Protein–RNA interactions for Protein: Q9UBQ0

VPS29, Vacuolar protein sorting-associated protein 29, humanhuman

Predictions only

Length 182 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29Q9UBQ0 U1.23-201ENST00000610293 146 ntBASIC3.11□□□□□ -1.91
VPS29Q9UBQ0 C8orf59-210ENST00000614462 734 ntTSL 1 (best) BASIC3.11□□□□□ -1.91
VPS29Q9UBQ0 RNU1-68P-201ENST00000615382 146 ntBASIC3.11□□□□□ -1.91
VPS29Q9UBQ0 AC011472.4-201ENST00000615848 491 ntBASIC3.11□□□□□ -1.91
VPS29Q9UBQ0 SMAD5-AS1_2.1-201ENST00000617906 131 ntBASIC3.11□□□□□ -1.91
VPS29Q9UBQ0 U1.39-201ENST00000621562 146 ntBASIC3.11□□□□□ -1.91
VPS29Q9UBQ0 AC034229.5-201ENST00000624258 185 ntBASIC3.11□□□□□ -1.91
VPS29Q9UBQ0 AC091903.1-201ENST00000624322 454 ntBASIC3.11□□□□□ -1.91
VPS29Q9UBQ0 LPP-220ENST00000617246 18220 ntAPPRIS P1 TSL 1 (best) BASIC3.11□□□□□ -1.91
VPS29Q9UBQ0 AL157700.1-201ENST00000561973 1432 ntBASIC3.1□□□□□ -1.91
VPS29Q9UBQ0 EVI2A-202ENST00000461237 1540 ntAPPRIS ALT2 TSL 4 BASIC3.1□□□□□ -1.91
VPS29Q9UBQ0 CEP85L-202ENST00000368488 7118 ntTSL 5 BASIC3.1□□□□□ -1.91
VPS29Q9UBQ0 TSHB-201ENST00000256592 537 ntAPPRIS P1 TSL 5 BASIC3.1□□□□□ -1.91
VPS29Q9UBQ0 SNORA62.3-201ENST00000365110 153 ntBASIC3.1□□□□□ -1.91
VPS29Q9UBQ0 PLG-203ENST00000366924 1166 ntTSL 1 (best) BASIC3.1□□□□□ -1.91
VPS29Q9UBQ0 AKAP14-202ENST00000371422 412 ntAPPRIS ALT2 TSL 1 (best) BASIC3.1□□□□□ -1.91
VPS29Q9UBQ0 DEFB116-201ENST00000400549 309 ntAPPRIS P1 TSL 1 (best) BASIC3.1□□□□□ -1.91
VPS29Q9UBQ0 RNA5SP293-201ENST00000410527 113 ntBASIC3.1□□□□□ -1.91
VPS29Q9UBQ0 XKRYP4-201ENST00000414395 483 ntBASIC3.1□□□□□ -1.91
VPS29Q9UBQ0 LINC02263-202ENST00000420701 597 ntTSL 5 BASIC3.1□□□□□ -1.91
VPS29Q9UBQ0 AC017002.2-201ENST00000426124 792 ntTSL 2 BASIC3.1□□□□□ -1.91
VPS29Q9UBQ0 AC091493.1-201ENST00000426218 411 ntTSL 3 BASIC3.1□□□□□ -1.91
VPS29Q9UBQ0 AC023347.2-201ENST00000433994 462 ntBASIC3.1□□□□□ -1.91
VPS29Q9UBQ0 AC005019.1-201ENST00000436455 431 ntBASIC3.1□□□□□ -1.91
VPS29Q9UBQ0 AL157827.1-201ENST00000447622 132 ntBASIC3.1□□□□□ -1.91
VPS29Q9UBQ0 XKRYP5-201ENST00000449659 483 ntBASIC3.1□□□□□ -1.91
VPS29Q9UBQ0 AL137001.1-201ENST00000450212 199 ntTSL 3 BASIC3.1□□□□□ -1.91
VPS29Q9UBQ0 AC091564.1-201ENST00000464563 479 ntBASIC3.1□□□□□ -1.91
VPS29Q9UBQ0 ST13P14-201ENST00000474095 734 ntBASIC3.1□□□□□ -1.91
VPS29Q9UBQ0 RPL23AP44-201ENST00000482216 473 ntBASIC3.1□□□□□ -1.91
VPS29Q9UBQ0 KCTD9P5-201ENST00000504141 1170 ntBASIC3.1□□□□□ -1.91
VPS29Q9UBQ0 AC090071.1-201ENST00000507713 644 ntBASIC3.1□□□□□ -1.91
VPS29Q9UBQ0 AC021146.7-201ENST00000509604 775 ntBASIC3.1□□□□□ -1.91
VPS29Q9UBQ0 TXNP6-201ENST00000510190 310 ntBASIC3.1□□□□□ -1.91
VPS29Q9UBQ0 AC099520.1-208ENST00000518276 472 ntTSL 3 BASIC3.1□□□□□ -1.91
VPS29Q9UBQ0 AC063947.1-201ENST00000549036 557 ntTSL 4 BASIC3.1□□□□□ -1.91
VPS29Q9UBQ0 AC091563.1-202ENST00000574086 522 ntTSL 5 BASIC3.1□□□□□ -1.91
VPS29Q9UBQ0 AC005828.3-201ENST00000583552 591 ntTSL 5 BASIC3.1□□□□□ -1.91
VPS29Q9UBQ0 AC010928.3-201ENST00000587712 541 ntBASIC3.1□□□□□ -1.91
VPS29Q9UBQ0 PPP3CB-AS1-206ENST00000595935 675 ntTSL 5 BASIC3.1□□□□□ -1.91
VPS29Q9UBQ0 AC009948.4-201ENST00000604692 675 ntBASIC3.1□□□□□ -1.91
VPS29Q9UBQ0 AL162591.3-201ENST00000607963 681 ntTSL 3 BASIC3.1□□□□□ -1.91
VPS29Q9UBQ0 AL591516.1-201ENST00000611326 274 ntBASIC3.1□□□□□ -1.91
VPS29Q9UBQ0 SNORA50A-202ENST00000629536 136 ntBASIC3.1□□□□□ -1.91
VPS29Q9UBQ0 TATDN1-221ENST00000630259 915 ntTSL 5 BASIC3.1□□□□□ -1.91
VPS29Q9UBQ0 AC007218.2-201ENST00000636913 179 ntTSL 5 BASIC3.1□□□□□ -1.91
VPS29Q9UBQ0 SYNE1-212ENST00000423061 27436 ntAPPRIS ALT2 TSL 1 (best) BASIC3.1□□□□□ -1.91
VPS29Q9UBQ0 FAM214A-216ENST00000619572 3548 ntAPPRIS P1 TSL 1 (best) BASIC3.1□□□□□ -1.91
VPS29Q9UBQ0 AL049781.1-201ENST00000623195 3585 ntBASIC3.1□□□□□ -1.91
VPS29Q9UBQ0 AC005183.1-201ENST00000603687 1979 ntBASIC3.1□□□□□ -1.91
VPS29Q9UBQ0 BCLAF3-202ENST00000379682 3217 ntAPPRIS ALT2 TSL 5 BASIC3.1□□□□□ -1.91
VPS29Q9UBQ0 TMPRSS11A-202ENST00000508048 3247 ntAPPRIS ALT2 TSL 1 (best) BASIC3.1□□□□□ -1.91
VPS29Q9UBQ0 MTND5P3-201ENST00000438536 1800 ntBASIC3.09□□□□□ -1.91
VPS29Q9UBQ0 PHF6-201ENST00000332070 4759 ntAPPRIS P2 TSL 1 (best) BASIC3.09□□□□□ -1.91
VPS29Q9UBQ0 FBXL13-204ENST00000436908 2577 ntTSL 5 BASIC3.09□□□□□ -1.91
VPS29Q9UBQ0 LRRC49-222ENST00000560158 1898 ntTSL 5 BASIC3.09□□□□□ -1.91
VPS29Q9UBQ0 SRP72P2-201ENST00000344851 1979 ntBASIC3.09□□□□□ -1.91
VPS29Q9UBQ0 ROCK1P1-203ENST00000608049 2457 ntTSL 1 (best) BASIC3.09□□□□□ -1.91
VPS29Q9UBQ0 GYPE-201ENST00000358615 1684 ntAPPRIS P1 TSL 1 (best) BASIC3.09□□□□□ -1.91
VPS29Q9UBQ0 AC110760.2-201ENST00000508031 2546 ntTSL 2 BASIC3.09□□□□□ -1.91
VPS29Q9UBQ0 RAD1P1-201ENST00000231383 813 ntBASIC3.09□□□□□ -1.91
VPS29Q9UBQ0 RFX3-203ENST00000381984 364 ntTSL 3 BASIC3.09□□□□□ -1.91
VPS29Q9UBQ0 MIR490-201ENST00000384865 128 ntBASIC3.09□□□□□ -1.91
VPS29Q9UBQ0 FABP12P1-201ENST00000401911 322 ntBASIC3.09□□□□□ -1.91
VPS29Q9UBQ0 HMGB3P23-201ENST00000414981 585 ntBASIC3.09□□□□□ -1.91
VPS29Q9UBQ0 RPS7P15-201ENST00000415804 584 ntBASIC3.09□□□□□ -1.91
VPS29Q9UBQ0 LINC02526-201ENST00000424162 419 ntTSL 2 BASIC3.09□□□□□ -1.91
VPS29Q9UBQ0 ISM1-AS1-201ENST00000431407 652 ntTSL 1 (best) BASIC3.09□□□□□ -1.91
VPS29Q9UBQ0 NEK4P1-201ENST00000433383 879 ntBASIC3.09□□□□□ -1.91
VPS29Q9UBQ0 ARL5AP2-201ENST00000444698 533 ntBASIC3.09□□□□□ -1.91
VPS29Q9UBQ0 C1DP3-201ENST00000455013 423 ntBASIC3.09□□□□□ -1.91
VPS29Q9UBQ0 AL450344.1-201ENST00000456018 639 ntTSL 2 BASIC3.09□□□□□ -1.91
VPS29Q9UBQ0 RPL21P10-201ENST00000463521 490 ntBASIC3.09□□□□□ -1.91
VPS29Q9UBQ0 CSN1S1-203ENST00000507763 597 ntAPPRIS ALT2 TSL 5 BASIC3.09□□□□□ -1.91
VPS29Q9UBQ0 AC010285.3-201ENST00000511668 676 ntBASIC3.09□□□□□ -1.91
VPS29Q9UBQ0 RNU4-60P-201ENST00000517239 135 ntBASIC3.09□□□□□ -1.91
VPS29Q9UBQ0 AP001207.2-201ENST00000519490 539 ntBASIC3.09□□□□□ -1.91
VPS29Q9UBQ0 AC011611.1-201ENST00000552179 197 ntBASIC3.09□□□□□ -1.91
VPS29Q9UBQ0 AC010511.1-202ENST00000590229 573 ntTSL 4 BASIC3.09□□□□□ -1.91
VPS29Q9UBQ0 PCNAP1-202ENST00000595299 752 ntBASIC3.09□□□□□ -1.91
VPS29Q9UBQ0 AL109618.2-201ENST00000605527 211 ntBASIC3.09□□□□□ -1.91
VPS29Q9UBQ0 AC005021.1-201ENST00000608730 355 ntBASIC3.09□□□□□ -1.91
VPS29Q9UBQ0 AL590410.1-201ENST00000617925 333 ntBASIC3.09□□□□□ -1.91
VPS29Q9UBQ0 AC022079.2-201ENST00000619739 566 ntBASIC3.09□□□□□ -1.91
VPS29Q9UBQ0 AC019080.5-201ENST00000624891 757 ntBASIC3.09□□□□□ -1.91
VPS29Q9UBQ0 TTN-AS1-263ENST00000627527 784 ntTSL 5 BASIC3.09□□□□□ -1.91
VPS29Q9UBQ0 TEX41-300ENST00000631048 69 ntTSL 5 BASIC3.09□□□□□ -1.91
VPS29Q9UBQ0 CHD9-213ENST00000564845 11504 ntAPPRIS P1 TSL 1 (best) BASIC3.09□□□□□ -1.91
VPS29Q9UBQ0 ELL2P4-201ENST00000446870 1376 ntBASIC3.09□□□□□ -1.92
VPS29Q9UBQ0 SEMA3D-201ENST00000284136 6265 ntAPPRIS P1 TSL 5 BASIC3.09□□□□□ -1.92
VPS29Q9UBQ0 DDX60L-207ENST00000505890 4568 ntTSL 2 BASIC3.09□□□□□ -1.92
VPS29Q9UBQ0 PHF3-202ENST00000393387 6947 ntAPPRIS P1 TSL 1 (best) BASIC3.08□□□□□ -1.92
VPS29Q9UBQ0 OFD1P6Y-201ENST00000432335 1637 ntTSL 2 BASIC3.08□□□□□ -1.92
VPS29Q9UBQ0 TTTY9B-201ENST00000433794 1637 ntTSL 2 BASIC3.08□□□□□ -1.92
VPS29Q9UBQ0 LINC01021-204ENST00000512067 1610 ntTSL 1 (best) BASIC3.08□□□□□ -1.92
VPS29Q9UBQ0 RAD51AP1-201ENST00000228843 2163 ntAPPRIS ALT2 TSL 1 (best) BASIC3.08□□□□□ -1.92
VPS29Q9UBQ0 PHF6-205ENST00000625464 4434 ntAPPRIS ALT1 TSL 5 BASIC3.08□□□□□ -1.92
VPS29Q9UBQ0 MGST1-201ENST00000010404 901 ntAPPRIS P1 TSL 5 BASIC3.08□□□□□ -1.92
VPS29Q9UBQ0 GLIPR1L1-201ENST00000312442 1132 ntAPPRIS P3 TSL 1 (best) BASIC3.08□□□□□ -1.92
VPS29Q9UBQ0 RNU1-33P-201ENST00000364249 162 ntBASIC3.08□□□□□ -1.92
Retrieved 100 of 98,524 protein–RNA pairs in 115.8 ms