Protein–RNA interactions for Protein: P29074

PTPN4, Tyrosine-protein phosphatase non-receptor type 4, humanhuman

Predictions only

Length 926 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4P29074 DPPA3-201ENST00000345088 1079 ntAPPRIS P1 TSL 1 (best) BASIC3.82□□□□□ -1.8
PTPN4P29074 SNORA31-201ENST00000362607 130 ntBASIC3.82□□□□□ -1.8
PTPN4P29074 ACEA_U3.1-201ENST00000363057 217 ntBASIC3.82□□□□□ -1.8
PTPN4P29074 UBE2U-201ENST00000371076 1136 ntAPPRIS P2 TSL 1 (best) BASIC3.82□□□□□ -1.8
PTPN4P29074 RNU6-549P-201ENST00000384433 107 ntBASIC3.82□□□□□ -1.8
PTPN4P29074 UBE2V1P9-201ENST00000414760 368 ntBASIC3.82□□□□□ -1.8
PTPN4P29074 AL451062.2-201ENST00000427515 271 ntBASIC3.82□□□□□ -1.8
PTPN4P29074 AC093581.1-202ENST00000430890 391 ntTSL 2 BASIC3.82□□□□□ -1.8
PTPN4P29074 RPL21P112-201ENST00000434403 463 ntBASIC3.82□□□□□ -1.8
PTPN4P29074 AP000477.1-202ENST00000434859 847 ntTSL 3 BASIC3.82□□□□□ -1.8
PTPN4P29074 LINC01378-202ENST00000437514 783 ntTSL 3 BASIC3.82□□□□□ -1.8
PTPN4P29074 LINC01802-201ENST00000438824 523 ntTSL 3 BASIC3.82□□□□□ -1.8
PTPN4P29074 AC064874.1-202ENST00000440101 287 ntTSL 3 BASIC3.82□□□□□ -1.8
PTPN4P29074 ZNF736P1Y-201ENST00000440402 1276 ntBASIC3.82□□□□□ -1.8
PTPN4P29074 AC004865.1-201ENST00000442276 1003 ntBASIC3.82□□□□□ -1.8
PTPN4P29074 AL592437.1-201ENST00000443781 492 ntBASIC3.82□□□□□ -1.8
PTPN4P29074 AL929288.2-201ENST00000446368 407 ntBASIC3.82□□□□□ -1.8
PTPN4P29074 DCUN1D1-204ENST00000469954 970 ntTSL 3 BASIC3.82□□□□□ -1.8
PTPN4P29074 C1GALT1C1L-201ENST00000475092 1172 ntAPPRIS P1 BASIC3.82□□□□□ -1.8
PTPN4P29074 SOX2-OT-207ENST00000476964 606 ntTSL 1 (best) BASIC3.82□□□□□ -1.8
PTPN4P29074 AC015724.1-201ENST00000478577 156 ntBASIC3.82□□□□□ -1.8
PTPN4P29074 RN7SKP209-201ENST00000516888 304 ntBASIC3.82□□□□□ -1.8
PTPN4P29074 SUMO2P20-201ENST00000520803 283 ntBASIC3.82□□□□□ -1.8
PTPN4P29074 PKIA-AS1-203ENST00000522807 692 ntTSL 3 BASIC3.82□□□□□ -1.8
PTPN4P29074 PTS-202ENST00000524931 696 ntTSL 3 BASIC3.82□□□□□ -1.8
PTPN4P29074 AP000857.2-201ENST00000532123 419 ntTSL 3 BASIC3.82□□□□□ -1.8
PTPN4P29074 AC025627.2-201ENST00000576220 160 ntBASIC3.82□□□□□ -1.8
PTPN4P29074 MIR4425-201ENST00000580572 84 ntBASIC3.82□□□□□ -1.8
PTPN4P29074 AC008543.4-201ENST00000585694 442 ntTSL 2 BASIC3.82□□□□□ -1.8
PTPN4P29074 AC006116.9-201ENST00000591630 649 ntTSL 5 BASIC3.82□□□□□ -1.8
PTPN4P29074 AL009028.1-201ENST00000604895 802 ntBASIC3.82□□□□□ -1.8
PTPN4P29074 AL592436.1-201ENST00000605135 558 ntBASIC3.82□□□□□ -1.8
PTPN4P29074 RMST_8.1-201ENST00000610287 165 ntBASIC3.82□□□□□ -1.8
PTPN4P29074 AC244472.1-201ENST00000620773 347 ntAPPRIS P1 BASIC3.82□□□□□ -1.8
PTPN4P29074 PACRG-211ENST00000621363 360 ntTSL 5 BASIC3.82□□□□□ -1.8
PTPN4P29074 AL354798.1-201ENST00000622505 329 ntBASIC3.82□□□□□ -1.8
PTPN4P29074 AC068620.4-201ENST00000636730 1182 ntBASIC3.82□□□□□ -1.8
PTPN4P29074 RAP2C-AS1-202ENST00000441399 3473 ntTSL 2 BASIC3.82□□□□□ -1.8
PTPN4P29074 RGPD4-201ENST00000408999 5464 ntAPPRIS P1 TSL 1 (best) BASIC3.82□□□□□ -1.8
PTPN4P29074 SUCNR1-201ENST00000362032 4181 ntAPPRIS P1 TSL 1 (best) BASIC3.81□□□□□ -1.8
PTPN4P29074 ZNF85-201ENST00000300540 1531 ntTSL 1 (best) BASIC3.81□□□□□ -1.8
PTPN4P29074 AL157700.1-201ENST00000561973 1432 ntBASIC3.81□□□□□ -1.8
PTPN4P29074 CEP170-215ENST00000481987 3031 ntTSL 5 BASIC3.81□□□□□ -1.8
PTPN4P29074 PPBP-201ENST00000296028 715 ntAPPRIS P1 TSL 1 (best) BASIC3.81□□□□□ -1.8
PTPN4P29074 OR6C2-201ENST00000322678 939 ntAPPRIS P1 BASIC3.81□□□□□ -1.8
PTPN4P29074 ZBTB8OS-202ENST00000373501 598 ntTSL 5 BASIC3.81□□□□□ -1.8
PTPN4P29074 RNU6-1151P-201ENST00000384684 107 ntBASIC3.81□□□□□ -1.8
PTPN4P29074 MIR200C-201ENST00000384980 68 ntBASIC3.81□□□□□ -1.8
PTPN4P29074 SNORD65C-201ENST00000390962 71 ntBASIC3.81□□□□□ -1.8
PTPN4P29074 CFHR3-203ENST00000391985 1043 ntTSL 2 BASIC3.81□□□□□ -1.8
PTPN4P29074 AL590704.1-201ENST00000402856 794 ntBASIC3.81□□□□□ -1.8
PTPN4P29074 AL355615.1-201ENST00000406187 641 ntBASIC3.81□□□□□ -1.8
PTPN4P29074 RNU2-37P-201ENST00000410695 177 ntBASIC3.81□□□□□ -1.8
PTPN4P29074 AC073071.1-201ENST00000412410 388 ntTSL 3 BASIC3.81□□□□□ -1.8
PTPN4P29074 IFNAR2-206ENST00000413881 710 ntTSL 5 BASIC3.81□□□□□ -1.8
PTPN4P29074 AC092155.1-202ENST00000416111 932 ntTSL 1 (best) BASIC3.81□□□□□ -1.8
PTPN4P29074 AL590432.1-201ENST00000420071 566 ntTSL 2 BASIC3.81□□□□□ -1.8
PTPN4P29074 LINC01468-201ENST00000422763 570 ntTSL 3 BASIC3.81□□□□□ -1.8
PTPN4P29074 AL160411.1-201ENST00000429853 400 ntTSL 2 BASIC3.81□□□□□ -1.8
PTPN4P29074 AC018644.1-201ENST00000429934 551 ntBASIC3.81□□□□□ -1.8
PTPN4P29074 AL513175.1-201ENST00000431492 780 ntBASIC3.81□□□□□ -1.8
PTPN4P29074 AC083863.1-201ENST00000438811 231 ntBASIC3.81□□□□□ -1.8
PTPN4P29074 AP001432.1-201ENST00000440629 520 ntTSL 2 BASIC3.81□□□□□ -1.8
PTPN4P29074 AL591848.2-201ENST00000442712 522 ntTSL 3 BASIC3.81□□□□□ -1.8
PTPN4P29074 AL355601.1-201ENST00000444701 427 ntTSL 3 BASIC3.81□□□□□ -1.8
PTPN4P29074 ZBTB8OS-205ENST00000465588 548 ntTSL 2 BASIC3.81□□□□□ -1.8
PTPN4P29074 RPS4XP15-201ENST00000489210 795 ntBASIC3.81□□□□□ -1.8
PTPN4P29074 AC068305.1-201ENST00000497406 726 ntBASIC3.81□□□□□ -1.8
PTPN4P29074 AC093725.2-201ENST00000507808 356 ntTSL 2 BASIC3.81□□□□□ -1.8
PTPN4P29074 AC026784.1-201ENST00000507986 352 ntBASIC3.81□□□□□ -1.8
PTPN4P29074 AC104393.1-201ENST00000517495 255 ntTSL 3 BASIC3.81□□□□□ -1.8
PTPN4P29074 AC105999.2-201ENST00000521363 881 ntTSL 2 BASIC3.81□□□□□ -1.8
PTPN4P29074 TPT1-AS1-216ENST00000522845 403 ntTSL 3 BASIC3.81□□□□□ -1.8
PTPN4P29074 AP001999.2-201ENST00000529417 389 ntTSL 3 BASIC3.81□□□□□ -1.8
PTPN4P29074 LINC02386-202ENST00000551287 564 ntTSL 4 BASIC3.81□□□□□ -1.8
PTPN4P29074 AL049779.1-201ENST00000553306 670 ntTSL 2 BASIC3.81□□□□□ -1.8
PTPN4P29074 AL133279.2-201ENST00000556546 428 ntTSL 3 BASIC3.81□□□□□ -1.8
PTPN4P29074 AC079203.2-201ENST00000559867 387 ntTSL 2 BASIC3.81□□□□□ -1.8
PTPN4P29074 AC023824.3-201ENST00000569003 562 ntBASIC3.81□□□□□ -1.8
PTPN4P29074 MIR4504-201ENST00000577413 92 ntBASIC3.81□□□□□ -1.8
PTPN4P29074 AC005899.4-201ENST00000581915 514 ntTSL 4 BASIC3.81□□□□□ -1.8
PTPN4P29074 AC112230.1-201ENST00000604342 547 ntBASIC3.81□□□□□ -1.8
PTPN4P29074 AL365503.1-201ENST00000605247 905 ntBASIC3.81□□□□□ -1.8
PTPN4P29074 MIR6868-201ENST00000611215 58 ntBASIC3.81□□□□□ -1.8
PTPN4P29074 AC012531.5-201ENST00000611375 151 ntBASIC3.81□□□□□ -1.8
PTPN4P29074 MIR6075-201ENST00000620782 95 ntBASIC3.81□□□□□ -1.8
PTPN4P29074 AC106858.1-201ENST00000637497 429 ntBASIC3.81□□□□□ -1.8
PTPN4P29074 FMN2-207ENST00000545751 1913 ntTSL 5 BASIC3.81□□□□□ -1.8
PTPN4P29074 CLIC2-202ENST00000369449 2655 ntAPPRIS P1 TSL 1 (best) BASIC3.81□□□□□ -1.8
PTPN4P29074 USP8P1-201ENST00000494673 3183 ntBASIC3.81□□□□□ -1.8
PTPN4P29074 FRYL-205ENST00000503238 11103 ntAPPRIS P1 TSL 5 BASIC3.8□□□□□ -1.8
PTPN4P29074 MS4A1-212ENST00000534668 3475 ntAPPRIS P1 TSL 2 BASIC3.8□□□□□ -1.8
PTPN4P29074 LTN1-207ENST00000614971 7756 ntTSL 1 (best) BASIC3.8□□□□□ -1.8
PTPN4P29074 THOC1-219ENST00000616322 2078 ntAPPRIS ALT1 TSL 5 BASIC3.8□□□□□ -1.8
PTPN4P29074 ERBIN-212ENST00000508515 4374 ntTSL 5 BASIC3.8□□□□□ -1.8
PTPN4P29074 AC107081.3-201ENST00000612715 2034 ntBASIC3.8□□□□□ -1.8
PTPN4P29074 AL161912.2-201ENST00000565707 3007 ntBASIC3.8□□□□□ -1.8
PTPN4P29074 MACF1-204ENST00000372915 23440 ntAPPRIS ALT2 TSL 5 BASIC3.8□□□□□ -1.8
PTPN4P29074 MANEA-201ENST00000358812 4575 ntAPPRIS P1 TSL 1 (best) BASIC3.8□□□□□ -1.8
PTPN4P29074 SNORD6-201ENST00000365444 73 ntBASIC3.8□□□□□ -1.8
Retrieved 100 of 98,524 protein–RNA pairs in 103.4 ms