Protein–RNA interactions for Protein: P06340

HLA-DOA, HLA class II histocompatibility antigen, DO alpha chain, humanhuman

Predictions only

Length 250 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DOAP06340 NEK4P1-201ENST00000433383 879 ntBASIC5.09□□□□□ -1.59
HLA-DOAP06340 AL592494.1-201ENST00000437523 309 ntTSL 5 BASIC5.09□□□□□ -1.59
HLA-DOAP06340 LINC00278-202ENST00000444263 587 ntTSL 3 BASIC5.09□□□□□ -1.59
HLA-DOAP06340 RPL23AP81-201ENST00000455252 467 ntBASIC5.09□□□□□ -1.59
HLA-DOAP06340 BX248409.1-201ENST00000455497 255 ntBASIC5.09□□□□□ -1.59
HLA-DOAP06340 SUMO2P2-201ENST00000456482 255 ntBASIC5.09□□□□□ -1.59
HLA-DOAP06340 MTND2P33-201ENST00000506452 1031 ntBASIC5.09□□□□□ -1.59
HLA-DOAP06340 AC093766.1-202ENST00000513400 718 ntTSL 3 BASIC5.09□□□□□ -1.59
HLA-DOAP06340 RNU6-1225P-201ENST00000516336 65 ntBASIC5.09□□□□□ -1.59
HLA-DOAP06340 RN7SKP31-201ENST00000516354 278 ntBASIC5.09□□□□□ -1.59
HLA-DOAP06340 RNA5SP73-201ENST00000516744 108 ntBASIC5.09□□□□□ -1.59
HLA-DOAP06340 AC025437.2-201ENST00000518103 548 ntTSL 4 BASIC5.09□□□□□ -1.59
HLA-DOAP06340 SNHG6-202ENST00000520619 479 ntTSL 3 BASIC5.09□□□□□ -1.59
HLA-DOAP06340 AC005225.1-201ENST00000553394 937 ntTSL 3 BASIC5.09□□□□□ -1.59
HLA-DOAP06340 AC110023.1-201ENST00000554318 457 ntTSL 3 BASIC5.09□□□□□ -1.59
HLA-DOAP06340 AC118755.1-201ENST00000572923 195 ntTSL 3 BASIC5.09□□□□□ -1.59
HLA-DOAP06340 OR4K7P-201ENST00000580232 945 ntBASIC5.09□□□□□ -1.59
HLA-DOAP06340 AP005262.1-201ENST00000582646 997 ntBASIC5.09□□□□□ -1.59
HLA-DOAP06340 RPL7P50-201ENST00000600588 727 ntBASIC5.09□□□□□ -1.59
HLA-DOAP06340 RNF138P2-201ENST00000603490 592 ntBASIC5.09□□□□□ -1.59
HLA-DOAP06340 HSPE1-MOB4-201ENST00000604458 890 ntAPPRIS P1 TSL 3 BASIC5.09□□□□□ -1.59
HLA-DOAP06340 BPY2B-204ENST00000615850 321 ntAPPRIS P5 TSL 1 (best) BASIC5.09□□□□□ -1.59
HLA-DOAP06340 BPY2C-204ENST00000618574 321 ntAPPRIS P5 TSL 1 (best) BASIC5.09□□□□□ -1.59
HLA-DOAP06340 AC015726.3-201ENST00000624501 418 ntBASIC5.09□□□□□ -1.59
HLA-DOAP06340 LINC01002-227ENST00000633363 541 ntTSL 1 (best) BASIC5.09□□□□□ -1.59
HLA-DOAP06340 AC127502.3-201ENST00000636170 1206 ntBASIC5.09□□□□□ -1.59
HLA-DOAP06340 AC068870.3-201ENST00000625077 2536 ntBASIC5.09□□□□□ -1.59
HLA-DOAP06340 TFPI-203ENST00000392365 3649 ntAPPRIS P1 TSL 5 BASIC5.09□□□□□ -1.59
HLA-DOAP06340 AC011604.2-201ENST00000381541 2268 ntAPPRIS ALT2 TSL 2 BASIC5.09□□□□□ -1.59
HLA-DOAP06340 PIGW-206ENST00000620233 2264 ntAPPRIS P1 TSL 2 BASIC5.09□□□□□ -1.59
HLA-DOAP06340 KCNMB2-210ENST00000617329 2214 ntTSL 2 BASIC5.09□□□□□ -1.59
HLA-DOAP06340 NUDCD1-202ENST00000427660 2098 ntTSL 1 (best) BASIC5.09□□□□□ -1.59
HLA-DOAP06340 FANCD2-202ENST00000383807 5102 ntAPPRIS ALT2 TSL 1 (best) BASIC5.09□□□□□ -1.6
HLA-DOAP06340 AL133243.3-201ENST00000617415 3004 ntBASIC5.09□□□□□ -1.6
HLA-DOAP06340 CDKL3-210ENST00000523832 1501 ntAPPRIS ALT2 TSL 1 (best) BASIC5.08□□□□□ -1.6
HLA-DOAP06340 PSG1-201ENST00000244296 2276 ntAPPRIS P3 TSL 1 (best) BASIC5.08□□□□□ -1.6
HLA-DOAP06340 AC027228.2-201ENST00000567141 2154 ntBASIC5.08□□□□□ -1.6
HLA-DOAP06340 AP001267.1-201ENST00000531742 2074 ntTSL 2 BASIC5.08□□□□□ -1.6
HLA-DOAP06340 AC010266.2-201ENST00000564741 3255 ntBASIC5.08□□□□□ -1.6
HLA-DOAP06340 PPP1R9A-202ENST00000340694 9689 ntAPPRIS P1 TSL 5 BASIC5.08□□□□□ -1.6
HLA-DOAP06340 PMCHL1-201ENST00000418902 1917 ntTSL 1 (best) BASIC5.08□□□□□ -1.6
HLA-DOAP06340 Y_RNA.311-201ENST00000365068 96 ntBASIC5.08□□□□□ -1.6
HLA-DOAP06340 S100A10-201ENST00000368809 616 ntAPPRIS P1 TSL 3 BASIC5.08□□□□□ -1.6
HLA-DOAP06340 RNY3P14-201ENST00000384309 102 ntBASIC5.08□□□□□ -1.6
HLA-DOAP06340 MIR16-1-201ENST00000385271 89 ntBASIC5.08□□□□□ -1.6
HLA-DOAP06340 AL078604.1-201ENST00000404609 466 ntBASIC5.08□□□□□ -1.6
HLA-DOAP06340 AL512430.2-201ENST00000406786 339 ntBASIC5.08□□□□□ -1.6
HLA-DOAP06340 RNU6-628P-201ENST00000410675 107 ntBASIC5.08□□□□□ -1.6
HLA-DOAP06340 VDAC1P9-201ENST00000412766 841 ntBASIC5.08□□□□□ -1.6
HLA-DOAP06340 AC007899.1-201ENST00000412776 775 ntBASIC5.08□□□□□ -1.6
HLA-DOAP06340 LINC01934-201ENST00000414750 391 ntTSL 3 BASIC5.08□□□□□ -1.6
HLA-DOAP06340 AL353608.1-201ENST00000419576 416 ntTSL 5 BASIC5.08□□□□□ -1.6
HLA-DOAP06340 Z99497.1-201ENST00000421282 135 ntBASIC5.08□□□□□ -1.6
HLA-DOAP06340 AL357375.1-201ENST00000424274 525 ntTSL 3 BASIC5.08□□□□□ -1.6
HLA-DOAP06340 LINC01799-202ENST00000426260 625 ntTSL 3 BASIC5.08□□□□□ -1.6
HLA-DOAP06340 ARL6IP1P2-201ENST00000431356 563 ntBASIC5.08□□□□□ -1.6
HLA-DOAP06340 PPIAP13-201ENST00000434706 478 ntBASIC5.08□□□□□ -1.6
HLA-DOAP06340 AC241584.1-201ENST00000438469 1241 ntBASIC5.08□□□□□ -1.6
HLA-DOAP06340 AC092809.1-201ENST00000441469 474 ntBASIC5.08□□□□□ -1.6
HLA-DOAP06340 RPL7AP28-201ENST00000464513 571 ntBASIC5.08□□□□□ -1.6
HLA-DOAP06340 RPL7P22-201ENST00000466005 733 ntBASIC5.08□□□□□ -1.6
HLA-DOAP06340 RPL23AP65-201ENST00000475608 468 ntBASIC5.08□□□□□ -1.6
HLA-DOAP06340 AC093824.1-201ENST00000508796 343 ntBASIC5.08□□□□□ -1.6
HLA-DOAP06340 AC008549.1-201ENST00000512900 643 ntBASIC5.08□□□□□ -1.6
HLA-DOAP06340 IGKV1OR2-1-201ENST00000514060 354 ntBASIC5.08□□□□□ -1.6
HLA-DOAP06340 AC099522.1-202ENST00000514718 367 ntBASIC5.08□□□□□ -1.6
HLA-DOAP06340 SNHG1-217ENST00000541578 588 ntTSL 3 BASIC5.08□□□□□ -1.6
HLA-DOAP06340 OR5V1-216ENST00000543825 1048 ntAPPRIS P1 BASIC5.08□□□□□ -1.6
HLA-DOAP06340 OR7K1P-201ENST00000546439 926 ntBASIC5.08□□□□□ -1.6
HLA-DOAP06340 AC074029.1-201ENST00000552531 1044 ntBASIC5.08□□□□□ -1.6
HLA-DOAP06340 RPL23AP97-201ENST00000568955 471 ntBASIC5.08□□□□□ -1.6
HLA-DOAP06340 AC004147.1-201ENST00000580658 299 ntTSL 3 BASIC5.08□□□□□ -1.6
HLA-DOAP06340 AC011524.1-201ENST00000590167 240 ntTSL 3 BASIC5.08□□□□□ -1.6
HLA-DOAP06340 LINC00347-205ENST00000597518 868 ntTSL 5 BASIC5.08□□□□□ -1.6
HLA-DOAP06340 AC090948.2-201ENST00000607363 564 ntBASIC5.08□□□□□ -1.6
HLA-DOAP06340 AC106028.5-201ENST00000610332 395 ntBASIC5.08□□□□□ -1.6
HLA-DOAP06340 AC007546.1-201ENST00000619452 559 ntBASIC5.08□□□□□ -1.6
HLA-DOAP06340 AC124312.6-202ENST00000623624 418 ntBASIC5.08□□□□□ -1.6
HLA-DOAP06340 AC099063.3-201ENST00000642066 185 ntBASIC5.08□□□□□ -1.6
HLA-DOAP06340 PTGFR-203ENST00000370758 4337 ntAPPRIS P1 TSL 1 (best) BASIC5.08□□□□□ -1.6
HLA-DOAP06340 ZNF616-204ENST00000600228 4335 ntAPPRIS P1 TSL 1 (best) BASIC5.08□□□□□ -1.6
HLA-DOAP06340 GABRG2-217ENST00000639384 5360 ntTSL 5 BASIC5.08□□□□□ -1.6
HLA-DOAP06340 PHLDB2-214ENST00000495180 4159 ntTSL 2 BASIC5.08□□□□□ -1.6
HLA-DOAP06340 WDFY3-201ENST00000295888 14247 ntAPPRIS P1 TSL 1 (best) BASIC5.08□□□□□ -1.6
HLA-DOAP06340 AL157756.1-201ENST00000532515 2859 ntTSL 1 (best) BASIC5.08□□□□□ -1.6
HLA-DOAP06340 MPDZ-211ENST00000536827 6176 ntAPPRIS ALT2 TSL 1 (best) BASIC5.08□□□□□ -1.6
HLA-DOAP06340 FMO2-201ENST00000209929 3851 ntAPPRIS P1 TSL 1 (best) BASIC5.08□□□□□ -1.6
HLA-DOAP06340 WDR72-204ENST00000559418 3602 ntTSL 5 BASIC5.08□□□□□ -1.6
HLA-DOAP06340 AL353743.4-201ENST00000422653 1547 ntBASIC5.07□□□□□ -1.6
HLA-DOAP06340 AJ009632.2-202ENST00000634644 1513 ntTSL 5 BASIC5.07□□□□□ -1.6
HLA-DOAP06340 Z99496.1-201ENST00000469424 1477 ntBASIC5.07□□□□□ -1.6
HLA-DOAP06340 ZNF510-201ENST00000223428 5154 ntAPPRIS P1 TSL 1 (best) BASIC5.07□□□□□ -1.6
HLA-DOAP06340 ALG14-201ENST00000370205 9367 ntAPPRIS P1 TSL 1 (best) BASIC5.07□□□□□ -1.6
HLA-DOAP06340 IQCH-214ENST00000629425 1822 ntTSL 1 (best) BASIC5.07□□□□□ -1.6
HLA-DOAP06340 PTPN13-201ENST00000316707 7546 ntAPPRIS ALT2 TSL 1 (best) BASIC5.07□□□□□ -1.6
HLA-DOAP06340 BCLAF1-207ENST00000527759 4373 ntAPPRIS ALT2 TSL 1 (best) BASIC5.07□□□□□ -1.6
HLA-DOAP06340 PKIB-202ENST00000354275 1043 ntAPPRIS P1 TSL 1 (best) BASIC5.07□□□□□ -1.6
HLA-DOAP06340 RNU6-374P-201ENST00000364146 108 ntBASIC5.07□□□□□ -1.6
HLA-DOAP06340 RNY3P10-201ENST00000384764 102 ntBASIC5.07□□□□□ -1.6
HLA-DOAP06340 IQCA1-AS1-201ENST00000413353 489 ntTSL 3 BASIC5.07□□□□□ -1.6
Retrieved 100 of 98,524 protein–RNA pairs in 79.4 ms