Protein–RNA interactions for Protein: P35548

MSX2, Homeobox protein MSX-2, humanhuman

Predicted RBP Predictions only

Length 267 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX2P35548 NAMPT-202ENST00000354289 1213 ntTSL 1 (best) BASIC4.85□□□□□ -1.63
MSX2P35548 MIR133B-201ENST00000362210 119 ntBASIC4.85□□□□□ -1.63
MSX2P35548 SNORA51.1-201ENST00000363243 140 ntBASIC4.85□□□□□ -1.63
MSX2P35548 RNU6-1085P-201ENST00000363576 107 ntBASIC4.85□□□□□ -1.63
MSX2P35548 RNA5SP90-201ENST00000364801 99 ntBASIC4.85□□□□□ -1.63
MSX2P35548 AL158212.2-201ENST00000369391 460 ntTSL 3 BASIC4.85□□□□□ -1.63
MSX2P35548 RNU6-178P-201ENST00000384631 104 ntBASIC4.85□□□□□ -1.63
MSX2P35548 CEACAM7-202ENST00000401731 1236 ntAPPRIS P1 TSL 2 BASIC4.85□□□□□ -1.63
MSX2P35548 TANK-203ENST00000402568 878 ntTSL 5 BASIC4.85□□□□□ -1.63
MSX2P35548 TOMM7-203ENST00000405021 455 ntTSL 2 BASIC4.85□□□□□ -1.63
MSX2P35548 RN7SKP206-201ENST00000410823 293 ntBASIC4.85□□□□□ -1.63
MSX2P35548 OR6E1P-201ENST00000414424 923 ntBASIC4.85□□□□□ -1.63
MSX2P35548 AL078581.1-201ENST00000419134 340 ntTSL 5 BASIC4.85□□□□□ -1.63
MSX2P35548 PIGFP2-201ENST00000421400 651 ntBASIC4.85□□□□□ -1.63
MSX2P35548 AL159174.1-202ENST00000425588 442 ntTSL 3 BASIC4.85□□□□□ -1.63
MSX2P35548 AL451042.1-201ENST00000426353 544 ntTSL 3 BASIC4.85□□□□□ -1.63
MSX2P35548 AC008850.1-201ENST00000427546 362 ntBASIC4.85□□□□□ -1.63
MSX2P35548 AL591721.1-201ENST00000439849 751 ntTSL 3 BASIC4.85□□□□□ -1.63
MSX2P35548 AC093019.1-201ENST00000443135 252 ntBASIC4.85□□□□□ -1.63
MSX2P35548 TBL1XR1-AS1-201ENST00000454723 414 ntTSL 5 BASIC4.85□□□□□ -1.63
MSX2P35548 OR6K1P-201ENST00000456766 971 ntBASIC4.85□□□□□ -1.63
MSX2P35548 BTF3P5-201ENST00000457252 467 ntBASIC4.85□□□□□ -1.63
MSX2P35548 AC022364.2-201ENST00000457963 554 ntBASIC4.85□□□□□ -1.63
MSX2P35548 LEKR1-206ENST00000483177 546 ntTSL 3 BASIC4.85□□□□□ -1.63
MSX2P35548 AC112204.1-201ENST00000502591 103 ntBASIC4.85□□□□□ -1.63
MSX2P35548 THAP6-203ENST00000502620 582 ntTSL 3 BASIC4.85□□□□□ -1.63
MSX2P35548 KLRA1P-201ENST00000503499 986 ntBASIC4.85□□□□□ -1.63
MSX2P35548 AC106872.4-201ENST00000510050 523 ntBASIC4.85□□□□□ -1.63
MSX2P35548 PANCR-202ENST00000513690 448 ntTSL 2 BASIC4.85□□□□□ -1.63
MSX2P35548 RNU2-46P-201ENST00000517038 113 ntBASIC4.85□□□□□ -1.63
MSX2P35548 AC133634.1-201ENST00000517695 566 ntTSL 3 BASIC4.85□□□□□ -1.63
MSX2P35548 AC021736.1-201ENST00000521143 563 ntTSL 4 BASIC4.85□□□□□ -1.63
MSX2P35548 AC008562.1-201ENST00000521763 330 ntBASIC4.85□□□□□ -1.63
MSX2P35548 IGLVVI-25-1-201ENST00000521893 249 ntBASIC4.85□□□□□ -1.63
MSX2P35548 AF279873.1-201ENST00000523393 313 ntBASIC4.85□□□□□ -1.63
MSX2P35548 AF117829.1-202ENST00000524166 836 ntTSL 3 BASIC4.85□□□□□ -1.63
MSX2P35548 AP000873.2-204ENST00000530825 375 ntTSL 3 BASIC4.85□□□□□ -1.63
MSX2P35548 AC107918.3-201ENST00000533272 382 ntBASIC4.85□□□□□ -1.63
MSX2P35548 AC027018.1-201ENST00000533978 396 ntTSL 4 BASIC4.85□□□□□ -1.63
MSX2P35548 AC027287.2-201ENST00000547559 592 ntTSL 4 BASIC4.85□□□□□ -1.63
MSX2P35548 AC004801.3-201ENST00000547602 962 ntTSL 1 (best) BASIC4.85□□□□□ -1.63
MSX2P35548 AL163932.1-201ENST00000555776 542 ntTSL 4 BASIC4.85□□□□□ -1.63
MSX2P35548 LINC02301-203ENST00000555798 789 ntTSL 3 BASIC4.85□□□□□ -1.63
MSX2P35548 FOPNL-204ENST00000573396 735 ntTSL 3 BASIC4.85□□□□□ -1.63
MSX2P35548 LINC01899-201ENST00000580323 312 ntTSL 5 BASIC4.85□□□□□ -1.63
MSX2P35548 MIR3682-201ENST00000581338 84 ntBASIC4.85□□□□□ -1.63
MSX2P35548 LINC01835-202ENST00000589345 450 ntTSL 3 BASIC4.85□□□□□ -1.63
MSX2P35548 AC135012.2-201ENST00000600234 479 ntTSL 2 BASIC4.85□□□□□ -1.63
MSX2P35548 AL391646.1-201ENST00000603860 190 ntBASIC4.85□□□□□ -1.63
MSX2P35548 AC135507.2-201ENST00000612443 309 ntBASIC4.85□□□□□ -1.63
MSX2P35548 MIR8069-1-201ENST00000616627 86 ntBASIC4.85□□□□□ -1.63
MSX2P35548 MIR8069-2-201ENST00000621412 86 ntBASIC4.85□□□□□ -1.63
MSX2P35548 AC091905.1-201ENST00000624400 311 ntBASIC4.85□□□□□ -1.63
MSX2P35548 CDRT1-208ENST00000630868 794 ntBASIC4.85□□□□□ -1.63
MSX2P35548 OR11H4-203ENST00000641525 1082 ntAPPRIS P1 BASIC4.85□□□□□ -1.63
MSX2P35548 ATF2-221ENST00000538946 1325 ntTSL 5 BASIC4.85□□□□□ -1.63
MSX2P35548 MT-ND4-201ENST00000361381 1378 ntAPPRIS P1 BASIC4.85□□□□□ -1.63
MSX2P35548 MLIP-AS1-201ENST00000434196 1534 ntTSL 2 BASIC4.85□□□□□ -1.63
MSX2P35548 WDR7-201ENST00000254442 14083 ntAPPRIS P1 TSL 1 (best) BASIC4.85□□□□□ -1.63
MSX2P35548 FANCI-201ENST00000300027 4713 ntAPPRIS P3 TSL 5 BASIC4.85□□□□□ -1.63
MSX2P35548 SOBP-204ENST00000618129 1550 ntTSL 1 (best) BASIC4.85□□□□□ -1.63
MSX2P35548 MTERF1-202ENST00000406735 1639 ntAPPRIS ALT2 TSL 2 BASIC4.85□□□□□ -1.63
MSX2P35548 CD86-204ENST00000469710 1604 ntTSL 2 BASIC4.85□□□□□ -1.63
MSX2P35548 PLCB4-204ENST00000378501 5833 ntAPPRIS P4 TSL 5 BASIC4.85□□□□□ -1.63
MSX2P35548 C12orf4-209ENST00000545746 2168 ntAPPRIS P1 TSL 1 (best) BASIC4.85□□□□□ -1.63
MSX2P35548 U2SURP-208ENST00000473835 7276 ntAPPRIS P1 TSL 1 (best) BASIC4.85□□□□□ -1.63
MSX2P35548 DST-202ENST00000312431 17756 ntAPPRIS P2 TSL 5 BASIC4.85□□□□□ -1.63
MSX2P35548 AL022322.2-201ENST00000624072 20397 ntBASIC4.85□□□□□ -1.63
MSX2P35548 RBMS1-202ENST00000392753 3781 ntTSL 5 BASIC4.85□□□□□ -1.63
MSX2P35548 NAIP-210ENST00000523981 4543 ntTSL 1 (best) BASIC4.85□□□□□ -1.63
MSX2P35548 ZNF285-205ENST00000614994 6012 ntAPPRIS P3 TSL 1 (best) BASIC4.85□□□□□ -1.63
MSX2P35548 C2CD6-202ENST00000439140 5512 ntAPPRIS ALT2 TSL 1 (best) BASIC4.84□□□□□ -1.63
MSX2P35548 C1orf141-208ENST00000621590 4179 ntAPPRIS ALT2 TSL 5 BASIC4.84□□□□□ -1.63
MSX2P35548 ZNF345-213ENST00000589046 3120 ntAPPRIS P1 TSL 1 (best) BASIC4.84□□□□□ -1.63
MSX2P35548 PPEF1-202ENST00000361511 2890 ntAPPRIS P1 TSL 1 (best) BASIC4.84□□□□□ -1.63
MSX2P35548 EPHA3-202ENST00000452448 2546 ntTSL 1 (best) BASIC4.84□□□□□ -1.63
MSX2P35548 DTNA-229ENST00000598142 2509 ntTSL 1 (best) BASIC4.84□□□□□ -1.63
MSX2P35548 ADGRL3-217ENST00000514591 6297 ntAPPRIS P2 TSL 5 BASIC4.84□□□□□ -1.63
MSX2P35548 LINC00507-201ENST00000540882 1935 ntTSL 5 BASIC4.84□□□□□ -1.63
MSX2P35548 LMNTD1-201ENST00000282881 1718 ntAPPRIS P3 TSL 2 BASIC4.84□□□□□ -1.63
MSX2P35548 GYPE-201ENST00000358615 1684 ntAPPRIS P1 TSL 1 (best) BASIC4.84□□□□□ -1.63
MSX2P35548 AC092162.3-201ENST00000624511 1624 ntBASIC4.84□□□□□ -1.63
MSX2P35548 MTRNR2L11-201ENST00000604646 1552 ntAPPRIS P1 BASIC4.84□□□□□ -1.63
MSX2P35548 AC091305.2-201ENST00000624049 1576 ntBASIC4.84□□□□□ -1.63
MSX2P35548 KCNRG-201ENST00000312942 1527 ntAPPRIS P1 TSL 1 (best) BASIC4.84□□□□□ -1.63
MSX2P35548 PPP1R9A-201ENST00000289495 3983 ntTSL 1 (best) BASIC4.84□□□□□ -1.63
MSX2P35548 FAM26F-203ENST00000368606 546 ntTSL 3 BASIC4.84□□□□□ -1.63
MSX2P35548 RNU6-657P-201ENST00000383904 107 ntBASIC4.84□□□□□ -1.63
MSX2P35548 RNU6-769P-201ENST00000384407 104 ntBASIC4.84□□□□□ -1.63
MSX2P35548 Y_RNA.529-201ENST00000384586 119 ntBASIC4.84□□□□□ -1.63
MSX2P35548 RNU1-149P-201ENST00000390870 161 ntBASIC4.84□□□□□ -1.63
MSX2P35548 SNORD115.1-201ENST00000391109 76 ntBASIC4.84□□□□□ -1.63
MSX2P35548 Z93019.1-201ENST00000416450 973 ntBASIC4.84□□□□□ -1.63
MSX2P35548 AC234782.4-201ENST00000417646 1048 ntBASIC4.84□□□□□ -1.63
MSX2P35548 ZNF90P2-204ENST00000419323 1075 ntBASIC4.84□□□□□ -1.63
MSX2P35548 AC104777.1-203ENST00000423428 554 ntTSL 3 BASIC4.84□□□□□ -1.63
MSX2P35548 AL161722.2-201ENST00000434731 981 ntBASIC4.84□□□□□ -1.63
MSX2P35548 AC002486.1-201ENST00000435098 391 ntBASIC4.84□□□□□ -1.63
MSX2P35548 AC003092.1-202ENST00000438538 743 ntTSL 3 BASIC4.84□□□□□ -1.63
MSX2P35548 AC007677.1-201ENST00000445757 515 ntBASIC4.84□□□□□ -1.63
Retrieved 100 of 98,524 protein–RNA pairs in 110.1 ms