Protein–RNA interactions for Protein: Q96RL7

VPS13A, Vacuolar protein sorting-associated protein 13A, humanhuman

Predictions only

Length 3,174 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13AQ96RL7 ZNF28-203ENST00000438150 5171 ntTSL 2 BASIC2.81□□□□□ -1.96
VPS13AQ96RL7 IL15-204ENST00000477265 6026 ntTSL 1 (best) BASIC2.81□□□□□ -1.96
VPS13AQ96RL7 PNISR-201ENST00000369239 5112 ntAPPRIS P1 TSL 1 (best) BASIC2.81□□□□□ -1.96
VPS13AQ96RL7 PHACTR2-207ENST00000427704 9531 ntAPPRIS ALT2 TSL 1 (best) BASIC2.81□□□□□ -1.96
VPS13AQ96RL7 C1orf100-202ENST00000366537 483 ntTSL 1 (best) BASIC2.81□□□□□ -1.96
VPS13AQ96RL7 MTND2P11-201ENST00000423638 648 ntBASIC2.81□□□□□ -1.96
VPS13AQ96RL7 AC007879.3-202ENST00000448786 823 ntTSL 1 (best) BASIC2.81□□□□□ -1.96
VPS13AQ96RL7 SETP4-201ENST00000455717 868 ntBASIC2.81□□□□□ -1.96
VPS13AQ96RL7 BTF3L4P4-201ENST00000506381 449 ntBASIC2.81□□□□□ -1.96
VPS13AQ96RL7 AP002768.1-201ENST00000526741 320 ntTSL 3 BASIC2.81□□□□□ -1.96
VPS13AQ96RL7 AP001646.1-201ENST00000527936 915 ntBASIC2.81□□□□□ -1.96
VPS13AQ96RL7 AP000867.2-201ENST00000532468 320 ntBASIC2.81□□□□□ -1.96
VPS13AQ96RL7 AL161751.1-201ENST00000555636 1044 ntTSL 5 BASIC2.81□□□□□ -1.96
VPS13AQ96RL7 AC138627.1-204ENST00000641894 765 ntBASIC2.81□□□□□ -1.96
VPS13AQ96RL7 FGF12-204ENST00000445105 5406 ntTSL 1 (best) BASIC2.81□□□□□ -1.96
VPS13AQ96RL7 ANK2-202ENST00000357077 14196 ntAPPRIS P3 TSL 1 (best) BASIC2.81□□□□□ -1.96
VPS13AQ96RL7 EMSY-210ENST00000529032 6848 ntAPPRIS P3 TSL 1 (best) BASIC2.81□□□□□ -1.96
VPS13AQ96RL7 MTND4P26-201ENST00000415971 1359 ntBASIC2.81□□□□□ -1.96
VPS13AQ96RL7 RFX3-212ENST00000617270 9253 ntAPPRIS P1 TSL 2 BASIC2.81□□□□□ -1.96
VPS13AQ96RL7 AC007403.1-201ENST00000427579 567 ntTSL 4 BASIC2.81□□□□□ -1.96
VPS13AQ96RL7 AL354936.1-201ENST00000441521 649 ntTSL 5 BASIC2.81□□□□□ -1.96
VPS13AQ96RL7 RN7SL93P-201ENST00000463035 293 ntBASIC2.81□□□□□ -1.96
VPS13AQ96RL7 AC010401.1-201ENST00000463867 348 ntBASIC2.81□□□□□ -1.96
VPS13AQ96RL7 AC098868.1-201ENST00000512628 624 ntTSL 2 BASIC2.81□□□□□ -1.96
VPS13AQ96RL7 AC024132.3-201ENST00000513616 649 ntTSL 5 BASIC2.81□□□□□ -1.96
VPS13AQ96RL7 LINC02448-201ENST00000548613 583 ntTSL 2 BASIC2.81□□□□□ -1.96
VPS13AQ96RL7 AC023034.1-202ENST00000558153 684 ntTSL 3 BASIC2.81□□□□□ -1.96
VPS13AQ96RL7 AC138207.5-201ENST00000579561 409 ntTSL 3 BASIC2.81□□□□□ -1.96
VPS13AQ96RL7 GABRA2-202ENST00000381620 2525 ntAPPRIS P1 TSL 1 (best) BASIC2.81□□□□□ -1.96
VPS13AQ96RL7 NPFFR2-203ENST00000358749 1559 ntAPPRIS P1 TSL 1 (best) BASIC2.81□□□□□ -1.96
VPS13AQ96RL7 STEAP2-205ENST00000394629 2261 ntTSL 1 (best) BASIC2.8□□□□□ -1.96
VPS13AQ96RL7 OR2X1P-201ENST00000421144 687 ntBASIC2.8□□□□□ -1.96
VPS13AQ96RL7 SYT14P1-201ENST00000481459 721 ntBASIC2.8□□□□□ -1.96
VPS13AQ96RL7 AC005921.1-201ENST00000510589 286 ntBASIC2.8□□□□□ -1.96
VPS13AQ96RL7 LINC02350-201ENST00000544419 480 ntTSL 3 BASIC2.8□□□□□ -1.96
VPS13AQ96RL7 ALG13-230ENST00000623189 458 ntTSL 3 BASIC2.8□□□□□ -1.96
VPS13AQ96RL7 AC073476.4-201ENST00000628409 72 ntBASIC2.8□□□□□ -1.96
VPS13AQ96RL7 PLCE1-202ENST00000371380 12024 ntAPPRIS P3 TSL 1 (best) BASIC2.8□□□□□ -1.96
VPS13AQ96RL7 FANCI-202ENST00000310775 4743 ntAPPRIS ALT2 TSL 1 (best) BASIC2.8□□□□□ -1.96
VPS13AQ96RL7 SKIL-203ENST00000426052 2757 ntTSL 2 BASIC2.8□□□□□ -1.96
VPS13AQ96RL7 PLS1-201ENST00000337777 3755 ntAPPRIS P1 TSL 1 (best) BASIC2.8□□□□□ -1.96
VPS13AQ96RL7 HSPA8P1-201ENST00000425843 1833 ntBASIC2.8□□□□□ -1.96
VPS13AQ96RL7 TENM1-201ENST00000371130 12875 ntAPPRIS P3 TSL 1 (best) BASIC2.8□□□□□ -1.96
VPS13AQ96RL7 SPAM1-202ENST00000340011 2349 ntAPPRIS P4 TSL 1 (best) BASIC2.8□□□□□ -1.96
VPS13AQ96RL7 RNA5SP99-201ENST00000364020 114 ntBASIC2.8□□□□□ -1.96
VPS13AQ96RL7 NPM1P24-201ENST00000428039 894 ntBASIC2.8□□□□□ -1.96
VPS13AQ96RL7 LINC01889-201ENST00000430692 668 ntTSL 5 BASIC2.8□□□□□ -1.96
VPS13AQ96RL7 RN7SKP210-201ENST00000459176 261 ntBASIC2.8□□□□□ -1.96
VPS13AQ96RL7 TRBV8-2-201ENST00000475637 270 ntBASIC2.8□□□□□ -1.96
VPS13AQ96RL7 AC090525.1-201ENST00000479116 478 ntBASIC2.8□□□□□ -1.96
VPS13AQ96RL7 AC022509.2-201ENST00000540392 699 ntTSL 3 BASIC2.8□□□□□ -1.96
VPS13AQ96RL7 AC092140.1-201ENST00000563090 549 ntTSL 3 BASIC2.8□□□□□ -1.96
VPS13AQ96RL7 LTN1-201ENST00000361371 7685 ntAPPRIS P1 TSL 1 (best) BASIC2.8□□□□□ -1.96
VPS13AQ96RL7 GLCE-201ENST00000261858 5037 ntAPPRIS P1 TSL 1 (best) BASIC2.8□□□□□ -1.96
VPS13AQ96RL7 AKAP11-201ENST00000025301 9920 ntAPPRIS P1 TSL 1 (best) BASIC2.8□□□□□ -1.96
VPS13AQ96RL7 SCN11A-203ENST00000456224 5262 ntAPPRIS ALT2 TSL 5 BASIC2.8□□□□□ -1.96
VPS13AQ96RL7 AC006148.1-201ENST00000484322 4310 ntTSL 1 (best) BASIC2.8□□□□□ -1.96
VPS13AQ96RL7 AL138827.1-201ENST00000402666 306 ntBASIC2.79□□□□□ -1.96
VPS13AQ96RL7 RPL12P18-201ENST00000437175 325 ntBASIC2.79□□□□□ -1.96
VPS13AQ96RL7 AC126121.2-201ENST00000486137 698 ntTSL 3 BASIC2.79□□□□□ -1.96
VPS13AQ96RL7 AC069499.1-201ENST00000489433 509 ntBASIC2.79□□□□□ -1.96
VPS13AQ96RL7 AP001636.2-201ENST00000525517 696 ntBASIC2.79□□□□□ -1.96
VPS13AQ96RL7 AC078814.3-201ENST00000553036 491 ntBASIC2.79□□□□□ -1.96
VPS13AQ96RL7 STEAP4-201ENST00000301959 2321 ntTSL 1 (best) BASIC2.79□□□□□ -1.96
VPS13AQ96RL7 MBNL1-220ENST00000493459 4205 ntTSL 1 (best) BASIC2.79□□□□□ -1.96
VPS13AQ96RL7 NCAPGP1-201ENST00000505112 1814 ntBASIC2.79□□□□□ -1.96
VPS13AQ96RL7 SCN1A-209ENST00000635750 8299 ntAPPRIS P3 TSL 5 BASIC2.79□□□□□ -1.96
VPS13AQ96RL7 UACA-202ENST00000379983 4859 ntAPPRIS ALT2 TSL 5 BASIC2.79□□□□□ -1.96
VPS13AQ96RL7 MPHOSPH9-220ENST00000606320 6351 ntAPPRIS P2 TSL 5 BASIC2.79□□□□□ -1.96
VPS13AQ96RL7 HMMR-202ENST00000358715 2988 ntAPPRIS P4 TSL 1 (best) BASIC2.79□□□□□ -1.96
VPS13AQ96RL7 CNTN6-201ENST00000350110 3814 ntAPPRIS P1 TSL 1 (best) BASIC2.79□□□□□ -1.96
VPS13AQ96RL7 MIR592-201ENST00000384959 97 ntBASIC2.79□□□□□ -1.96
VPS13AQ96RL7 SNORA17.3-201ENST00000391159 129 ntBASIC2.79□□□□□ -1.96
VPS13AQ96RL7 AL356057.3-201ENST00000402607 340 ntBASIC2.79□□□□□ -1.96
VPS13AQ96RL7 UBXN7-204ENST00000428095 1173 ntTSL 1 (best) BASIC2.79□□□□□ -1.96
VPS13AQ96RL7 TRIM60P18-201ENST00000441518 828 ntBASIC2.79□□□□□ -1.96
VPS13AQ96RL7 MTCO3P16-201ENST00000454456 754 ntBASIC2.79□□□□□ -1.96
VPS13AQ96RL7 RPL36AP21-201ENST00000490372 323 ntBASIC2.79□□□□□ -1.96
VPS13AQ96RL7 MYL12AP1-201ENST00000518490 515 ntBASIC2.79□□□□□ -1.96
VPS13AQ96RL7 NBPF10-201ENST00000583866 13042 ntAPPRIS P1 TSL 5 BASIC2.79□□□□□ -1.96
VPS13AQ96RL7 PARPBP-201ENST00000327680 3014 ntAPPRIS P1 TSL 2 BASIC2.79□□□□□ -1.96
VPS13AQ96RL7 ERBB4-203ENST00000402597 11699 ntTSL 1 (best) BASIC2.79□□□□□ -1.96
VPS13AQ96RL7 LINC01350-201ENST00000436955 642 ntTSL 3 BASIC2.79□□□□□ -1.96
VPS13AQ96RL7 AC096576.3-201ENST00000505528 721 ntTSL 5 BASIC2.79□□□□□ -1.96
VPS13AQ96RL7 RPL7P20-201ENST00000520308 745 ntBASIC2.79□□□□□ -1.96
VPS13AQ96RL7 AL161804.1-201ENST00000555600 708 ntTSL 3 BASIC2.79□□□□□ -1.96
VPS13AQ96RL7 AC091965.1-202ENST00000607662 397 ntTSL 3 BASIC2.79□□□□□ -1.96
VPS13AQ96RL7 uc_338.32-201ENST00000615087 172 ntBASIC2.79□□□□□ -1.96
VPS13AQ96RL7 STON1-201ENST00000404752 5511 ntAPPRIS P1 TSL 1 (best) BASIC2.79□□□□□ -1.96
VPS13AQ96RL7 DNAH12-201ENST00000311202 1555 ntTSL 2 BASIC2.79□□□□□ -1.96
VPS13AQ96RL7 POSTN-209ENST00000541179 3214 ntAPPRIS ALT2 TSL 1 (best) BASIC2.78□□□□□ -1.96
VPS13AQ96RL7 FBXL13-204ENST00000436908 2577 ntTSL 5 BASIC2.78□□□□□ -1.96
VPS13AQ96RL7 RANBP6-201ENST00000259569 4576 ntAPPRIS P1 BASIC2.78□□□□□ -1.96
VPS13AQ96RL7 RNA5SP425-201ENST00000410336 112 ntBASIC2.78□□□□□ -1.96
VPS13AQ96RL7 DIAPH3-AS2-201ENST00000428656 367 ntTSL 3 BASIC2.78□□□□□ -1.96
VPS13AQ96RL7 AC023866.1-201ENST00000518064 579 ntTSL 4 BASIC2.78□□□□□ -1.96
VPS13AQ96RL7 CYP2C60P-201ENST00000566088 139 ntBASIC2.78□□□□□ -1.96
VPS13AQ96RL7 AL589765.7-201ENST00000601684 629 ntTSL 3 BASIC2.78□□□□□ -1.96
VPS13AQ96RL7 AL513314.2-204ENST00000619187 459 ntTSL 5 BASIC2.78□□□□□ -1.96
VPS13AQ96RL7 SLC35A1-205ENST00000622775 1206 ntTSL 5 BASIC2.78□□□□□ -1.96
Retrieved 100 of 98,524 protein–RNA pairs in 106 ms