611191 527 ntBASIC3.35□□□□□ -1.87
SKA3Q8IX90 AC024941.1-201ENST00000612250 334 ntBASIC3.35□□□□□ -1.87
SKA3Q8IX90 MIR6864-201ENST00000617935 70 ntBASIC3.35□□□□□ -1.87
SKA3Q8IX90 AC244472.1-201ENST00000620773 347 ntAPPRIS P1 BASIC3.35□□□□□ -1.87
SKA3Q8IX90 AC110491.2-201ENST00000624061 646 ntTSL 5 BASIC3.35□□□□□ -1.87
SKA3Q8IX90 AC010872.1-201ENST00000624225 675 ntBASIC3.35□□□□□ -1.87
SKA3Q8IX90 AC103798.2-201ENST00000624292 632 ntBASIC3.35□□□□□ -1.87
SKA3Q8IX90 CGA-204ENST00000627148 1010 ntAPPRIS P1 TSL 1 (best) BASIC3.35□□□□□ -1.87
SKA3Q8IX90 AL356118.1-201ENST00000635272 1078 ntBASIC3.35□□□□□ -1.87
SKA3Q8IX90 U6.98-201ENST00000637157 84 ntBASIC3.35□□□□□ -1.87
SKA3Q8IX90 MFN1-201ENST00000263969 2754 ntAPPRIS P1 TSL 1 (best) BASIC3.35□□□□□ -1.87
SKA3Q8IX90 RAD17-202ENST00000305138 3164 ntTSL 1 (best) BASIC3.35□□□□□ -1.87
SKA3Q8IX90 SAGE2P-201ENST00000420011 2126 ntBASIC3.35□□□□□ -1.87
SKA3Q8IX90 RTN4-209ENST00000405240 4061 ntTSL 1 (best) BASIC3.35□□□□□ -1.87
SKA3Q8IX90 NEB-218ENST00000603639 25578 ntAPPRIS ALT2 TSL 5 BASIC3.35□□□□□ -1.87
SKA3Q8IX90 NEB-219ENST00000604864 25578 ntAPPRIS ALT2 TSL 5 BASIC3.35□□□□□ -1.87
SKA3Q8IX90 OR6Y1-202ENST00000641282 3702 ntAPPRIS P1 BASIC3.35□□□□□ -1.87
SKA3Q8IX90 MTND4P8-201ENST00000514997 1362 ntBASIC3.35□□□□□ -1.87
SKA3Q8IX90 LRMP-221ENST00000636465 4540 ntAPPRIS ALT2 TSL 5 BASIC3.35□□□□□ -1.87
SKA3Q8IX90 FAP-214ENST00000627638 2569 ntAPPRIS ALT1 TSL 5 BASIC3.35□□□□□ -1.87
SKA3Q8IX90 CEP85L-202ENST00000368488 7118 ntTSL 5 BASIC3.35□□□□□ -1.87
SKA3Q8IX90 OTUD4P1-201ENST00000237841 3067 ntBASIC3.35□□□□□ -1.87
SKA3Q8IX90 ESCO1-201ENST00000269214 4523 ntAPPRIS P1 TSL 1 (best) BASIC3.34□□□□□ -1.87
SKA3Q8IX90 AGTR1-205ENST00000461609 1545 ntAPPRIS P1 TSL 3 BASIC3.34□□□□□ -1.87
SKA3Q8IX90 DOCK7-204ENST00000454575 6985 ntAPPRIS ALT2 TSL 1 (best) BASIC3.34□□□□□ -1.87
SKA3Q8IX90 C2orf78-201ENST00000409561 3045 ntAPPRIS P1 TSL 2 BASIC3.34□□□□□ -1.87
SKA3Q8IX90 TAF7L-201ENST00000324762 2107 ntAPPRIS ALT2 TSL 2 BASIC3.34□□□□□ -1.87
SKA3Q8IX90 IL21-201ENST00000264497 629 ntAPPRIS P3 TSL 1 (best) BASIC3.34□□□□□ -1.87
SKA3Q8IX90 HLFP1-201ENST00000402375 499 ntBASIC3.34□□□□□ -1.87
SKA3Q8IX90 AC069218.2-201ENST00000411665 344 ntBASIC3.34□□□□□ -1.87
SKA3Q8IX90 AC092155.1-202ENST00000416111 932 ntTSL 1 (best) BASIC3.34□□□□□ -1.87
SKA3Q8IX90 NUP35P2-201ENST00000416748 943 ntBASIC3.34□□□□□ -1.87
SKA3Q8IX90 PAICSP7-201ENST00000419829 962 ntBASIC3.34□□□□□ -1.87
SKA3Q8IX90 AL009174.1-201ENST00000426577 416 ntBASIC3.34□□□□□ -1.87
SKA3Q8IX90 RPL7P2-201ENST00000427639 268 ntBASIC3.34□□□□□ -1.87
SKA3Q8IX90 AC106053.1-201ENST00000431697 368 ntTSL 3 BASIC3.34□□□□□ -1.87
SKA3Q8IX90 TRBV26OR9-2-201ENST00000432077 293 ntBASIC3.34□□□□□ -1.87
SKA3Q8IX90 SNORA71B-202ENST00000439232 272 ntBASIC3.34□□□□□ -1.87
SKA3Q8IX90 ARF4P4-201ENST00000439608 520 ntBASIC3.34□□□□□ -1.87
SKA3Q8IX90 AL359378.1-201ENST00000439891 400 ntTSL 5 BASIC3.34□□□□□ -1.87
SKA3Q8IX90 NDUFAF4P2-201ENST00000445374 520 ntBASIC3.34□□□□□ -1.87
SKA3Q8IX90 RPL12P26-201ENST00000452430 487 ntBASIC3.34□□□□□ -1.87
SKA3Q8IX90 AC010890.1-201ENST00000454699 469 ntTSL 4 BASIC3.34□□□□□ -1.87
SKA3Q8IX90 TVP23BP2-201ENST00000455082 615 ntBASIC3.34□□□□□ -1.87
SKA3Q8IX90 DNAJC19P1-201ENST00000455312 319 ntBASIC3.34□□□□□ -1.87
SKA3Q8IX90 CFTRP1-201ENST00000456646 183 ntBASIC3.34□□□□□ -1.87
SKA3Q8IX90 AC084198.1-201ENST00000477747 402 ntBASIC3.34□□□□□ -1.87
SKA3Q8IX90 AL139099.1-201ENST00000497398 403 ntBASIC3.34□□□□□ -1.87
SKA3Q8IX90 AC026414.1-201ENST00000504046 698 ntBASIC3.34□□□□□ -1.87
SKA3Q8IX90 AC004069.2-201ENST00000505438 1114 ntBASIC3.34□□□□□ -1.87
SKA3Q8IX90 RAC1P2-201ENST00000511164 579 ntBASIC3.34□□□□□ -1.87
SKA3Q8IX90 SCARNA14-201ENST00000516903 136 ntBASIC3.34□□□□□ -1.87
SKA3Q8IX90 RN7SKP60-201ENST00000516985 239 ntBASIC3.34□□□□□ -1.87
SKA3Q8IX90 AC090150.2-201ENST00000521869 815 ntTSL 3 BASIC3.34□□□□□ -1.87
SKA3Q8IX90 AC103796.1-201ENST00000530663 358 ntTSL 1 (best) BASIC3.34□□□□□ -1.87
SKA3Q8IX90 TIMM9-206ENST00000555593 796 ntAPPRIS P1 TSL 1 (best) BASIC3.34□□□□□ -1.87
SKA3Q8IX90 MIR4425-201ENST00000580572 84 ntBASIC3.34□□□□□ -1.87
SKA3Q8IX90 AC008946.1-201ENST00000599756 421 ntTSL 3 BASIC3.34□□□□□ -1.87
SKA3Q8IX90 AL354760.1-201ENST00000608357 643 ntBASIC3.34□□□□□ -1.87
SKA3Q8IX90 PACRG-211ENST00000621363 360 ntTSL 5 BASIC3.34□□□□□ -1.87
SKA3Q8IX90 KBTBD2-208ENST00000621876 1196 ntTSL 5 BASIC3.34□□□□□ -1.87
SKA3Q8IX90 ALG6-201ENST00000263440 1895 ntAPPRIS ALT1 TSL 5 BASIC3.34□□□□□ -1.87
SKA3Q8IX90 RRAS2-202ENST00000414023 1884 ntTSL 2 BASIC3.34□□□□□ -1.87
SKA3Q8IX90 AC025263.3-201ENST00000622965 1396 ntBASIC3.34□□□□□ -1.88
SKA3Q8IX90 MGP-203ENST00000539261 1405 ntAPPRIS P1 TSL 1 (best) BASIC3.34□□□□□ -1.88
SKA3Q8IX90 CNTN6-201ENST00000350110 3814 ntAPPRIS P1 TSL 1 (best) BASIC3.34□□□□□ -1.88
SKA3Q8IX90 LRRN3-203ENST00000422987 3513 ntAPPRIS P1 TSL 1 (best) BASIC3.33□□□□□ -1.88
SKA3Q8IX90 CFHR3-201ENST00000367425 1645 ntAPPRIS P1 TSL 1 (best) BASIC3.33□□□□□ -1.88
SKA3Q8IX90 PALMD-205ENST00000615664 1844 ntTSL 5 BASIC3.33□□□□□ -1.88
SKA3Q8IX90 LTN1-207ENST00000614971 7756 ntTSL 1 (best) BASIC3.33□□□□□ -1.88
SKA3Q8IX90 ZNF826P-207ENST00000622273 1910 ntBASIC3.33□□□□□ -1.88
SKA3Q8IX90 LINC02393-202ENST00000614177 1993 ntTSL 2 BASIC3.33□□□□□ -1.88
SKA3Q8IX90 PSMA5-201ENST00000271308 3729 ntAPPRIS P1 TSL 1 (best) BASIC3.33□□□□□ -1.88
Retrieved 100 of 98,524 protein–RNA pairs in 98.7 ms