Protein–RNA interactions for Protein: Q9BQI4

CCDC3, Coiled-coil domain-containing protein 3, humanhuman

Predictions only

Length 270 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC3Q9BQI4 AL133480.1-201ENST00000411561 638 ntTSL 2 BASIC3.92□□□□□ -1.78
CCDC3Q9BQI4 RPS3AP25-201ENST00000411660 793 ntBASIC3.92□□□□□ -1.78
CCDC3Q9BQI4 PRELID3BP11-201ENST00000414230 479 ntBASIC3.92□□□□□ -1.78
CCDC3Q9BQI4 LINC01676-201ENST00000420901 410 ntTSL 3 BASIC3.92□□□□□ -1.78
CCDC3Q9BQI4 AP003025.1-201ENST00000421650 149 ntTSL 1 (best) BASIC3.92□□□□□ -1.78
CCDC3Q9BQI4 AP001599.1-201ENST00000426771 361 ntTSL 3 BASIC3.92□□□□□ -1.78
CCDC3Q9BQI4 AL513175.1-201ENST00000431492 780 ntBASIC3.92□□□□□ -1.78
CCDC3Q9BQI4 NANOGP2-201ENST00000435391 727 ntBASIC3.92□□□□□ -1.78
CCDC3Q9BQI4 TBCAP1-201ENST00000436520 327 ntBASIC3.92□□□□□ -1.78
CCDC3Q9BQI4 AC008278.2-201ENST00000438178 409 ntTSL 3 BASIC3.92□□□□□ -1.78
CCDC3Q9BQI4 EEF1A1P39-201ENST00000440791 250 ntBASIC3.92□□□□□ -1.78
CCDC3Q9BQI4 AC024597.1-201ENST00000442753 706 ntTSL 5 BASIC3.92□□□□□ -1.78
CCDC3Q9BQI4 IGKV3D-7-201ENST00000443397 384 ntAPPRIS P1 BASIC3.92□□□□□ -1.78
CCDC3Q9BQI4 HMGB1P16-201ENST00000447155 540 ntBASIC3.92□□□□□ -1.78
CCDC3Q9BQI4 ARL13A-202ENST00000450049 1102 ntAPPRIS P1 TSL 5 BASIC3.92□□□□□ -1.78
CCDC3Q9BQI4 AC099794.1-201ENST00000450811 447 ntTSL 3 BASIC3.92□□□□□ -1.78
CCDC3Q9BQI4 PTGES3P5-201ENST00000455109 434 ntBASIC3.92□□□□□ -1.78
CCDC3Q9BQI4 AL139099.1-201ENST00000497398 403 ntBASIC3.92□□□□□ -1.78
CCDC3Q9BQI4 EIF4E-208ENST00000505992 898 ntTSL 5 BASIC3.92□□□□□ -1.78
CCDC3Q9BQI4 AC114322.1-201ENST00000506771 926 ntBASIC3.92□□□□□ -1.78
CCDC3Q9BQI4 AC104393.1-201ENST00000517495 255 ntTSL 3 BASIC3.92□□□□□ -1.78
CCDC3Q9BQI4 AC018541.1-202ENST00000518687 584 ntTSL 4 BASIC3.92□□□□□ -1.78
CCDC3Q9BQI4 AC090150.2-201ENST00000521869 815 ntTSL 3 BASIC3.92□□□□□ -1.78
CCDC3Q9BQI4 ZFAND1-217ENST00000521895 885 ntTSL 3 BASIC3.92□□□□□ -1.78
CCDC3Q9BQI4 AP001207.1-201ENST00000524051 481 ntBASIC3.92□□□□□ -1.78
CCDC3Q9BQI4 AC018616.1-201ENST00000524085 546 ntTSL 5 BASIC3.92□□□□□ -1.78
CCDC3Q9BQI4 AP002812.3-201ENST00000527012 551 ntTSL 5 BASIC3.92□□□□□ -1.78
CCDC3Q9BQI4 AC118942.1-202ENST00000529081 578 ntTSL 5 BASIC3.92□□□□□ -1.78
CCDC3Q9BQI4 AP003969.1-201ENST00000531846 400 ntTSL 2 BASIC3.92□□□□□ -1.78
CCDC3Q9BQI4 AC091053.2-201ENST00000534169 537 ntTSL 4 BASIC3.92□□□□□ -1.78
CCDC3Q9BQI4 AC009509.2-201ENST00000538640 429 ntTSL 2 BASIC3.92□□□□□ -1.78
CCDC3Q9BQI4 SNHG1-219ENST00000542112 780 ntTSL 3 BASIC3.92□□□□□ -1.78
CCDC3Q9BQI4 LINC01479-202ENST00000546170 444 ntTSL 2 BASIC3.92□□□□□ -1.78
CCDC3Q9BQI4 MSMB-201ENST00000581478 386 ntTSL 1 (best) BASIC3.92□□□□□ -1.78
CCDC3Q9BQI4 AC022069.1-201ENST00000582910 658 ntBASIC3.92□□□□□ -1.78
CCDC3Q9BQI4 VN1R83P-201ENST00000595685 445 ntBASIC3.92□□□□□ -1.78
CCDC3Q9BQI4 AC008687.2-201ENST00000597865 520 ntBASIC3.92□□□□□ -1.78
CCDC3Q9BQI4 AC024220.1-201ENST00000603675 484 ntBASIC3.92□□□□□ -1.78
CCDC3Q9BQI4 AL450336.1-201ENST00000605180 586 ntBASIC3.92□□□□□ -1.78
CCDC3Q9BQI4 PRKCQ-AS1-208ENST00000608453 587 ntTSL 5 BASIC3.92□□□□□ -1.78
CCDC3Q9BQI4 AC092636.1-201ENST00000608609 415 ntTSL 2 BASIC3.92□□□□□ -1.78
CCDC3Q9BQI4 AC024257.5-201ENST00000612739 531 ntBASIC3.92□□□□□ -1.78
CCDC3Q9BQI4 RPL36A-210ENST00000614077 881 ntTSL 1 (best) BASIC3.92□□□□□ -1.78
CCDC3Q9BQI4 NEAT1-205ENST00000616315 483 ntTSL 2 BASIC3.92□□□□□ -1.78
CCDC3Q9BQI4 DLEU1_1.1-201ENST00000618107 190 ntBASIC3.92□□□□□ -1.78
CCDC3Q9BQI4 MAGI2-AS3-224ENST00000619135 205 ntTSL 5 BASIC3.92□□□□□ -1.78
CCDC3Q9BQI4 UGP2-231ENST00000627474 264 ntTSL 5 BASIC3.92□□□□□ -1.78
CCDC3Q9BQI4 AC074099.1-201ENST00000634100 679 ntTSL 5 BASIC3.92□□□□□ -1.78
CCDC3Q9BQI4 MANEA-201ENST00000358812 4575 ntAPPRIS P1 TSL 1 (best) BASIC3.92□□□□□ -1.78
CCDC3Q9BQI4 CDH9-201ENST00000231021 3079 ntAPPRIS P1 TSL 1 (best) BASIC3.92□□□□□ -1.78
CCDC3Q9BQI4 MCF2-201ENST00000338585 2826 ntAPPRIS ALT2 TSL 1 (best) BASIC3.92□□□□□ -1.78
CCDC3Q9BQI4 ATP13A3-203ENST00000439040 7720 ntAPPRIS P1 TSL 5 BASIC3.92□□□□□ -1.78
CCDC3Q9BQI4 SUCLA2P2-201ENST00000417269 1309 ntBASIC3.92□□□□□ -1.78
CCDC3Q9BQI4 CRISP3-201ENST00000263045 2170 ntAPPRIS P3 TSL 1 (best) BASIC3.92□□□□□ -1.78
CCDC3Q9BQI4 AP005901.5-201ENST00000545779 1796 ntBASIC3.91□□□□□ -1.78
CCDC3Q9BQI4 SMG1P1-206ENST00000431681 2913 ntTSL 2 BASIC3.91□□□□□ -1.78
CCDC3Q9BQI4 MTUS1-216ENST00000519263 4089 ntTSL 2 BASIC3.91□□□□□ -1.78
CCDC3Q9BQI4 ORC3-201ENST00000257789 2501 ntAPPRIS P3 TSL 1 (best) BASIC3.91□□□□□ -1.78
CCDC3Q9BQI4 ZRANB2-201ENST00000254821 2821 ntAPPRIS ALT2 TSL 1 (best) BASIC3.91□□□□□ -1.78
CCDC3Q9BQI4 LIPI-201ENST00000344577 1652 ntAPPRIS P2 TSL 1 (best) BASIC3.91□□□□□ -1.78
CCDC3Q9BQI4 MS4A1-201ENST00000345732 3331 ntAPPRIS P1 TSL 1 (best) BASIC3.91□□□□□ -1.78
CCDC3Q9BQI4 AL589745.1-201ENST00000421190 3336 ntTSL 5 BASIC3.91□□□□□ -1.78
CCDC3Q9BQI4 HTN1-201ENST00000246896 580 ntAPPRIS P1 TSL 1 (best) BASIC3.91□□□□□ -1.78
CCDC3Q9BQI4 5S_rRNA.1-201ENST00000364415 116 ntBASIC3.91□□□□□ -1.78
CCDC3Q9BQI4 snoZ40.1-201ENST00000364540 72 ntBASIC3.91□□□□□ -1.78
CCDC3Q9BQI4 RNU6-213P-201ENST00000384051 104 ntBASIC3.91□□□□□ -1.78
CCDC3Q9BQI4 SNORD116-23-201ENST00000384645 92 ntBASIC3.91□□□□□ -1.78
CCDC3Q9BQI4 STON1-GTF2A1L-202ENST00000394754 3824 ntAPPRIS P1 TSL 1 (best) BASIC3.91□□□□□ -1.78
CCDC3Q9BQI4 ERHP2-201ENST00000402323 299 ntBASIC3.91□□□□□ -1.78
CCDC3Q9BQI4 AL121978.1-201ENST00000402778 359 ntBASIC3.91□□□□□ -1.78
CCDC3Q9BQI4 AL603766.1-201ENST00000407763 664 ntBASIC3.91□□□□□ -1.78
CCDC3Q9BQI4 PGBD4P8-201ENST00000412993 562 ntBASIC3.91□□□□□ -1.78
CCDC3Q9BQI4 AL450992.3-201ENST00000413192 568 ntBASIC3.91□□□□□ -1.78
CCDC3Q9BQI4 LINC01423-201ENST00000414189 608 ntTSL 3 BASIC3.91□□□□□ -1.78
CCDC3Q9BQI4 AC093159.1-201ENST00000416845 424 ntTSL 3 BASIC3.91□□□□□ -1.78
CCDC3Q9BQI4 GCG-202ENST00000418842 1289 ntAPPRIS P1 TSL 1 (best) BASIC3.91□□□□□ -1.78
CCDC3Q9BQI4 AC009237.2-201ENST00000421358 284 ntBASIC3.91□□□□□ -1.78
CCDC3Q9BQI4 HIGD1AP12-201ENST00000427832 281 ntBASIC3.91□□□□□ -1.78
CCDC3Q9BQI4 AL358472.1-201ENST00000431295 329 ntBASIC3.91□□□□□ -1.78
CCDC3Q9BQI4 AC072062.1-204ENST00000437897 1132 ntTSL 5 BASIC3.91□□□□□ -1.78
CCDC3Q9BQI4 USP9YP22-201ENST00000438971 294 ntBASIC3.91□□□□□ -1.78
CCDC3Q9BQI4 Z73417.1-201ENST00000447373 778 ntBASIC3.91□□□□□ -1.78
CCDC3Q9BQI4 RPL23AP15-201ENST00000450202 459 ntBASIC3.91□□□□□ -1.78
CCDC3Q9BQI4 RPS11P1-201ENST00000451072 473 ntBASIC3.91□□□□□ -1.78
CCDC3Q9BQI4 PLCE1-AS2-205ENST00000453183 427 ntTSL 5 BASIC3.91□□□□□ -1.78
CCDC3Q9BQI4 PNPLA4P1-201ENST00000458328 305 ntBASIC3.91□□□□□ -1.78
CCDC3Q9BQI4 OR9M1P-201ENST00000459641 921 ntBASIC3.91□□□□□ -1.78
CCDC3Q9BQI4 AC107027.1-201ENST00000503006 575 ntTSL 2 BASIC3.91□□□□□ -1.78
CCDC3Q9BQI4 KLRA1P-201ENST00000503499 986 ntBASIC3.91□□□□□ -1.78
CCDC3Q9BQI4 BOLA3P3-201ENST00000505182 232 ntBASIC3.91□□□□□ -1.78
CCDC3Q9BQI4 RN7SKP265-201ENST00000516448 223 ntBASIC3.91□□□□□ -1.78
CCDC3Q9BQI4 AC067817.1-201ENST00000518535 356 ntTSL 2 BASIC3.91□□□□□ -1.78
CCDC3Q9BQI4 TRMT10BP1-201ENST00000519377 943 ntBASIC3.91□□□□□ -1.78
CCDC3Q9BQI4 AP003733.3-201ENST00000524942 788 ntTSL 2 BASIC3.91□□□□□ -1.78
CCDC3Q9BQI4 AP002989.1-201ENST00000533459 562 ntTSL 4 BASIC3.91□□□□□ -1.78
CCDC3Q9BQI4 KLRC2-204ENST00000536833 771 ntTSL 5 BASIC3.91□□□□□ -1.78
CCDC3Q9BQI4 AC073864.1-201ENST00000540161 562 ntTSL 4 BASIC3.91□□□□□ -1.78
CCDC3Q9BQI4 AC135001.1-201ENST00000544546 283 ntBASIC3.91□□□□□ -1.78
CCDC3Q9BQI4 AC026116.1-201ENST00000551729 474 ntTSL 3 BASIC3.91□□□□□ -1.78
CCDC3Q9BQI4 AC090695.1-201ENST00000561269 1222 ntBASIC3.91□□□□□ -1.78
Retrieved 100 of 98,524 protein–RNA pairs in 78.2 ms