Protein–RNA interactions for Protein: P98160

HSPG2, Basement membrane-specific heparan sulfate proteoglycan core protein, humanhuman

Predictions only

Length 4,391 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HSPG2P98160 NEGR1-IT1-201ENST00000453121 534 ntTSL 1 (best) BASIC1.81□□□□□ -2.12
HSPG2P98160 RPS4XP22-201ENST00000480755 780 ntBASIC1.81□□□□□ -2.12
HSPG2P98160 MIR4738-201ENST00000579134 87 ntBASIC1.81□□□□□ -2.12
HSPG2P98160 PIK3C2G-206ENST00000538779 4963 ntTSL 5 BASIC1.81□□□□□ -2.12
HSPG2P98160 CASP10-202ENST00000286186 5928 ntAPPRIS P4 TSL 1 (best) BASIC1.81□□□□□ -2.12
HSPG2P98160 ZBED6-201ENST00000545588 7979 ntTSL 1 (best) BASIC1.81□□□□□ -2.12
HSPG2P98160 AC027290.2-201ENST00000623210 18662 ntBASIC1.81□□□□□ -2.12
HSPG2P98160 MTND5P24-201ENST00000438892 1767 ntBASIC1.81□□□□□ -2.12
HSPG2P98160 PLCB1-211ENST00000617005 6458 ntTSL 5 BASIC1.81□□□□□ -2.12
HSPG2P98160 ADGRL2-205ENST00000370717 5873 ntAPPRIS ALT2 TSL 5 BASIC1.81□□□□□ -2.12
HSPG2P98160 UBA6-201ENST00000322244 9564 ntAPPRIS P1 TSL 1 (best) BASIC1.81□□□□□ -2.12
HSPG2P98160 LRMP-221ENST00000636465 4540 ntAPPRIS ALT2 TSL 5 BASIC1.81□□□□□ -2.12
HSPG2P98160 CTNNA3-203ENST00000433211 10675 ntAPPRIS P1 TSL 1 (best) BASIC1.81□□□□□ -2.12
HSPG2P98160 OR1S2-201ENST00000302592 978 ntBASIC1.81□□□□□ -2.12
HSPG2P98160 AC010307.1-201ENST00000467206 836 ntBASIC1.81□□□□□ -2.12
HSPG2P98160 MIR1273D-201ENST00000577266 86 ntBASIC1.81□□□□□ -2.12
HSPG2P98160 AC015871.2-201ENST00000603605 948 ntBASIC1.81□□□□□ -2.12
HSPG2P98160 AL358154.1-201ENST00000627075 444 ntTSL 3 BASIC1.81□□□□□ -2.12
HSPG2P98160 BMPR2-201ENST00000374574 9683 ntTSL 2 BASIC1.81□□□□□ -2.12
HSPG2P98160 AC005005.4-201ENST00000623789 16698 ntBASIC1.81□□□□□ -2.12
HSPG2P98160 GALNT13-202ENST00000409237 2591 ntTSL 1 (best) BASIC1.81□□□□□ -2.12
HSPG2P98160 MTND4P26-201ENST00000415971 1359 ntBASIC1.81□□□□□ -2.12
HSPG2P98160 CEP170-202ENST00000366542 6828 ntAPPRIS P1 TSL 5 BASIC1.8□□□□□ -2.12
HSPG2P98160 CYLC2-201ENST00000374798 2171 ntAPPRIS P1 TSL 1 (best) BASIC1.8□□□□□ -2.12
HSPG2P98160 AL162400.2-201ENST00000427547 157 ntTSL 3 BASIC1.8□□□□□ -2.12
HSPG2P98160 MRPS31P2-201ENST00000451581 518 ntBASIC1.8□□□□□ -2.12
HSPG2P98160 AC090525.1-201ENST00000479116 478 ntBASIC1.8□□□□□ -2.12
HSPG2P98160 RGS4-207ENST00000527809 817 ntTSL 4 BASIC1.8□□□□□ -2.12
HSPG2P98160 AC009803.2-201ENST00000550378 665 ntTSL 5 BASIC1.8□□□□□ -2.12
HSPG2P98160 AC006272.2-201ENST00000594725 163 ntBASIC1.8□□□□□ -2.12
HSPG2P98160 AC244472.2-201ENST00000617639 406 ntAPPRIS P1 BASIC1.8□□□□□ -2.12
HSPG2P98160 AL669942.2-201ENST00000620352 697 ntBASIC1.8□□□□□ -2.12
HSPG2P98160 AC096644.4-201ENST00000563417 2912 ntBASIC1.8□□□□□ -2.12
HSPG2P98160 SLC41A2-201ENST00000258538 4449 ntAPPRIS P1 TSL 1 (best) BASIC1.8□□□□□ -2.12
HSPG2P98160 MUC2-202ENST00000613187 4845 ntBASIC1.8□□□□□ -2.12
HSPG2P98160 AFF2-201ENST00000286437 12280 ntTSL 2 BASIC1.8□□□□□ -2.12
HSPG2P98160 UGT8-202ENST00000394511 2448 ntAPPRIS P1 TSL 1 (best) BASIC1.8□□□□□ -2.12
HSPG2P98160 ABCA12-202ENST00000389661 7005 ntTSL 1 (best) BASIC1.8□□□□□ -2.12
HSPG2P98160 CCDC146-201ENST00000285871 3333 ntAPPRIS P2 TSL 1 (best) BASIC1.8□□□□□ -2.12
HSPG2P98160 RPL21P132-201ENST00000331267 462 ntBASIC1.8□□□□□ -2.12
HSPG2P98160 Y_RNA.164-201ENST00000363709 102 ntBASIC1.8□□□□□ -2.12
HSPG2P98160 AL121834.1-202ENST00000404494 277 ntBASIC1.8□□□□□ -2.12
HSPG2P98160 PAIP2-205ENST00000510080 858 ntAPPRIS P1 TSL 1 (best) BASIC1.8□□□□□ -2.12
HSPG2P98160 AC016866.2-201ENST00000585251 502 ntTSL 2 BASIC1.8□□□□□ -2.12
HSPG2P98160 AC063952.1-203ENST00000634410 658 ntBASIC1.8□□□□□ -2.12
HSPG2P98160 STAG2-204ENST00000371157 5991 ntAPPRIS P3 TSL 1 (best) BASIC1.8□□□□□ -2.12
HSPG2P98160 BCLAF1-202ENST00000392348 2610 ntTSL 5 BASIC1.8□□□□□ -2.12
HSPG2P98160 CNTN5-201ENST00000279463 5925 ntTSL 5 BASIC1.8□□□□□ -2.12
HSPG2P98160 ARHGEF12-202ENST00000397843 9660 ntAPPRIS P1 TSL 1 (best) BASIC1.8□□□□□ -2.12
HSPG2P98160 ACADM-203ENST00000420607 1332 ntAPPRIS ALT1 TSL 1 (best) BASIC1.8□□□□□ -2.12
HSPG2P98160 KRR1-201ENST00000229214 10118 ntAPPRIS P1 TSL 1 (best) BASIC1.8□□□□□ -2.12
HSPG2P98160 TUG1-201ENST00000519077 5673 ntTSL 1 (best) BASIC1.8□□□□□ -2.12
HSPG2P98160 ATL2-202ENST00000402054 1883 ntTSL 5 BASIC1.8□□□□□ -2.12
HSPG2P98160 ZNF72P-201ENST00000425869 1908 ntBASIC1.8□□□□□ -2.12
HSPG2P98160 GABPB1-AS1-202ENST00000499624 16182 ntTSL 1 (best) BASIC1.8□□□□□ -2.12
HSPG2P98160 KPNA2P2-201ENST00000419546 1489 ntBASIC1.8□□□□□ -2.12
HSPG2P98160 Y_RNA.796-201ENST00000364268 102 ntBASIC1.8□□□□□ -2.12
HSPG2P98160 Y_RNA.799-201ENST00000364992 102 ntBASIC1.8□□□□□ -2.12
HSPG2P98160 USP12PY-201ENST00000427677 1064 ntBASIC1.8□□□□□ -2.12
HSPG2P98160 UQCRHP3-201ENST00000451503 251 ntBASIC1.8□□□□□ -2.12
HSPG2P98160 PRDX3P4-201ENST00000470828 747 ntBASIC1.8□□□□□ -2.12
HSPG2P98160 AP001025.2-201ENST00000490908 477 ntBASIC1.8□□□□□ -2.12
HSPG2P98160 AC090833.1-202ENST00000511073 781 ntTSL 3 BASIC1.8□□□□□ -2.12
HSPG2P98160 AC107934.2-201ENST00000518653 310 ntBASIC1.8□□□□□ -2.12
HSPG2P98160 AL355922.5-201ENST00000553534 351 ntTSL 3 BASIC1.8□□□□□ -2.12
HSPG2P98160 OR11H5P-201ENST00000554039 926 ntBASIC1.8□□□□□ -2.12
HSPG2P98160 AL354821.1-201ENST00000617598 809 ntTSL 3 BASIC1.8□□□□□ -2.12
HSPG2P98160 CRISP1-202ENST00000335847 1911 ntAPPRIS P1 TSL 1 (best) BASIC1.8□□□□□ -2.12
HSPG2P98160 KNL1-204ENST00000527044 5404 ntTSL 5 BASIC1.8□□□□□ -2.12
HSPG2P98160 SCFD1-207ENST00000544052 2058 ntTSL 2 BASIC1.8□□□□□ -2.12
HSPG2P98160 SCEL-201ENST00000349847 2386 ntAPPRIS P4 TSL 1 (best) BASIC1.8□□□□□ -2.12
HSPG2P98160 RPL7P26-201ENST00000333817 754 ntBASIC1.8□□□□□ -2.12
HSPG2P98160 UTS2-202ENST00000361696 559 ntAPPRIS ALT2 TSL 1 (best) BASIC1.8□□□□□ -2.12
HSPG2P98160 FAM107B-204ENST00000378465 1052 ntAPPRIS P1 TSL 2 BASIC1.8□□□□□ -2.12
HSPG2P98160 DEFB127-201ENST00000382388 514 ntAPPRIS P1 TSL 1 (best) BASIC1.8□□□□□ -2.12
HSPG2P98160 RNU6-76P-201ENST00000384060 104 ntBASIC1.8□□□□□ -2.12
HSPG2P98160 Y_RNA.540-201ENST00000384638 111 ntBASIC1.8□□□□□ -2.12
HSPG2P98160 HSPE1P8-201ENST00000406997 288 ntBASIC1.8□□□□□ -2.12
HSPG2P98160 U3.42-201ENST00000408746 214 ntBASIC1.8□□□□□ -2.12
HSPG2P98160 Z98742.3-201ENST00000418637 326 ntBASIC1.8□□□□□ -2.12
HSPG2P98160 RAB6C-AS1-202ENST00000433431 123 ntBASIC1.8□□□□□ -2.12
HSPG2P98160 LINC01216-201ENST00000515728 824 ntTSL 5 BASIC1.8□□□□□ -2.12
HSPG2P98160 MYL12AP1-201ENST00000518490 515 ntBASIC1.8□□□□□ -2.12
HSPG2P98160 AP003718.1-201ENST00000529884 583 ntTSL 4 BASIC1.8□□□□□ -2.12
HSPG2P98160 AC090409.2-202ENST00000585706 604 ntTSL 5 BASIC1.8□□□□□ -2.12
HSPG2P98160 RMST_8.1-201ENST00000610287 165 ntBASIC1.8□□□□□ -2.12
HSPG2P98160 AL596275.2-204ENST00000641628 552 ntBASIC1.8□□□□□ -2.12
HSPG2P98160 AL596275.2-206ENST00000641957 626 ntBASIC1.8□□□□□ -2.12
HSPG2P98160 VNN2-206ENST00000525270 1608 ntAPPRIS ALT2 TSL 2 BASIC1.79□□□□□ -2.12
HSPG2P98160 CENPE-201ENST00000265148 8612 ntAPPRIS P1 TSL 2 BASIC1.79□□□□□ -2.12
HSPG2P98160 AC087190.4-201ENST00000574616 8334 ntBASIC1.79□□□□□ -2.12
HSPG2P98160 PHF6-205ENST00000625464 4434 ntAPPRIS ALT1 TSL 5 BASIC1.79□□□□□ -2.12
HSPG2P98160 POSTN-209ENST00000541179 3214 ntAPPRIS ALT2 TSL 1 (best) BASIC1.79□□□□□ -2.12
HSPG2P98160 ADGRL2-203ENST00000370713 5382 ntTSL 1 (best) BASIC1.79□□□□□ -2.12
HSPG2P98160 AC034195.1-202ENST00000451031 610 ntTSL 3 BASIC1.79□□□□□ -2.12
HSPG2P98160 AP003102.1-201ENST00000525638 661 ntBASIC1.79□□□□□ -2.12
HSPG2P98160 CPSF6-207ENST00000551516 234 ntTSL 2 BASIC1.79□□□□□ -2.12
HSPG2P98160 AC009396.3-201ENST00000555680 354 ntTSL 5 BASIC1.79□□□□□ -2.12
HSPG2P98160 AC011524.2-201ENST00000589198 399 ntTSL 3 BASIC1.79□□□□□ -2.12
HSPG2P98160 AL158062.1-201ENST00000619632 745 ntBASIC1.79□□□□□ -2.12
Retrieved 100 of 98,524 protein–RNA pairs in 98.6 ms