Protein–RNA interactions for Protein: O15457

MSH4, MutS protein homolog 4, humanhuman

Predictions only

Length 936 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH4O15457 MTCO1P18-201ENST00000455518 1419 ntBASIC3.78□□□□□ -1.8
MSH4O15457 LINC01505-206ENST00000637046 4266 ntTSL 5 BASIC3.78□□□□□ -1.8
MSH4O15457 PHF6-201ENST00000332070 4759 ntAPPRIS P2 TSL 1 (best) BASIC3.78□□□□□ -1.81
MSH4O15457 SLC38A9-223ENST00000515629 2673 ntTSL 2 BASIC3.77□□□□□ -1.81
MSH4O15457 AP001486.2-201ENST00000561652 5113 ntBASIC3.77□□□□□ -1.81
MSH4O15457 IFT80-220ENST00000483465 4044 ntTSL 1 (best) BASIC3.77□□□□□ -1.81
MSH4O15457 RNF6-201ENST00000346166 3282 ntAPPRIS P1 TSL 1 (best) BASIC3.77□□□□□ -1.81
MSH4O15457 ACADM-203ENST00000420607 1332 ntAPPRIS ALT1 TSL 1 (best) BASIC3.77□□□□□ -1.81
MSH4O15457 OR5I1-201ENST00000301532 945 ntAPPRIS P1 BASIC3.77□□□□□ -1.81
MSH4O15457 RNU6-792P-201ENST00000363490 107 ntBASIC3.77□□□□□ -1.81
MSH4O15457 ATF1P1-201ENST00000406040 927 ntBASIC3.77□□□□□ -1.81
MSH4O15457 HMGN1P24-201ENST00000412282 298 ntBASIC3.77□□□□□ -1.81
MSH4O15457 HMGB3P31-201ENST00000413333 595 ntBASIC3.77□□□□□ -1.81
MSH4O15457 AC126124.2-201ENST00000413542 321 ntBASIC3.77□□□□□ -1.81
MSH4O15457 AL158825.1-201ENST00000414735 521 ntBASIC3.77□□□□□ -1.81
MSH4O15457 FRMPD3-AS1-201ENST00000415252 457 ntTSL 3 BASIC3.77□□□□□ -1.81
MSH4O15457 RPF2P1-201ENST00000424137 906 ntBASIC3.77□□□□□ -1.81
MSH4O15457 VN1R42P-201ENST00000424651 344 ntBASIC3.77□□□□□ -1.81
MSH4O15457 AL033504.1-201ENST00000427015 773 ntTSL 2 BASIC3.77□□□□□ -1.81
MSH4O15457 RPS7P5-201ENST00000441482 581 ntBASIC3.77□□□□□ -1.81
MSH4O15457 C1orf143-201ENST00000443836 762 ntTSL 2 BASIC3.77□□□□□ -1.81
MSH4O15457 NDUFAF4P2-201ENST00000445374 520 ntBASIC3.77□□□□□ -1.81
MSH4O15457 LINC01810-201ENST00000450397 411 ntTSL 3 BASIC3.77□□□□□ -1.81
MSH4O15457 RPL12P26-201ENST00000452430 487 ntBASIC3.77□□□□□ -1.81
MSH4O15457 AC096992.1-201ENST00000459808 709 ntBASIC3.77□□□□□ -1.81
MSH4O15457 AC026347.1-201ENST00000463255 474 ntTSL 3 BASIC3.77□□□□□ -1.81
MSH4O15457 FAM104B-204ENST00000472571 1109 ntAPPRIS ALT2 TSL 1 (best) BASIC3.77□□□□□ -1.81
MSH4O15457 AC106872.2-201ENST00000494303 480 ntBASIC3.77□□□□□ -1.81
MSH4O15457 AC020893.1-201ENST00000502452 580 ntBASIC3.77□□□□□ -1.81
MSH4O15457 MTND3P24-201ENST00000506306 329 ntBASIC3.77□□□□□ -1.81
MSH4O15457 RFESD-208ENST00000513950 464 ntTSL 5 BASIC3.77□□□□□ -1.81
MSH4O15457 RN7SKP283-201ENST00000517197 270 ntBASIC3.77□□□□□ -1.81
MSH4O15457 AC018616.1-201ENST00000524085 546 ntTSL 5 BASIC3.77□□□□□ -1.81
MSH4O15457 AP002768.1-201ENST00000526741 320 ntTSL 3 BASIC3.77□□□□□ -1.81
MSH4O15457 AC092851.1-201ENST00000535964 478 ntBASIC3.77□□□□□ -1.81
MSH4O15457 LINC01405-202ENST00000547607 674 ntTSL 3 BASIC3.77□□□□□ -1.81
MSH4O15457 AC016526.2-201ENST00000554225 520 ntTSL 3 BASIC3.77□□□□□ -1.81
MSH4O15457 AL161713.1-201ENST00000555538 145 ntBASIC3.77□□□□□ -1.81
MSH4O15457 FOPNL-204ENST00000573396 735 ntTSL 3 BASIC3.77□□□□□ -1.81
MSH4O15457 AC002546.2-201ENST00000585537 584 ntTSL 3 BASIC3.77□□□□□ -1.81
MSH4O15457 AC015911.5-201ENST00000587076 451 ntBASIC3.77□□□□□ -1.81
MSH4O15457 AC012254.4-201ENST00000588843 273 ntBASIC3.77□□□□□ -1.81
MSH4O15457 MIR8058-201ENST00000615737 89 ntBASIC3.77□□□□□ -1.81
MSH4O15457 AC243756.2-201ENST00000618406 463 ntBASIC3.77□□□□□ -1.81
MSH4O15457 TTN-AS1-267ENST00000628826 662 ntTSL 5 BASIC3.77□□□□□ -1.81
MSH4O15457 CAPZA2-215ENST00000639546 129 ntTSL 5 BASIC3.77□□□□□ -1.81
MSH4O15457 SYNE2-202ENST00000344113 21777 ntAPPRIS ALT2 TSL 1 (best) BASIC3.77□□□□□ -1.81
MSH4O15457 AL589745.1-201ENST00000421190 3336 ntTSL 5 BASIC3.77□□□□□ -1.81
MSH4O15457 ADAM5-201ENST00000359790 1663 ntTSL 1 (best) BASIC3.77□□□□□ -1.81
MSH4O15457 CNTN6-201ENST00000350110 3814 ntAPPRIS P1 TSL 1 (best) BASIC3.77□□□□□ -1.81
MSH4O15457 USP26-201ENST00000370832 3642 ntAPPRIS P1 BASIC3.76□□□□□ -1.81
MSH4O15457 TARID-205ENST00000607033 2960 ntTSL 1 (best) BASIC3.76□□□□□ -1.81
MSH4O15457 SYT14-208ENST00000637265 13567 ntTSL 5 BASIC3.76□□□□□ -1.81
MSH4O15457 Z83843.1-201ENST00000604070 3685 ntBASIC3.76□□□□□ -1.81
MSH4O15457 TMEM71-202ENST00000377901 1861 ntAPPRIS ALT2 TSL 1 (best) BASIC3.76□□□□□ -1.81
MSH4O15457 ATP2B1-202ENST00000359142 6977 ntTSL 5 BASIC3.76□□□□□ -1.81
MSH4O15457 RNU6-543P-201ENST00000362576 108 ntBASIC3.76□□□□□ -1.81
MSH4O15457 RNA5SP391-201ENST00000363456 119 ntBASIC3.76□□□□□ -1.81
MSH4O15457 Y_RNA.333-201ENST00000365274 102 ntBASIC3.76□□□□□ -1.81
MSH4O15457 DEFB110-201ENST00000371148 384 ntAPPRIS P3 TSL 1 (best) BASIC3.76□□□□□ -1.81
MSH4O15457 SYCP3-202ENST00000392924 845 ntAPPRIS P1 TSL 1 (best) BASIC3.76□□□□□ -1.81
MSH4O15457 HNRNPDP2-201ENST00000406475 478 ntBASIC3.76□□□□□ -1.81
MSH4O15457 RNA5SP120-201ENST00000410900 112 ntBASIC3.76□□□□□ -1.81
MSH4O15457 LINC00279-201ENST00000413486 473 ntTSL 3 BASIC3.76□□□□□ -1.81
MSH4O15457 EFCAB14-AS1-201ENST00000418985 491 ntTSL 3 BASIC3.76□□□□□ -1.81
MSH4O15457 MTATP6P11-201ENST00000428071 670 ntBASIC3.76□□□□□ -1.81
MSH4O15457 AL445259.1-202ENST00000434768 379 ntTSL 3 BASIC3.76□□□□□ -1.81
MSH4O15457 AP000477.1-202ENST00000434859 847 ntTSL 3 BASIC3.76□□□□□ -1.81
MSH4O15457 AC105402.2-201ENST00000438503 358 ntBASIC3.76□□□□□ -1.81
MSH4O15457 ATP5C1P1-201ENST00000441945 895 ntBASIC3.76□□□□□ -1.81
MSH4O15457 AC068135.1-201ENST00000446164 246 ntBASIC3.76□□□□□ -1.81
MSH4O15457 RNF148-202ENST00000447240 839 ntTSL 2 BASIC3.76□□□□□ -1.81
MSH4O15457 AC005008.2-202ENST00000447776 439 ntTSL 3 BASIC3.76□□□□□ -1.81
MSH4O15457 AC074327.1-201ENST00000448017 540 ntTSL 2 BASIC3.76□□□□□ -1.81
MSH4O15457 AL020994.3-201ENST00000449126 274 ntTSL 3 BASIC3.76□□□□□ -1.81
MSH4O15457 BTF3P5-201ENST00000457252 467 ntBASIC3.76□□□□□ -1.81
MSH4O15457 RN7SL601P-201ENST00000471221 293 ntBASIC3.76□□□□□ -1.81
MSH4O15457 PDCD10-216ENST00000492396 814 ntTSL 5 BASIC3.76□□□□□ -1.81
MSH4O15457 HMGB1P21-201ENST00000502313 581 ntBASIC3.76□□□□□ -1.81
MSH4O15457 OR5H4P-201ENST00000510851 923 ntBASIC3.76□□□□□ -1.81
MSH4O15457 AC107934.2-201ENST00000518653 310 ntBASIC3.76□□□□□ -1.81
MSH4O15457 LINC01609-201ENST00000519506 424 ntTSL 3 BASIC3.76□□□□□ -1.81
MSH4O15457 AC022081.1-201ENST00000537327 433 ntTSL 2 BASIC3.76□□□□□ -1.81
MSH4O15457 AC009509.2-201ENST00000538640 429 ntTSL 2 BASIC3.76□□□□□ -1.81
MSH4O15457 SOX5-AS1-201ENST00000539583 573 ntTSL 4 BASIC3.76□□□□□ -1.81
MSH4O15457 UBE2NP1-201ENST00000545592 458 ntBASIC3.76□□□□□ -1.81
MSH4O15457 RPL21P12-201ENST00000559810 515 ntBASIC3.76□□□□□ -1.81
MSH4O15457 AC092120.1-201ENST00000562211 420 ntTSL 3 BASIC3.76□□□□□ -1.81
MSH4O15457 AC079148.1-201ENST00000565944 819 ntBASIC3.76□□□□□ -1.81
MSH4O15457 AP000919.1-202ENST00000581139 1264 ntBASIC3.76□□□□□ -1.81
MSH4O15457 AC067852.4-201ENST00000590314 478 ntBASIC3.76□□□□□ -1.81
MSH4O15457 AL031985.2-201ENST00000600955 480 ntBASIC3.76□□□□□ -1.81
MSH4O15457 NTAN1P1-201ENST00000603150 646 ntBASIC3.76□□□□□ -1.81
MSH4O15457 AL162713.1-201ENST00000604480 262 ntBASIC3.76□□□□□ -1.81
MSH4O15457 OR2BH1P-201ENST00000608850 864 ntBASIC3.76□□□□□ -1.81
MSH4O15457 AL159169.3-201ENST00000608871 561 ntBASIC3.76□□□□□ -1.81
MSH4O15457 AL354976.1-201ENST00000613843 387 ntBASIC3.76□□□□□ -1.81
MSH4O15457 uc_338.32-201ENST00000615087 172 ntBASIC3.76□□□□□ -1.81
MSH4O15457 AL356321.1-201ENST00000621360 228 ntBASIC3.76□□□□□ -1.81
MSH4O15457 AC104971.4-201ENST00000622763 249 ntTSL 5 BASIC3.76□□□□□ -1.81
Retrieved 100 of 98,524 protein–RNA pairs in 118.2 ms