Protein–RNA interactions for Protein: P78317

RNF4, E3 ubiquitin-protein ligase RNF4, humanhuman

Predictions only

Length 190 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4P78317 LINC02379-201ENST00000505741 300 ntTSL 3 BASIC5.3□□□□□ -1.56
RNF4P78317 AC087241.1-201ENST00000508615 429 ntTSL 5 BASIC5.3□□□□□ -1.56
RNF4P78317 RNU4-49P-201ENST00000516080 140 ntBASIC5.3□□□□□ -1.56
RNF4P78317 AC079209.2-201ENST00000519107 431 ntTSL 3 BASIC5.3□□□□□ -1.56
RNF4P78317 MRPS16P1-201ENST00000523462 412 ntBASIC5.3□□□□□ -1.56
RNF4P78317 MYL6-213ENST00000549017 502 ntTSL 3 BASIC5.3□□□□□ -1.56
RNF4P78317 LINC02464-201ENST00000552060 368 ntTSL 2 BASIC5.3□□□□□ -1.56
RNF4P78317 AC078814.2-201ENST00000552996 535 ntTSL 4 BASIC5.3□□□□□ -1.56
RNF4P78317 SMARCE1P3-201ENST00000553649 1231 ntBASIC5.3□□□□□ -1.56
RNF4P78317 AC091231.1-201ENST00000558443 391 ntTSL 5 BASIC5.3□□□□□ -1.56
RNF4P78317 AC090615.1-201ENST00000577519 154 ntBASIC5.3□□□□□ -1.56
RNF4P78317 AC129492.2-201ENST00000577807 517 ntTSL 3 BASIC5.3□□□□□ -1.56
RNF4P78317 MIR4742-201ENST00000581069 85 ntBASIC5.3□□□□□ -1.56
RNF4P78317 AC012588.1-201ENST00000583852 358 ntTSL 3 BASIC5.3□□□□□ -1.56
RNF4P78317 AP001029.3-201ENST00000588063 596 ntBASIC5.3□□□□□ -1.56
RNF4P78317 AC011518.1-202ENST00000592668 407 ntTSL 5 BASIC5.3□□□□□ -1.56
RNF4P78317 Z98949.1-202ENST00000600211 1282 ntTSL 5 BASIC5.3□□□□□ -1.56
RNF4P78317 AL360085.1-201ENST00000604713 532 ntBASIC5.3□□□□□ -1.56
RNF4P78317 RN7SL787P-201ENST00000613000 284 ntBASIC5.3□□□□□ -1.56
RNF4P78317 AL391425.1-202ENST00000617518 774 ntTSL 5 BASIC5.3□□□□□ -1.56
RNF4P78317 AC068831.8-201ENST00000620171 435 ntBASIC5.3□□□□□ -1.56
RNF4P78317 AC074140.1-201ENST00000621617 208 ntBASIC5.3□□□□□ -1.56
RNF4P78317 C1orf195-202ENST00000625027 441 ntTSL 5 BASIC5.3□□□□□ -1.56
RNF4P78317 AC083843.2-201ENST00000568248 6253 ntBASIC5.3□□□□□ -1.56
RNF4P78317 BRIP1-202ENST00000577598 3969 ntAPPRIS ALT2 TSL 5 BASIC5.3□□□□□ -1.56
RNF4P78317 CALCOCO2-204ENST00000448105 1916 ntTSL 2 BASIC5.3□□□□□ -1.56
RNF4P78317 CASP1-210ENST00000528974 1402 ntTSL 2 BASIC5.3□□□□□ -1.56
RNF4P78317 PLEKHS1-205ENST00000369312 3443 ntTSL 2 BASIC5.29□□□□□ -1.56
RNF4P78317 AC093591.2-201ENST00000565254 3843 ntBASIC5.29□□□□□ -1.56
RNF4P78317 LRRC49-201ENST00000260382 2784 ntAPPRIS P3 TSL 1 (best) BASIC5.29□□□□□ -1.56
RNF4P78317 AC011933.2-201ENST00000578539 2790 ntBASIC5.29□□□□□ -1.56
RNF4P78317 AIG1-208ENST00000494282 3393 ntTSL 1 (best) BASIC5.29□□□□□ -1.56
RNF4P78317 ASNSP3-201ENST00000451989 1306 ntBASIC5.29□□□□□ -1.56
RNF4P78317 GPR34-202ENST00000378142 1928 ntAPPRIS P1 TSL 1 (best) BASIC5.29□□□□□ -1.56
RNF4P78317 FGF1-202ENST00000359370 3660 ntAPPRIS P1 TSL 1 (best) BASIC5.29□□□□□ -1.56
RNF4P78317 NBPF19-201ENST00000369227 3670 ntTSL 5 BASIC5.29□□□□□ -1.56
RNF4P78317 RNF32-203ENST00000392741 2260 ntTSL 1 (best) BASIC5.29□□□□□ -1.56
RNF4P78317 XKR3-201ENST00000331428 1690 ntAPPRIS P1 TSL 1 (best) BASIC5.29□□□□□ -1.56
RNF4P78317 RNA5SP258-201ENST00000362750 119 ntBASIC5.29□□□□□ -1.56
RNF4P78317 RNU5E-8P-201ENST00000363502 116 ntBASIC5.29□□□□□ -1.56
RNF4P78317 SNORD82-201ENST00000365530 70 ntBASIC5.29□□□□□ -1.56
RNF4P78317 Y_RNA.367-201ENST00000365544 101 ntBASIC5.29□□□□□ -1.56
RNF4P78317 Y_RNA.431-201ENST00000384086 102 ntBASIC5.29□□□□□ -1.56
RNF4P78317 MIR130A-201ENST00000385274 89 ntBASIC5.29□□□□□ -1.56
RNF4P78317 RNA5SP91-201ENST00000390902 119 ntBASIC5.29□□□□□ -1.56
RNF4P78317 RNU6-510P-201ENST00000391239 108 ntBASIC5.29□□□□□ -1.56
RNF4P78317 RN7SKP286-201ENST00000410894 299 ntBASIC5.29□□□□□ -1.56
RNF4P78317 EEF1A1P29-201ENST00000416082 1096 ntBASIC5.29□□□□□ -1.56
RNF4P78317 LINC00368-201ENST00000422994 650 ntTSL 1 (best) BASIC5.29□□□□□ -1.56
RNF4P78317 AL157786.1-206ENST00000424422 551 ntTSL 3 BASIC5.29□□□□□ -1.56
RNF4P78317 AL353729.1-201ENST00000425044 720 ntBASIC5.29□□□□□ -1.56
RNF4P78317 DUTP6-201ENST00000425573 462 ntBASIC5.29□□□□□ -1.56
RNF4P78317 OR4K11P-201ENST00000431829 904 ntBASIC5.29□□□□□ -1.56
RNF4P78317 IFNA20P-201ENST00000436840 528 ntBASIC5.29□□□□□ -1.56
RNF4P78317 TTTY22-201ENST00000445253 427 ntTSL 1 (best) BASIC5.29□□□□□ -1.56
RNF4P78317 AC114877.1-201ENST00000446601 582 ntTSL 4 BASIC5.29□□□□□ -1.56
RNF4P78317 YWHAEP1-201ENST00000453697 763 ntBASIC5.29□□□□□ -1.56
RNF4P78317 AL356010.1-201ENST00000456364 102 ntBASIC5.29□□□□□ -1.56
RNF4P78317 snoU13.29-201ENST00000459370 104 ntBASIC5.29□□□□□ -1.56
RNF4P78317 AP001992.1-205ENST00000462248 379 ntBASIC5.29□□□□□ -1.56
RNF4P78317 AC021382.1-201ENST00000483523 359 ntBASIC5.29□□□□□ -1.56
RNF4P78317 CLEC19A-204ENST00000493231 557 ntTSL 3 BASIC5.29□□□□□ -1.56
RNF4P78317 DUTP1-201ENST00000493631 470 ntBASIC5.29□□□□□ -1.56
RNF4P78317 AC020893.1-201ENST00000502452 580 ntBASIC5.29□□□□□ -1.56
RNF4P78317 FTH1P24-201ENST00000503502 462 ntBASIC5.29□□□□□ -1.56
RNF4P78317 HSPD1P15-201ENST00000505573 1122 ntBASIC5.29□□□□□ -1.56
RNF4P78317 AC008592.2-201ENST00000506070 571 ntTSL 3 BASIC5.29□□□□□ -1.56
RNF4P78317 LINC02432-203ENST00000511213 719 ntTSL 2 BASIC5.29□□□□□ -1.56
RNF4P78317 AC093853.1-201ENST00000515689 483 ntBASIC5.29□□□□□ -1.56
RNF4P78317 SNORA19.2-201ENST00000516013 114 ntBASIC5.29□□□□□ -1.56
RNF4P78317 ALKBH3-AS1-202ENST00000527960 547 ntTSL 4 BASIC5.29□□□□□ -1.56
RNF4P78317 DCN-210ENST00000547568 823 ntTSL 3 BASIC5.29□□□□□ -1.56
RNF4P78317 AC068831.4-201ENST00000556118 109 ntBASIC5.29□□□□□ -1.56
RNF4P78317 AC004943.1-202ENST00000558618 503 ntTSL 3 BASIC5.29□□□□□ -1.56
RNF4P78317 OR4K8P-201ENST00000578842 1048 ntBASIC5.29□□□□□ -1.56
RNF4P78317 CCDC178-211ENST00000581852 876 ntAPPRIS ALT2 TSL 2 BASIC5.29□□□□□ -1.56
RNF4P78317 AC005856.1-201ENST00000585921 286 ntTSL 3 BASIC5.29□□□□□ -1.56
RNF4P78317 GLUD1P4-201ENST00000590914 418 ntBASIC5.29□□□□□ -1.56
RNF4P78317 NANOGP3-201ENST00000605855 286 ntBASIC5.29□□□□□ -1.56
RNF4P78317 AL603758.1-201ENST00000618654 241 ntBASIC5.29□□□□□ -1.56
RNF4P78317 AL513314.2-201ENST00000621440 545 ntTSL 5 BASIC5.29□□□□□ -1.56
RNF4P78317 CU634019.2-201ENST00000625184 593 ntTSL 3 BASIC5.29□□□□□ -1.56
RNF4P78317 CTSLP2-203ENST00000628708 493 ntTSL 5 BASIC5.29□□□□□ -1.56
RNF4P78317 AC011460.1-201ENST00000636268 1834 ntBASIC5.29□□□□□ -1.56
RNF4P78317 PCAT14-202ENST00000627127 3935 ntBASIC5.29□□□□□ -1.56
RNF4P78317 AL513550.1-201ENST00000418945 1638 ntTSL 2 BASIC5.29□□□□□ -1.56
RNF4P78317 CPED1-203ENST00000423795 2189 ntTSL 1 (best) BASIC5.29□□□□□ -1.56
RNF4P78317 SLC4A10-202ENST00000375514 5710 ntAPPRIS ALT1 TSL 2 BASIC5.29□□□□□ -1.56
RNF4P78317 IQCH-202ENST00000358767 3062 ntTSL 5 BASIC5.29□□□□□ -1.56
RNF4P78317 SGMS2-201ENST00000359079 1887 ntAPPRIS P1 TSL 1 (best) BASIC5.28□□□□□ -1.56
RNF4P78317 SRRM1P3-201ENST00000426911 2678 ntBASIC5.28□□□□□ -1.56
RNF4P78317 SPINK5-202ENST00000359874 3656 ntAPPRIS ALT2 TSL 1 (best) BASIC5.28□□□□□ -1.56
RNF4P78317 ZNF493-203ENST00000392288 5023 ntAPPRIS P1 TSL 1 (best) BASIC5.28□□□□□ -1.56
RNF4P78317 OR1S2-201ENST00000302592 978 ntBASIC5.28□□□□□ -1.56
RNF4P78317 RNU6-1243P-201ENST00000364028 107 ntBASIC5.28□□□□□ -1.56
RNF4P78317 RN7SKP69-201ENST00000365390 305 ntBASIC5.28□□□□□ -1.56
RNF4P78317 RNY3P13-201ENST00000365542 102 ntBASIC5.28□□□□□ -1.56
RNF4P78317 AL390198.1-201ENST00000376445 320 ntTSL 2 BASIC5.28□□□□□ -1.56
RNF4P78317 RPL11P3-201ENST00000395256 523 ntBASIC5.28□□□□□ -1.56
RNF4P78317 AL354766.1-201ENST00000423396 542 ntBASIC5.28□□□□□ -1.56
Retrieved 100 of 98,524 protein–RNA pairs in 10.1 ms