Protein–RNA interactions for Protein: P09429

HMGB1, High mobility group protein B1, humanhuman

Known RBP Predictions only

Length 215 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P09429 AC080013.3-201ENST00000606839 578 ntBASIC5.47□□□□□ -1.53
HMGB1P09429 TUG1_1.1-201ENST00000610654 145 ntBASIC5.47□□□□□ -1.53
HMGB1P09429 LGALS13-204ENST00000621475 494 ntAPPRIS ALT2 TSL 5 BASIC5.47□□□□□ -1.53
HMGB1P09429 AL078595.3-201ENST00000623815 1166 ntBASIC5.47□□□□□ -1.53
HMGB1P09429 U3.53-201ENST00000628922 216 ntBASIC5.47□□□□□ -1.53
HMGB1P09429 OR2M2-202ENST00000641211 1229 ntAPPRIS P1 BASIC5.47□□□□□ -1.53
HMGB1P09429 OSBPL6-201ENST00000190611 10513 ntAPPRIS P3 TSL 1 (best) BASIC5.47□□□□□ -1.53
HMGB1P09429 MRPL50-201ENST00000374865 3332 ntAPPRIS P1 TSL 1 (best) BASIC5.47□□□□□ -1.53
HMGB1P09429 CFAP221-215ENST00000598644 1532 ntTSL 2 BASIC5.47□□□□□ -1.53
HMGB1P09429 LINC00862-201ENST00000367355 1417 ntTSL 1 (best) BASIC5.47□□□□□ -1.53
HMGB1P09429 PLCL2-202ENST00000432376 3940 ntAPPRIS P3 TSL 1 (best) BASIC5.46□□□□□ -1.53
HMGB1P09429 PCDH15-211ENST00000395440 3177 ntTSL 5 BASIC5.46□□□□□ -1.54
HMGB1P09429 GPR180-201ENST00000376958 8822 ntAPPRIS P1 TSL 1 (best) BASIC5.46□□□□□ -1.54
HMGB1P09429 ZNF107-203ENST00000395391 6094 ntTSL 1 (best) BASIC5.46□□□□□ -1.54
HMGB1P09429 RNA5SP295-201ENST00000362655 121 ntBASIC5.46□□□□□ -1.54
HMGB1P09429 SNORA71.2-201ENST00000364941 134 ntBASIC5.46□□□□□ -1.54
HMGB1P09429 CEACAMP8-201ENST00000413902 580 ntBASIC5.46□□□□□ -1.54
HMGB1P09429 AC093698.1-201ENST00000423843 571 ntBASIC5.46□□□□□ -1.54
HMGB1P09429 AL357375.1-201ENST00000424274 525 ntTSL 3 BASIC5.46□□□□□ -1.54
HMGB1P09429 AL049637.1-201ENST00000424664 503 ntTSL 5 BASIC5.46□□□□□ -1.54
HMGB1P09429 AL080248.1-201ENST00000428954 388 ntTSL 3 BASIC5.46□□□□□ -1.54
HMGB1P09429 RPS25P9-201ENST00000435591 252 ntBASIC5.46□□□□□ -1.54
HMGB1P09429 RPL12P3-201ENST00000440080 396 ntBASIC5.46□□□□□ -1.54
HMGB1P09429 AL121871.1-201ENST00000443413 436 ntBASIC5.46□□□□□ -1.54
HMGB1P09429 GHRL-209ENST00000446937 217 ntTSL 1 (best) BASIC5.46□□□□□ -1.54
HMGB1P09429 AC009365.2-201ENST00000453078 799 ntTSL 3 BASIC5.46□□□□□ -1.54
HMGB1P09429 BX322784.1-201ENST00000455793 1077 ntBASIC5.46□□□□□ -1.54
HMGB1P09429 LINC02229-201ENST00000508486 661 ntTSL 3 BASIC5.46□□□□□ -1.54
HMGB1P09429 DEFB131D-201ENST00000526803 184 ntBASIC5.46□□□□□ -1.54
HMGB1P09429 MS4A13-204ENST00000527948 790 ntTSL 1 (best) BASIC5.46□□□□□ -1.54
HMGB1P09429 RAP1B-224ENST00000541216 701 ntTSL 1 (best) BASIC5.46□□□□□ -1.54
HMGB1P09429 COX6CP3-201ENST00000580869 223 ntBASIC5.46□□□□□ -1.54
HMGB1P09429 AC007448.2-201ENST00000583452 380 ntTSL 3 BASIC5.46□□□□□ -1.54
HMGB1P09429 AC091178.1-203ENST00000584586 279 ntBASIC5.46□□□□□ -1.54
HMGB1P09429 RPL7P50-201ENST00000600588 727 ntBASIC5.46□□□□□ -1.54
HMGB1P09429 AC110741.2-201ENST00000605278 268 ntBASIC5.46□□□□□ -1.54
HMGB1P09429 AC027449.1-201ENST00000608890 407 ntBASIC5.46□□□□□ -1.54
HMGB1P09429 AC090912.3-201ENST00000609775 533 ntBASIC5.46□□□□□ -1.54
HMGB1P09429 AC245297.2-201ENST00000610119 565 ntBASIC5.46□□□□□ -1.54
HMGB1P09429 SATB1-AS1-269ENST00000630766 591 ntTSL 5 BASIC5.46□□□□□ -1.54
HMGB1P09429 AC013470.2-206ENST00000636804 771 ntAPPRIS P5 TSL 5 BASIC5.46□□□□□ -1.54
HMGB1P09429 ZNF12-203ENST00000404360 4474 ntTSL 1 (best) BASIC5.46□□□□□ -1.54
HMGB1P09429 EOGT-210ENST00000615922 1931 ntBASIC5.46□□□□□ -1.54
HMGB1P09429 CYP3A4-201ENST00000336411 2153 ntAPPRIS P1 TSL 1 (best) BASIC5.46□□□□□ -1.54
HMGB1P09429 CCNT2-201ENST00000264157 6917 ntAPPRIS P1 TSL 1 (best) BASIC5.46□□□□□ -1.54
HMGB1P09429 WDR49-201ENST00000308378 2594 ntAPPRIS P2 TSL 1 (best) BASIC5.46□□□□□ -1.54
HMGB1P09429 CARF-203ENST00000414439 2099 ntTSL 2 BASIC5.46□□□□□ -1.54
HMGB1P09429 LRP6-201ENST00000261349 10020 ntAPPRIS P1 TSL 1 (best) BASIC5.45□□□□□ -1.54
HMGB1P09429 RTKN2-201ENST00000315289 2383 ntTSL 2 BASIC5.45□□□□□ -1.54
HMGB1P09429 PIK3CB-214ENST00000544716 3181 ntTSL 1 (best) BASIC5.45□□□□□ -1.54
HMGB1P09429 MYNN-202ENST00000356716 2833 ntAPPRIS P1 TSL 1 (best) BASIC5.45□□□□□ -1.54
HMGB1P09429 CHORDC1-206ENST00000529987 1698 ntTSL 3 BASIC5.45□□□□□ -1.54
HMGB1P09429 HIST1H2BD-201ENST00000289316 789 ntAPPRIS P1 TSL 1 (best) BASIC5.45□□□□□ -1.54
HMGB1P09429 CXCL10-201ENST00000306602 1176 ntAPPRIS P1 TSL 1 (best) BASIC5.45□□□□□ -1.54
HMGB1P09429 OR51I1-201ENST00000380211 945 ntAPPRIS P1 BASIC5.45□□□□□ -1.54
HMGB1P09429 KRTAP22-2-201ENST00000382830 293 ntAPPRIS P1 BASIC5.45□□□□□ -1.54
HMGB1P09429 MIR550A3-201ENST00000390735 95 ntBASIC5.45□□□□□ -1.54
HMGB1P09429 MIR298-201ENST00000401212 88 ntBASIC5.45□□□□□ -1.54
HMGB1P09429 AL591034.1-201ENST00000407447 340 ntBASIC5.45□□□□□ -1.54
HMGB1P09429 LINC01507-201ENST00000417801 446 ntTSL 5 BASIC5.45□□□□□ -1.54
HMGB1P09429 EZH2P1-201ENST00000431167 291 ntBASIC5.45□□□□□ -1.54
HMGB1P09429 ARPC3P5-201ENST00000448802 534 ntBASIC5.45□□□□□ -1.54
HMGB1P09429 LINC01312-202ENST00000456347 813 ntTSL 1 (best) BASIC5.45□□□□□ -1.54
HMGB1P09429 AL133477.1-201ENST00000457472 514 ntBASIC5.45□□□□□ -1.54
HMGB1P09429 OR9M1P-201ENST00000459641 921 ntBASIC5.45□□□□□ -1.54
HMGB1P09429 RPL32P9-201ENST00000487963 407 ntBASIC5.45□□□□□ -1.54
HMGB1P09429 RPS6P4-201ENST00000494693 758 ntBASIC5.45□□□□□ -1.54
HMGB1P09429 NDUFA5P12-201ENST00000503796 343 ntBASIC5.45□□□□□ -1.54
HMGB1P09429 CTD-2350J17.1-201ENST00000509228 362 ntTSL 2 BASIC5.45□□□□□ -1.54
HMGB1P09429 AC093534.2-201ENST00000511418 420 ntTSL 3 BASIC5.45□□□□□ -1.54
HMGB1P09429 RNA5SP446-201ENST00000515955 82 ntBASIC5.45□□□□□ -1.54
HMGB1P09429 AC021736.1-201ENST00000521143 563 ntTSL 4 BASIC5.45□□□□□ -1.54
HMGB1P09429 AC105233.3-201ENST00000531125 744 ntBASIC5.45□□□□□ -1.54
HMGB1P09429 AC084819.1-201ENST00000537293 424 ntTSL 1 (best) BASIC5.45□□□□□ -1.54
HMGB1P09429 LINC01486-201ENST00000538041 716 ntTSL 2 BASIC5.45□□□□□ -1.54
HMGB1P09429 AL160237.1-201ENST00000554526 572 ntTSL 4 BASIC5.45□□□□□ -1.54
HMGB1P09429 AL359237.1-202ENST00000556168 487 ntTSL 5 BASIC5.45□□□□□ -1.54
HMGB1P09429 ATP5J2P6-201ENST00000565203 266 ntBASIC5.45□□□□□ -1.54
HMGB1P09429 AC079171.1-201ENST00000568788 914 ntBASIC5.45□□□□□ -1.54
HMGB1P09429 BNIP3P32-201ENST00000600015 554 ntBASIC5.45□□□□□ -1.54
HMGB1P09429 BDH2P1-201ENST00000602288 736 ntBASIC5.45□□□□□ -1.54
HMGB1P09429 MRPS35P3-201ENST00000603189 709 ntBASIC5.45□□□□□ -1.54
HMGB1P09429 AC104785.1-201ENST00000603220 588 ntBASIC5.45□□□□□ -1.54
HMGB1P09429 AC106900.2-201ENST00000604994 317 ntBASIC5.45□□□□□ -1.54
HMGB1P09429 CGA-204ENST00000627148 1010 ntAPPRIS P1 TSL 1 (best) BASIC5.45□□□□□ -1.54
HMGB1P09429 LINC01002-206ENST00000631772 539 ntTSL 4 BASIC5.45□□□□□ -1.54
HMGB1P09429 ACADM-203ENST00000420607 1332 ntAPPRIS ALT1 TSL 1 (best) BASIC5.45□□□□□ -1.54
HMGB1P09429 ERICH3-AS1-202ENST00000612390 4874 ntTSL 1 (best) BASIC5.45□□□□□ -1.54
HMGB1P09429 DDX60L-209ENST00000511577 6781 ntAPPRIS P1 TSL 5 BASIC5.44□□□□□ -1.54
HMGB1P09429 RAP1B-201ENST00000250559 13438 ntAPPRIS P1 TSL 1 (best) BASIC5.44□□□□□ -1.54
HMGB1P09429 AL360270.1-201ENST00000440689 2359 ntTSL 2 BASIC5.44□□□□□ -1.54
HMGB1P09429 GABRG2-222ENST00000639975 3662 ntTSL 5 BASIC5.44□□□□□ -1.54
HMGB1P09429 STON1-GTF2A1L-204ENST00000405008 3821 ntAPPRIS P1 TSL 5 BASIC5.44□□□□□ -1.54
HMGB1P09429 SERPINA7-201ENST00000327674 2642 ntAPPRIS P1 TSL 1 (best) BASIC5.44□□□□□ -1.54
HMGB1P09429 RNA5SP28-201ENST00000363841 119 ntBASIC5.44□□□□□ -1.54
HMGB1P09429 C1orf54-201ENST00000369098 418 ntTSL 1 (best) BASIC5.44□□□□□ -1.54
HMGB1P09429 TRAV26-2-201ENST00000390460 327 ntAPPRIS P1 BASIC5.44□□□□□ -1.54
HMGB1P09429 RNU6-952P-201ENST00000391164 108 ntBASIC5.44□□□□□ -1.54
HMGB1P09429 USP9YP33-201ENST00000412220 421 ntBASIC5.44□□□□□ -1.54
HMGB1P09429 TTTY12-201ENST00000413466 979 ntTSL 1 (best) BASIC5.44□□□□□ -1.54
Retrieved 100 of 98,524 protein–RNA pairs in 99.7 ms