Protein–RNA interactions for Protein: Q99801

NKX3-1, Homeobox protein Nkx-3.1, humanhuman

Predicted RBP Predictions only

Length 234 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-1Q99801 ADGRL2-210ENST00000370728 6302 ntAPPRIS ALT2 TSL 5 BASIC3.65□□□□□ -1.82
NKX3-1Q99801 DNAJC10-201ENST00000264065 20129 ntAPPRIS P1 TSL 1 (best) BASIC3.65□□□□□ -1.82
NKX3-1Q99801 RNU1-85P-201ENST00000364127 164 ntBASIC3.65□□□□□ -1.83
NKX3-1Q99801 AL158212.2-201ENST00000369391 460 ntTSL 3 BASIC3.65□□□□□ -1.83
NKX3-1Q99801 RNU6-921P-201ENST00000384361 107 ntBASIC3.65□□□□□ -1.83
NKX3-1Q99801 SNORA37-201ENST00000384504 129 ntBASIC3.65□□□□□ -1.83
NKX3-1Q99801 MIR3065-201ENST00000390137 79 ntBASIC3.65□□□□□ -1.83
NKX3-1Q99801 AF130351.1-202ENST00000400562 808 ntAPPRIS P5 TSL 3 BASIC3.65□□□□□ -1.83
NKX3-1Q99801 TMSB4XP8-201ENST00000402089 135 ntBASIC3.65□□□□□ -1.83
NKX3-1Q99801 MEIG1-202ENST00000407572 625 ntAPPRIS P1 TSL 2 BASIC3.65□□□□□ -1.83
NKX3-1Q99801 AC004987.3-201ENST00000413879 771 ntBASIC3.65□□□□□ -1.83
NKX3-1Q99801 TMSB4XP6-201ENST00000415187 135 ntBASIC3.65□□□□□ -1.83
NKX3-1Q99801 AL354733.1-203ENST00000417672 495 ntTSL 5 BASIC3.65□□□□□ -1.83
NKX3-1Q99801 AL078581.1-201ENST00000419134 340 ntTSL 5 BASIC3.65□□□□□ -1.83
NKX3-1Q99801 AL589946.1-201ENST00000421465 420 ntTSL 3 BASIC3.65□□□□□ -1.83
NKX3-1Q99801 TMSB4XP1-201ENST00000424567 135 ntBASIC3.65□□□□□ -1.83
NKX3-1Q99801 AC009313.1-201ENST00000425470 503 ntTSL 3 BASIC3.65□□□□□ -1.83
NKX3-1Q99801 OR4F13P-201ENST00000428478 931 ntBASIC3.65□□□□□ -1.83
NKX3-1Q99801 VDAC1P6-201ENST00000430062 855 ntBASIC3.65□□□□□ -1.83
NKX3-1Q99801 AL359378.1-201ENST00000439891 400 ntTSL 5 BASIC3.65□□□□□ -1.83
NKX3-1Q99801 CBX1P1-201ENST00000440184 427 ntBASIC3.65□□□□□ -1.83
NKX3-1Q99801 LINC00704-202ENST00000443994 418 ntTSL 2 BASIC3.65□□□□□ -1.83
NKX3-1Q99801 Z77249.1-201ENST00000444622 1175 ntBASIC3.65□□□□□ -1.83
NKX3-1Q99801 NDUFS5P3-201ENST00000450668 321 ntBASIC3.65□□□□□ -1.83
NKX3-1Q99801 RPL37P6-202ENST00000464216 403 ntBASIC3.65□□□□□ -1.83
NKX3-1Q99801 PDCD10-206ENST00000470131 1026 ntAPPRIS P1 TSL 5 BASIC3.65□□□□□ -1.83
NKX3-1Q99801 AC123768.1-201ENST00000486285 432 ntTSL 3 BASIC3.65□□□□□ -1.83
NKX3-1Q99801 LINC02161-201ENST00000503691 420 ntTSL 3 BASIC3.65□□□□□ -1.83
NKX3-1Q99801 BOLA3P3-201ENST00000505182 232 ntBASIC3.65□□□□□ -1.83
NKX3-1Q99801 AC079395.1-201ENST00000510981 262 ntBASIC3.65□□□□□ -1.83
NKX3-1Q99801 AC100782.1-201ENST00000520778 590 ntTSL 3 BASIC3.65□□□□□ -1.83
NKX3-1Q99801 UBTFL10-201ENST00000528532 562 ntBASIC3.65□□□□□ -1.83
NKX3-1Q99801 AP000619.3-201ENST00000535634 1127 ntBASIC3.65□□□□□ -1.83
NKX3-1Q99801 AC073912.2-201ENST00000542821 317 ntTSL 3 BASIC3.65□□□□□ -1.83
NKX3-1Q99801 PRH1-206ENST00000543626 710 ntAPPRIS P2 TSL 5 BASIC3.65□□□□□ -1.83
NKX3-1Q99801 AC090502.2-201ENST00000549267 280 ntBASIC3.65□□□□□ -1.83
NKX3-1Q99801 AC026888.1-201ENST00000553348 559 ntTSL 4 BASIC3.65□□□□□ -1.83
NKX3-1Q99801 AC084783.1-201ENST00000565846 910 ntBASIC3.65□□□□□ -1.83
NKX3-1Q99801 AL354943.1-201ENST00000572103 781 ntBASIC3.65□□□□□ -1.83
NKX3-1Q99801 TTN-AS1-213ENST00000584485 838 ntTSL 3 BASIC3.65□□□□□ -1.83
NKX3-1Q99801 NIFKP6-201ENST00000598115 845 ntBASIC3.65□□□□□ -1.83
NKX3-1Q99801 AC010320.2-202ENST00000599125 595 ntTSL 4 BASIC3.65□□□□□ -1.83
NKX3-1Q99801 AL390838.2-201ENST00000602394 274 ntBASIC3.65□□□□□ -1.83
NKX3-1Q99801 AC078899.5-201ENST00000612475 178 ntBASIC3.65□□□□□ -1.83
NKX3-1Q99801 AC022079.1-201ENST00000621546 602 ntBASIC3.65□□□□□ -1.83
NKX3-1Q99801 AC026634.1-201ENST00000634369 198 ntBASIC3.65□□□□□ -1.83
NKX3-1Q99801 MIR1322-201ENST00000638013 71 ntBASIC3.65□□□□□ -1.83
NKX3-1Q99801 AC117529.2-201ENST00000512159 2068 ntBASIC3.65□□□□□ -1.83
NKX3-1Q99801 LINC02471-203ENST00000641941 4752 ntBASIC3.65□□□□□ -1.83
NKX3-1Q99801 AL136964.1-201ENST00000622038 2990 ntBASIC3.65□□□□□ -1.83
NKX3-1Q99801 SLC10A5P1-201ENST00000379063 1306 ntBASIC3.65□□□□□ -1.83
NKX3-1Q99801 EMSY-210ENST00000529032 6848 ntAPPRIS P3 TSL 1 (best) BASIC3.65□□□□□ -1.83
NKX3-1Q99801 MAPK6PS3-201ENST00000403865 2162 ntBASIC3.65□□□□□ -1.83
NKX3-1Q99801 AC007529.1-201ENST00000418574 2178 ntBASIC3.65□□□□□ -1.83
NKX3-1Q99801 SLC6A15-203ENST00000450363 4229 ntTSL 1 (best) BASIC3.65□□□□□ -1.83
NKX3-1Q99801 WHAMMP2-201ENST00000512149 5482 ntTSL 5 BASIC3.64□□□□□ -1.83
NKX3-1Q99801 KIFAP3-202ENST00000367765 4111 ntTSL 2 BASIC3.64□□□□□ -1.83
NKX3-1Q99801 AKAP6-201ENST00000280979 15006 ntAPPRIS P1 TSL 1 (best) BASIC3.64□□□□□ -1.83
NKX3-1Q99801 THEMIS-204ENST00000537166 3830 ntAPPRIS ALT2 TSL 2 BASIC3.64□□□□□ -1.83
NKX3-1Q99801 UBE4A-201ENST00000252108 6103 ntAPPRIS ALT1 TSL 1 (best) BASIC3.64□□□□□ -1.83
NKX3-1Q99801 TPTE2-201ENST00000255310 1562 ntTSL 5 BASIC3.64□□□□□ -1.83
NKX3-1Q99801 RMDN2-207ENST00000417700 1426 ntTSL 1 (best) BASIC3.64□□□□□ -1.83
NKX3-1Q99801 LRRC63-203ENST00000595396 2327 ntAPPRIS P2 TSL 5 BASIC3.64□□□□□ -1.83
NKX3-1Q99801 ZSCAN26-204ENST00000614088 2321 ntTSL 3 BASIC3.64□□□□□ -1.83
NKX3-1Q99801 FAM3C2-201ENST00000312214 681 ntBASIC3.64□□□□□ -1.83
NKX3-1Q99801 TXNDC8-202ENST00000374510 455 ntAPPRIS P2 TSL 1 (best) BASIC3.64□□□□□ -1.83
NKX3-1Q99801 FABP12P1-201ENST00000401911 322 ntBASIC3.64□□□□□ -1.83
NKX3-1Q99801 AL049693.1-201ENST00000402760 611 ntBASIC3.64□□□□□ -1.83
NKX3-1Q99801 OTUD6B-202ENST00000404789 1089 ntTSL 1 (best) BASIC3.64□□□□□ -1.83
NKX3-1Q99801 ZNF603P-201ENST00000405613 487 ntBASIC3.64□□□□□ -1.83
NKX3-1Q99801 RNA5SP36-201ENST00000410197 133 ntBASIC3.64□□□□□ -1.83
NKX3-1Q99801 LINC01423-201ENST00000414189 608 ntTSL 3 BASIC3.64□□□□□ -1.83
NKX3-1Q99801 AC006960.1-201ENST00000419980 153 ntBASIC3.64□□□□□ -1.83
NKX3-1Q99801 RPL7P53-201ENST00000421245 739 ntBASIC3.64□□□□□ -1.83
NKX3-1Q99801 AL391219.1-201ENST00000422570 483 ntBASIC3.64□□□□□ -1.83
NKX3-1Q99801 AL139421.1-201ENST00000423010 169 ntBASIC3.64□□□□□ -1.83
NKX3-1Q99801 LINC01040-201ENST00000425048 666 ntTSL 2 BASIC3.64□□□□□ -1.83
NKX3-1Q99801 AL356361.2-201ENST00000430542 443 ntTSL 3 BASIC3.64□□□□□ -1.83
NKX3-1Q99801 B3GNT2P1-201ENST00000434960 952 ntBASIC3.64□□□□□ -1.83
NKX3-1Q99801 AC241584.1-201ENST00000438469 1241 ntBASIC3.64□□□□□ -1.83
NKX3-1Q99801 MTCYBP31-201ENST00000438855 1122 ntBASIC3.64□□□□□ -1.83
NKX3-1Q99801 ELOCP8-201ENST00000439309 332 ntBASIC3.64□□□□□ -1.83
NKX3-1Q99801 MTND3P1-201ENST00000441336 220 ntBASIC3.64□□□□□ -1.83
NKX3-1Q99801 ELOCP15-201ENST00000442090 332 ntBASIC3.64□□□□□ -1.83
NKX3-1Q99801 AL034418.1-201ENST00000448675 860 ntBASIC3.64□□□□□ -1.83
NKX3-1Q99801 AL158069.1-201ENST00000454131 455 ntTSL 5 BASIC3.64□□□□□ -1.83
NKX3-1Q99801 LINC00709-201ENST00000458168 494 ntTSL 2 BASIC3.64□□□□□ -1.83
NKX3-1Q99801 RN7SL385P-201ENST00000468873 276 ntBASIC3.64□□□□□ -1.83
NKX3-1Q99801 RN7SL585P-201ENST00000470538 280 ntBASIC3.64□□□□□ -1.83
NKX3-1Q99801 AC004263.1-201ENST00000479327 332 ntBASIC3.64□□□□□ -1.83
NKX3-1Q99801 OR4G11P-201ENST00000492842 939 ntBASIC3.64□□□□□ -1.83
NKX3-1Q99801 AC111000.4-201ENST00000504301 569 ntTSL 5 BASIC3.64□□□□□ -1.83
NKX3-1Q99801 AC093864.1-201ENST00000504555 745 ntTSL 5 BASIC3.64□□□□□ -1.83
NKX3-1Q99801 AC139783.2-201ENST00000504847 1145 ntBASIC3.64□□□□□ -1.83
NKX3-1Q99801 WBP1LP4-201ENST00000505043 344 ntBASIC3.64□□□□□ -1.83
NKX3-1Q99801 AC017037.1-201ENST00000508460 471 ntBASIC3.64□□□□□ -1.83
NKX3-1Q99801 MTCYBP37-201ENST00000510642 1133 ntBASIC3.64□□□□□ -1.83
NKX3-1Q99801 HNRNPKP5-201ENST00000515300 253 ntBASIC3.64□□□□□ -1.83
NKX3-1Q99801 RNU6-1261P-201ENST00000517194 104 ntBASIC3.64□□□□□ -1.83
NKX3-1Q99801 AC108515.1-201ENST00000517407 525 ntTSL 3 BASIC3.64□□□□□ -1.83
Retrieved 100 of 98,524 protein–RNA pairs in 109.1 ms