Protein–RNA interactions for Protein: P23560

BDNF, Brain-derived neurotrophic factor, humanhuman

Predictions only

Length 247 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BDNFP23560 IGKV2-23-201ENST00000518729 323 ntBASIC4.49□□□□□ -1.69
BDNFP23560 AC024958.1-201ENST00000519364 902 ntTSL 5 BASIC4.49□□□□□ -1.69
BDNFP23560 AC026894.1-202ENST00000533843 477 ntTSL 5 BASIC4.49□□□□□ -1.69
BDNFP23560 ATF7IP2-206ENST00000543967 998 ntTSL 2 BASIC4.49□□□□□ -1.69
BDNFP23560 RPL21P7-201ENST00000557463 483 ntBASIC4.49□□□□□ -1.69
BDNFP23560 AC007224.1-201ENST00000564410 144 ntBASIC4.49□□□□□ -1.69
BDNFP23560 RN7SL600P-201ENST00000581811 299 ntBASIC4.49□□□□□ -1.69
BDNFP23560 XIAPP1-201ENST00000603162 600 ntBASIC4.49□□□□□ -1.69
BDNFP23560 AL591034.3-201ENST00000605511 685 ntBASIC4.49□□□□□ -1.69
BDNFP23560 LINC00649-214ENST00000609132 668 ntTSL 5 BASIC4.49□□□□□ -1.69
BDNFP23560 MKKS-203ENST00000609375 882 ntTSL 2 BASIC4.49□□□□□ -1.69
BDNFP23560 AL360181.4-201ENST00000621752 134 ntBASIC4.49□□□□□ -1.69
BDNFP23560 RBM12B-AS1-201ENST00000623283 653 ntBASIC4.49□□□□□ -1.69
BDNFP23560 PLCB4-206ENST00000414679 3947 ntAPPRIS ALT1 TSL 5 BASIC4.49□□□□□ -1.69
BDNFP23560 PRKACB-202ENST00000370682 4288 ntTSL 1 (best) BASIC4.49□□□□□ -1.69
BDNFP23560 MUC15-204ENST00000527569 1386 ntTSL 1 (best) BASIC4.49□□□□□ -1.69
BDNFP23560 AL136164.4-201ENST00000625013 2135 ntBASIC4.49□□□□□ -1.69
BDNFP23560 RABGAP1L-203ENST00000347255 1744 ntTSL 1 (best) BASIC4.49□□□□□ -1.69
BDNFP23560 CNBD1-202ENST00000518476 1594 ntAPPRIS P2 TSL 1 (best) BASIC4.48□□□□□ -1.69
BDNFP23560 NUTM2B-AS1-213ENST00000619625 7611 ntTSL 2 BASIC4.48□□□□□ -1.69
BDNFP23560 ANO3-204ENST00000531568 3117 ntAPPRIS ALT2 TSL 2 BASIC4.48□□□□□ -1.69
BDNFP23560 ADGRL2-201ENST00000319517 5479 ntAPPRIS P2 TSL 1 (best) BASIC4.48□□□□□ -1.69
BDNFP23560 CCSER1-201ENST00000432775 3927 ntTSL 1 (best) BASIC4.48□□□□□ -1.69
BDNFP23560 IFI16-208ENST00000448393 2245 ntAPPRIS ALT2 TSL 5 BASIC4.48□□□□□ -1.69
BDNFP23560 DTHD1-202ENST00000456874 3365 ntAPPRIS P1 TSL 1 (best) BASIC4.48□□□□□ -1.69
BDNFP23560 WFDC9-201ENST00000326000 659 ntAPPRIS P1 TSL 1 (best) BASIC4.48□□□□□ -1.69
BDNFP23560 OR2M2-201ENST00000359682 1044 ntAPPRIS P1 BASIC4.48□□□□□ -1.69
BDNFP23560 RN7SKP227-201ENST00000364445 330 ntBASIC4.48□□□□□ -1.69
BDNFP23560 RNA5SP479-201ENST00000364858 117 ntBASIC4.48□□□□□ -1.69
BDNFP23560 SNORD65.1-201ENST00000390889 71 ntBASIC4.48□□□□□ -1.69
BDNFP23560 U3.29-201ENST00000391296 212 ntBASIC4.48□□□□□ -1.69
BDNFP23560 RNA5SP146-201ENST00000410743 123 ntBASIC4.48□□□□□ -1.69
BDNFP23560 AC068295.1-201ENST00000413056 153 ntTSL 3 BASIC4.48□□□□□ -1.69
BDNFP23560 CEACAMP8-201ENST00000413902 580 ntBASIC4.48□□□□□ -1.69
BDNFP23560 AC010163.2-201ENST00000416341 381 ntTSL 2 BASIC4.48□□□□□ -1.69
BDNFP23560 Z75741.2-201ENST00000417272 1167 ntBASIC4.48□□□□□ -1.69
BDNFP23560 DYDC1-203ENST00000421924 708 ntAPPRIS P1 TSL 1 (best) BASIC4.48□□□□□ -1.69
BDNFP23560 AL589935.1-218ENST00000434683 529 ntTSL 3 BASIC4.48□□□□□ -1.69
BDNFP23560 LINC00113-203ENST00000442550 572 ntTSL 3 BASIC4.48□□□□□ -1.69
BDNFP23560 VN1R10P-201ENST00000447106 875 ntBASIC4.48□□□□□ -1.69
BDNFP23560 AC114755.5-201ENST00000447760 831 ntBASIC4.48□□□□□ -1.69
BDNFP23560 AC079776.3-201ENST00000450665 370 ntBASIC4.48□□□□□ -1.69
BDNFP23560 RPL29-203ENST00000475248 551 ntAPPRIS P1 TSL 3 BASIC4.48□□□□□ -1.69
BDNFP23560 AF213884.1-201ENST00000488102 463 ntBASIC4.48□□□□□ -1.69
BDNFP23560 RPL7P47-201ENST00000497299 556 ntBASIC4.48□□□□□ -1.69
BDNFP23560 RPS27AP13-201ENST00000498403 237 ntBASIC4.48□□□□□ -1.69
BDNFP23560 AC097372.3-201ENST00000503593 522 ntTSL 3 BASIC4.48□□□□□ -1.69
BDNFP23560 PLAC8-205ENST00000509973 489 ntTSL 1 (best) BASIC4.48□□□□□ -1.69
BDNFP23560 AC092440.1-201ENST00000512563 571 ntTSL 4 BASIC4.48□□□□□ -1.69
BDNFP23560 AC099522.1-202ENST00000514718 367 ntBASIC4.48□□□□□ -1.69
BDNFP23560 RN7SKP21-201ENST00000516503 220 ntBASIC4.48□□□□□ -1.69
BDNFP23560 AC090539.1-201ENST00000523907 434 ntTSL 3 BASIC4.48□□□□□ -1.69
BDNFP23560 AF123462.1-201ENST00000554307 446 ntTSL 3 BASIC4.48□□□□□ -1.69
BDNFP23560 AC051619.4-201ENST00000560034 292 ntTSL 5 BASIC4.48□□□□□ -1.69
BDNFP23560 AC018767.1-201ENST00000566236 405 ntTSL 3 BASIC4.48□□□□□ -1.69
BDNFP23560 MIR3912-201ENST00000577566 105 ntBASIC4.48□□□□□ -1.69
BDNFP23560 AC015908.2-202ENST00000585243 756 ntTSL 3 BASIC4.48□□□□□ -1.69
BDNFP23560 AC021517.1-203ENST00000590257 421 ntTSL 3 BASIC4.48□□□□□ -1.69
BDNFP23560 MIR7515HG-239ENST00000591053 1113 ntTSL 5 BASIC4.48□□□□□ -1.69
BDNFP23560 AC006116.5-201ENST00000591936 559 ntBASIC4.48□□□□□ -1.69
BDNFP23560 AC011468.4-201ENST00000603942 409 ntBASIC4.48□□□□□ -1.69
BDNFP23560 AC244196.2-201ENST00000621184 411 ntAPPRIS P1 BASIC4.48□□□□□ -1.69
BDNFP23560 AC019278.1-201ENST00000623516 479 ntBASIC4.48□□□□□ -1.69
BDNFP23560 ORC4-216ENST00000540442 6472 ntTSL 2 BASIC4.48□□□□□ -1.69
BDNFP23560 IMPG2-201ENST00000193391 8337 ntAPPRIS P1 TSL 1 (best) BASIC4.48□□□□□ -1.69
BDNFP23560 TAOK3-202ENST00000419821 4301 ntAPPRIS P1 TSL 1 (best) BASIC4.48□□□□□ -1.69
BDNFP23560 AC024560.2-201ENST00000507981 1497 ntBASIC4.48□□□□□ -1.69
BDNFP23560 LYST-201ENST00000389793 13480 ntAPPRIS P1 TSL 5 BASIC4.48□□□□□ -1.69
BDNFP23560 LINC01566-202ENST00000569242 2801 ntTSL 1 (best) BASIC4.48□□□□□ -1.69
BDNFP23560 SMC6-203ENST00000402989 3729 ntAPPRIS P1 TSL 2 BASIC4.48□□□□□ -1.69
BDNFP23560 GAB1-203ENST00000505913 2477 ntTSL 2 BASIC4.48□□□□□ -1.69
BDNFP23560 CTNNA3-203ENST00000433211 10675 ntAPPRIS P1 TSL 1 (best) BASIC4.48□□□□□ -1.69
BDNFP23560 ZNF660-201ENST00000322734 5834 ntAPPRIS P1 TSL 2 BASIC4.48□□□□□ -1.69
BDNFP23560 ACADM-203ENST00000420607 1332 ntAPPRIS ALT1 TSL 1 (best) BASIC4.47□□□□□ -1.69
BDNFP23560 BTAF1-204ENST00000544642 6938 ntAPPRIS ALT1 TSL 5 BASIC4.47□□□□□ -1.69
BDNFP23560 RNF180-202ENST00000389100 4906 ntAPPRIS P1 TSL 1 (best) BASIC4.47□□□□□ -1.69
BDNFP23560 FKTN-201ENST00000223528 7364 ntAPPRIS P1 TSL 1 (best) BASIC4.47□□□□□ -1.69
BDNFP23560 SLC17A4-201ENST00000377905 3616 ntAPPRIS P1 TSL 1 (best) BASIC4.47□□□□□ -1.69
BDNFP23560 GABRG2-208ENST00000638552 3710 ntTSL 5 BASIC4.47□□□□□ -1.69
BDNFP23560 SNORD51-201ENST00000384320 80 ntBASIC4.47□□□□□ -1.69
BDNFP23560 SNORD3H-201ENST00000384486 214 ntBASIC4.47□□□□□ -1.69
BDNFP23560 AC016769.3-201ENST00000396562 315 ntBASIC4.47□□□□□ -1.69
BDNFP23560 CYCSP45-201ENST00000402289 315 ntBASIC4.47□□□□□ -1.69
BDNFP23560 AL022722.2-201ENST00000402519 180 ntBASIC4.47□□□□□ -1.69
BDNFP23560 RPL23AP47-201ENST00000408017 460 ntBASIC4.47□□□□□ -1.69
BDNFP23560 MOB4-205ENST00000409916 829 ntTSL 3 BASIC4.47□□□□□ -1.69
BDNFP23560 RNA5SP317-201ENST00000410176 116 ntBASIC4.47□□□□□ -1.69
BDNFP23560 RNU2-15P-201ENST00000410692 191 ntBASIC4.47□□□□□ -1.69
BDNFP23560 RNA5SP311-201ENST00000411290 116 ntBASIC4.47□□□□□ -1.69
BDNFP23560 AC092484.1-201ENST00000420548 833 ntTSL 5 BASIC4.47□□□□□ -1.69
BDNFP23560 GTF2IP7-202ENST00000436677 309 ntBASIC4.47□□□□□ -1.69
BDNFP23560 AC093155.1-201ENST00000440164 826 ntBASIC4.47□□□□□ -1.69
BDNFP23560 LINC00366-201ENST00000441430 435 ntTSL 2 BASIC4.47□□□□□ -1.69
BDNFP23560 ARL4AP3-201ENST00000441452 574 ntBASIC4.47□□□□□ -1.69
BDNFP23560 HMGB3P6-201ENST00000444896 598 ntBASIC4.47□□□□□ -1.69
BDNFP23560 AC009365.2-201ENST00000453078 799 ntTSL 3 BASIC4.47□□□□□ -1.69
BDNFP23560 AC093157.1-204ENST00000454721 753 ntTSL 3 BASIC4.47□□□□□ -1.69
BDNFP23560 AL080313.2-201ENST00000456440 489 ntTSL 3 BASIC4.47□□□□□ -1.69
BDNFP23560 AL445488.1-201ENST00000457272 706 ntTSL 5 BASIC4.47□□□□□ -1.69
BDNFP23560 AC004692.2-202ENST00000458680 478 ntTSL 3 BASIC4.47□□□□□ -1.69
Retrieved 100 of 98,524 protein–RNA pairs in 96.6 ms