Protein–RNA interactions for Protein: Q53GS9

USP39, U4/U6.U5 tri-snRNP-associated protein 2, humanhuman

Known RBP Predictions only

Length 565 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP39Q53GS9 OR4K15-202ENST00000641512 1216 ntAPPRIS P1 BASIC5.04□□□□□ -1.6
USP39Q53GS9 AC245407.1-201ENST00000621489 2538 ntTSL 2 BASIC5.04□□□□□ -1.6
USP39Q53GS9 AC016705.1-201ENST00000548231 1891 ntTSL 5 BASIC5.04□□□□□ -1.6
USP39Q53GS9 ZNF415-201ENST00000243643 2270 ntAPPRIS P3 TSL 1 (best) BASIC5.04□□□□□ -1.6
USP39Q53GS9 OR8J2-201ENST00000641465 2883 ntAPPRIS P1 BASIC5.04□□□□□ -1.6
USP39Q53GS9 CXADR-205ENST00000400169 1445 ntAPPRIS ALT2 TSL 5 BASIC5.04□□□□□ -1.6
USP39Q53GS9 DDX18P3-201ENST00000404856 2007 ntBASIC5.04□□□□□ -1.6
USP39Q53GS9 AC006994.2-202ENST00000639259 3828 ntTSL 5 BASIC5.04□□□□□ -1.6
USP39Q53GS9 ZKSCAN8-201ENST00000330236 7376 ntAPPRIS P1 TSL 1 (best) BASIC5.04□□□□□ -1.6
USP39Q53GS9 AL034370.1-201ENST00000397254 1590 ntBASIC5.04□□□□□ -1.6
USP39Q53GS9 AC011447.7-201ENST00000624228 1590 ntBASIC5.04□□□□□ -1.6
USP39Q53GS9 SMG1P4-204ENST00000523028 4131 ntBASIC5.04□□□□□ -1.6
USP39Q53GS9 ATF7IP-209ENST00000536444 8774 ntAPPRIS ALT2 TSL 1 (best) BASIC5.03□□□□□ -1.6
USP39Q53GS9 FAM197Y9-201ENST00000451062 2332 ntTSL 5 BASIC5.03□□□□□ -1.6
USP39Q53GS9 SYT14-206ENST00000537238 5208 ntAPPRIS ALT2 TSL 5 BASIC5.03□□□□□ -1.6
USP39Q53GS9 CDKL3-210ENST00000523832 1501 ntAPPRIS ALT2 TSL 1 (best) BASIC5.03□□□□□ -1.6
USP39Q53GS9 MTRR-202ENST00000440940 3215 ntAPPRIS P1 TSL 1 (best) BASIC5.03□□□□□ -1.6
USP39Q53GS9 ZFAND6-223ENST00000616533 1653 ntAPPRIS P1 TSL 5 BASIC5.03□□□□□ -1.6
USP39Q53GS9 AL445623.2-201ENST00000640307 4805 ntTSL 1 (best) BASIC5.03□□□□□ -1.6
USP39Q53GS9 C3orf67-AS1-202ENST00000482372 2203 ntTSL 2 BASIC5.03□□□□□ -1.6
USP39Q53GS9 PPP1R9A-207ENST00000433881 9928 ntAPPRIS P1 TSL 5 BASIC5.03□□□□□ -1.6
USP39Q53GS9 RPL32P3-201ENST00000359025 275 ntBASIC5.03□□□□□ -1.6
USP39Q53GS9 RNA5SP191-201ENST00000362585 102 ntBASIC5.03□□□□□ -1.6
USP39Q53GS9 RNU6-1090P-201ENST00000364065 94 ntBASIC5.03□□□□□ -1.6
USP39Q53GS9 RNA5SP88-201ENST00000365560 109 ntBASIC5.03□□□□□ -1.6
USP39Q53GS9 MT-TP-201ENST00000387461 68 ntBASIC5.03□□□□□ -1.6
USP39Q53GS9 SNORA40.3-201ENST00000390964 122 ntBASIC5.03□□□□□ -1.6
USP39Q53GS9 RNU2-42P-201ENST00000410697 113 ntBASIC5.03□□□□□ -1.6
USP39Q53GS9 RN7SKP100-201ENST00000411258 284 ntBASIC5.03□□□□□ -1.6
USP39Q53GS9 AC068533.2-201ENST00000411872 306 ntBASIC5.03□□□□□ -1.6
USP39Q53GS9 RPS20P15-201ENST00000412792 311 ntBASIC5.03□□□□□ -1.6
USP39Q53GS9 RPL21P111-201ENST00000418453 477 ntBASIC5.03□□□□□ -1.6
USP39Q53GS9 GRM7-AS1-201ENST00000420230 430 ntTSL 3 BASIC5.03□□□□□ -1.6
USP39Q53GS9 AC069213.2-201ENST00000420238 366 ntBASIC5.03□□□□□ -1.6
USP39Q53GS9 AL161935.1-201ENST00000420945 421 ntTSL 3 BASIC5.03□□□□□ -1.6
USP39Q53GS9 AL592078.1-201ENST00000421866 321 ntTSL 3 BASIC5.03□□□□□ -1.6
USP39Q53GS9 AC007742.1-201ENST00000425789 329 ntBASIC5.03□□□□□ -1.6
USP39Q53GS9 HSPE1P16-201ENST00000426640 348 ntBASIC5.03□□□□□ -1.6
USP39Q53GS9 LINC01731-201ENST00000428035 420 ntTSL 3 BASIC5.03□□□□□ -1.6
USP39Q53GS9 AL359265.2-201ENST00000434367 631 ntBASIC5.03□□□□□ -1.6
USP39Q53GS9 AC018742.1-201ENST00000435237 488 ntTSL 3 BASIC5.03□□□□□ -1.6
USP39Q53GS9 MTCYBP45-201ENST00000435243 565 ntBASIC5.03□□□□□ -1.6
USP39Q53GS9 ELOCP26-201ENST00000436067 329 ntBASIC5.03□□□□□ -1.6
USP39Q53GS9 UBE2FP3-201ENST00000436366 524 ntBASIC5.03□□□□□ -1.6
USP39Q53GS9 MTND6P18-201ENST00000439477 513 ntBASIC5.03□□□□□ -1.6
USP39Q53GS9 LINC01474-202ENST00000449235 628 ntTSL 3 BASIC5.03□□□□□ -1.6
USP39Q53GS9 AC096554.1-201ENST00000458182 529 ntTSL 5 BASIC5.03□□□□□ -1.6
USP39Q53GS9 AC010326.1-201ENST00000462726 602 ntBASIC5.03□□□□□ -1.6
USP39Q53GS9 OR52A4P-201ENST00000472867 958 ntBASIC5.03□□□□□ -1.6
USP39Q53GS9 AC073522.1-201ENST00000483312 377 ntBASIC5.03□□□□□ -1.6
USP39Q53GS9 LARP1BP2-201ENST00000486594 519 ntBASIC5.03□□□□□ -1.6
USP39Q53GS9 IL7R-204ENST00000506850 1004 ntTSL 2 BASIC5.03□□□□□ -1.6
USP39Q53GS9 AC090193.1-201ENST00000518633 543 ntTSL 4 BASIC5.03□□□□□ -1.6
USP39Q53GS9 AL136501.1-201ENST00000555913 790 ntTSL 2 BASIC5.03□□□□□ -1.6
USP39Q53GS9 AC090607.4-201ENST00000558192 369 ntTSL 3 BASIC5.03□□□□□ -1.6
USP39Q53GS9 DISC1FP1-201ENST00000561596 545 ntTSL 5 BASIC5.03□□□□□ -1.6
USP39Q53GS9 AGBL1-AS1-203ENST00000566878 865 ntTSL 3 BASIC5.03□□□□□ -1.6
USP39Q53GS9 AC060780.3-201ENST00000589464 80 ntBASIC5.03□□□□□ -1.6
USP39Q53GS9 GMFG-202ENST00000594700 397 ntTSL 2 BASIC5.03□□□□□ -1.6
USP39Q53GS9 AC022432.1-201ENST00000595739 310 ntBASIC5.03□□□□□ -1.6
USP39Q53GS9 TEX41-238ENST00000604253 709 ntTSL 5 BASIC5.03□□□□□ -1.6
USP39Q53GS9 AL161729.4-201ENST00000604650 476 ntBASIC5.03□□□□□ -1.6
USP39Q53GS9 AC055876.5-201ENST00000605667 259 ntBASIC5.03□□□□□ -1.6
USP39Q53GS9 AC034238.1-215ENST00000609792 219 ntTSL 5 BASIC5.03□□□□□ -1.6
USP39Q53GS9 C7orf77-201ENST00000616258 548 ntAPPRIS P1 TSL 1 (best) BASIC5.03□□□□□ -1.6
USP39Q53GS9 MIR6863-201ENST00000636112 90 ntBASIC5.03□□□□□ -1.6
USP39Q53GS9 U6.107-201ENST00000637108 79 ntBASIC5.03□□□□□ -1.6
USP39Q53GS9 ABBA01000935.2-201ENST00000637477 838 ntBASIC5.03□□□□□ -1.6
USP39Q53GS9 AMY2B-201ENST00000361355 2181 ntAPPRIS P1 TSL 1 (best) BASIC5.03□□□□□ -1.6
USP39Q53GS9 HEMGN-202ENST00000616898 2305 ntAPPRIS P1 TSL 1 (best) BASIC5.03□□□□□ -1.6
USP39Q53GS9 EXTL2-201ENST00000370113 2835 ntAPPRIS P1 TSL 1 (best) BASIC5.03□□□□□ -1.6
USP39Q53GS9 AP000808.1-201ENST00000512200 3252 ntTSL 2 BASIC5.03□□□□□ -1.6
USP39Q53GS9 PTRH2-203ENST00000470557 4114 ntAPPRIS P3 BASIC5.03□□□□□ -1.6
USP39Q53GS9 GABRA1-220ENST00000638159 4088 ntTSL 5 BASIC5.02□□□□□ -1.61
USP39Q53GS9 C1orf141-208ENST00000621590 4179 ntAPPRIS ALT2 TSL 5 BASIC5.02□□□□□ -1.61
USP39Q53GS9 SPART-202ENST00000438666 4789 ntAPPRIS P1 TSL 1 (best) BASIC5.02□□□□□ -1.61
USP39Q53GS9 CCDC68-201ENST00000337363 1457 ntAPPRIS P1 TSL 2 BASIC5.02□□□□□ -1.61
USP39Q53GS9 Z99496.1-201ENST00000469424 1477 ntBASIC5.02□□□□□ -1.61
USP39Q53GS9 HEATR5A-203ENST00000543095 7840 ntAPPRIS P1 TSL 5 BASIC5.02□□□□□ -1.61
USP39Q53GS9 AL355306.2-205ENST00000635395 1646 ntTSL 5 BASIC5.02□□□□□ -1.61
USP39Q53GS9 GALNT13-202ENST00000409237 2591 ntTSL 1 (best) BASIC5.02□□□□□ -1.61
USP39Q53GS9 DNAJC9-AS1-204ENST00000440197 2865 ntTSL 1 (best) BASIC5.02□□□□□ -1.61
USP39Q53GS9 HMGB1P5-201ENST00000255320 642 ntBASIC5.02□□□□□ -1.61
USP39Q53GS9 STARD6-201ENST00000307844 663 ntAPPRIS P1 TSL 1 (best) BASIC5.02□□□□□ -1.61
USP39Q53GS9 RNU5D-1-201ENST00000363299 116 ntBASIC5.02□□□□□ -1.61
USP39Q53GS9 RNU5F-7P-201ENST00000363696 115 ntBASIC5.02□□□□□ -1.61
USP39Q53GS9 SNORA70.2-201ENST00000364506 135 ntBASIC5.02□□□□□ -1.61
USP39Q53GS9 RNU6-534P-201ENST00000364877 106 ntBASIC5.02□□□□□ -1.61
USP39Q53GS9 RNA5SP223-201ENST00000365174 120 ntBASIC5.02□□□□□ -1.61
USP39Q53GS9 Y_RNA.402-201ENST00000383972 102 ntBASIC5.02□□□□□ -1.61
USP39Q53GS9 MIR217-201ENST00000384817 110 ntBASIC5.02□□□□□ -1.61
USP39Q53GS9 TRAV23DV6-201ENST00000390451 409 ntAPPRIS P1 BASIC5.02□□□□□ -1.61
USP39Q53GS9 MTCO3P40-201ENST00000392516 676 ntBASIC5.02□□□□□ -1.61
USP39Q53GS9 AP000357.1-201ENST00000409926 1165 ntBASIC5.02□□□□□ -1.61
USP39Q53GS9 RNU6-77P-201ENST00000410554 91 ntBASIC5.02□□□□□ -1.61
USP39Q53GS9 AC069157.1-201ENST00000421749 137 ntBASIC5.02□□□□□ -1.61
USP39Q53GS9 AL136322.1-201ENST00000422250 548 ntTSL 4 BASIC5.02□□□□□ -1.61
USP39Q53GS9 FABP7P1-201ENST00000424004 391 ntBASIC5.02□□□□□ -1.61
USP39Q53GS9 RPL18P10-201ENST00000425606 538 ntBASIC5.02□□□□□ -1.61
USP39Q53GS9 AC087857.1-201ENST00000425894 467 ntTSL 3 BASIC5.02□□□□□ -1.61
Retrieved 100 of 98,524 protein–RNA pairs in 103.6 ms