Protein–RNA interactions for Protein: Q96MF4

CCDC140, Coiled-coil domain-containing protein 140, humanhuman

Predictions only

Length 163 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC140Q96MF4 BCLAF1P2-201ENST00000624956 2609 ntBASIC4.74□□□□□ -1.65
CCDC140Q96MF4 FCHSD2-201ENST00000311172 4340 ntTSL 1 (best) BASIC4.73□□□□□ -1.65
CCDC140Q96MF4 TTC21B-201ENST00000243344 5482 ntAPPRIS P1 TSL 1 (best) BASIC4.73□□□□□ -1.65
CCDC140Q96MF4 ORC4-214ENST00000535373 6710 ntAPPRIS P1 TSL 5 BASIC4.73□□□□□ -1.65
CCDC140Q96MF4 GPAM-202ENST00000369425 5664 ntTSL 1 (best) BASIC4.73□□□□□ -1.65
CCDC140Q96MF4 EIF2AP4-201ENST00000424793 1781 ntBASIC4.73□□□□□ -1.65
CCDC140Q96MF4 BMPR2-201ENST00000374574 9683 ntTSL 2 BASIC4.73□□□□□ -1.65
CCDC140Q96MF4 ZNF227-201ENST00000313040 3043 ntAPPRIS P1 TSL 1 (best) BASIC4.73□□□□□ -1.65
CCDC140Q96MF4 AJ009632.2-208ENST00000635525 4123 ntTSL 5 BASIC4.73□□□□□ -1.65
CCDC140Q96MF4 ERC1-222ENST00000589028 9202 ntAPPRIS P1 TSL 1 (best) BASIC4.73□□□□□ -1.65
CCDC140Q96MF4 ARID4A-203ENST00000395168 4051 ntTSL 5 BASIC4.73□□□□□ -1.65
CCDC140Q96MF4 ZPLD1-201ENST00000306176 3619 ntTSL 1 (best) BASIC4.73□□□□□ -1.65
CCDC140Q96MF4 AC027575.3-201ENST00000583058 2747 ntBASIC4.73□□□□□ -1.65
CCDC140Q96MF4 ALKAL2-201ENST00000344414 449 ntTSL 3 BASIC4.73□□□□□ -1.65
CCDC140Q96MF4 SNORA21-201ENST00000362423 132 ntBASIC4.73□□□□□ -1.65
CCDC140Q96MF4 RNA5SP110-201ENST00000362638 115 ntBASIC4.73□□□□□ -1.65
CCDC140Q96MF4 S100A5-201ENST00000368717 506 ntAPPRIS P1 TSL 3 BASIC4.73□□□□□ -1.65
CCDC140Q96MF4 CARD16-202ENST00000375706 686 ntAPPRIS P1 TSL 1 (best) BASIC4.73□□□□□ -1.65
CCDC140Q96MF4 RNU6-946P-201ENST00000383878 107 ntBASIC4.73□□□□□ -1.65
CCDC140Q96MF4 Y_RNA.387-201ENST00000383918 102 ntBASIC4.73□□□□□ -1.65
CCDC140Q96MF4 TRAV26-1-201ENST00000390455 537 ntAPPRIS P1 BASIC4.73□□□□□ -1.65
CCDC140Q96MF4 ALDH7A1P4-201ENST00000412255 178 ntBASIC4.73□□□□□ -1.65
CCDC140Q96MF4 LINC00894-201ENST00000413076 403 ntTSL 3 BASIC4.73□□□□□ -1.65
CCDC140Q96MF4 GJA6P-201ENST00000415117 1042 ntBASIC4.73□□□□□ -1.65
CCDC140Q96MF4 AC133106.1-201ENST00000419029 397 ntTSL 3 BASIC4.73□□□□□ -1.65
CCDC140Q96MF4 LINC00310-202ENST00000419881 910 ntTSL 5 BASIC4.73□□□□□ -1.65
CCDC140Q96MF4 AF228730.4-201ENST00000421457 183 ntBASIC4.73□□□□□ -1.65
CCDC140Q96MF4 AC130360.1-201ENST00000425489 1117 ntBASIC4.73□□□□□ -1.65
CCDC140Q96MF4 MIR646HG-202ENST00000426753 651 ntTSL 2 BASIC4.73□□□□□ -1.65
CCDC140Q96MF4 NCOA7-AS1-201ENST00000429007 501 ntTSL 3 BASIC4.73□□□□□ -1.65
CCDC140Q96MF4 RPSAP65-201ENST00000429660 595 ntBASIC4.73□□□□□ -1.65
CCDC140Q96MF4 AC236972.2-201ENST00000434979 310 ntBASIC4.73□□□□□ -1.65
CCDC140Q96MF4 GAPDHP27-201ENST00000447427 1020 ntBASIC4.73□□□□□ -1.65
CCDC140Q96MF4 RPS11P1-201ENST00000451072 473 ntBASIC4.73□□□□□ -1.65
CCDC140Q96MF4 AC002553.3-201ENST00000453002 341 ntBASIC4.73□□□□□ -1.65
CCDC140Q96MF4 MEMO1P4-201ENST00000453590 386 ntBASIC4.73□□□□□ -1.65
CCDC140Q96MF4 AC079896.1-201ENST00000455845 488 ntTSL 3 BASIC4.73□□□□□ -1.65
CCDC140Q96MF4 AL445687.2-201ENST00000458156 728 ntBASIC4.73□□□□□ -1.65
CCDC140Q96MF4 AC114728.1-201ENST00000488289 483 ntBASIC4.73□□□□□ -1.65
CCDC140Q96MF4 AL049874.2-201ENST00000492636 288 ntBASIC4.73□□□□□ -1.65
CCDC140Q96MF4 ENSA-211ENST00000503345 793 ntTSL 3 BASIC4.73□□□□□ -1.65
CCDC140Q96MF4 CCDC34P1-201ENST00000507441 517 ntBASIC4.73□□□□□ -1.65
CCDC140Q96MF4 MOCS2-206ENST00000510818 1251 ntTSL 5 BASIC4.73□□□□□ -1.65
CCDC140Q96MF4 LINC01598-206ENST00000513381 499 ntTSL 4 BASIC4.73□□□□□ -1.65
CCDC140Q96MF4 AC100870.1-201ENST00000522035 505 ntBASIC4.73□□□□□ -1.65
CCDC140Q96MF4 MRPS16P1-201ENST00000523462 412 ntBASIC4.73□□□□□ -1.65
CCDC140Q96MF4 AC084125.1-201ENST00000525461 429 ntTSL 3 BASIC4.73□□□□□ -1.65
CCDC140Q96MF4 AC130365.2-201ENST00000525882 1201 ntBASIC4.73□□□□□ -1.65
CCDC140Q96MF4 AP000462.3-201ENST00000545593 330 ntTSL 5 BASIC4.73□□□□□ -1.65
CCDC140Q96MF4 ARL6IP1P1-201ENST00000545836 610 ntBASIC4.73□□□□□ -1.65
CCDC140Q96MF4 AC026765.1-201ENST00000547876 435 ntTSL 3 BASIC4.73□□□□□ -1.65
CCDC140Q96MF4 LINC01234-204ENST00000550905 589 ntTSL 3 BASIC4.73□□□□□ -1.65
CCDC140Q96MF4 BICD1-206ENST00000551086 423 ntTSL 3 BASIC4.73□□□□□ -1.65
CCDC140Q96MF4 AL163195.3-202ENST00000555283 578 ntAPPRIS P1 TSL 4 BASIC4.73□□□□□ -1.65
CCDC140Q96MF4 MRPS21P8-201ENST00000569196 235 ntBASIC4.73□□□□□ -1.65
CCDC140Q96MF4 AP006219.1-201ENST00000580258 472 ntTSL 3 BASIC4.73□□□□□ -1.65
CCDC140Q96MF4 AC005544.1-201ENST00000584277 460 ntTSL 3 BASIC4.73□□□□□ -1.65
CCDC140Q96MF4 CBLN2-208ENST00000584764 543 ntTSL 4 BASIC4.73□□□□□ -1.65
CCDC140Q96MF4 ZNF230-204ENST00000585632 579 ntTSL 2 BASIC4.73□□□□□ -1.65
CCDC140Q96MF4 AC011476.3-202ENST00000586845 553 ntTSL 3 BASIC4.73□□□□□ -1.65
CCDC140Q96MF4 AL589935.1-201ENST00000602418 488 ntTSL 4 BASIC4.73□□□□□ -1.65
CCDC140Q96MF4 AL670379.6-201ENST00000603753 252 ntBASIC4.73□□□□□ -1.65
CCDC140Q96MF4 AL670379.11-201ENST00000604059 253 ntBASIC4.73□□□□□ -1.65
CCDC140Q96MF4 AL022099.1-201ENST00000604551 712 ntBASIC4.73□□□□□ -1.65
CCDC140Q96MF4 AL670379.1-201ENST00000604752 252 ntBASIC4.73□□□□□ -1.65
CCDC140Q96MF4 IGHV3-29-201ENST00000604817 344 ntBASIC4.73□□□□□ -1.65
CCDC140Q96MF4 AL670379.5-201ENST00000605253 252 ntBASIC4.73□□□□□ -1.65
CCDC140Q96MF4 AL670379.12-201ENST00000605291 253 ntBASIC4.73□□□□□ -1.65
CCDC140Q96MF4 AL670379.8-201ENST00000605353 252 ntBASIC4.73□□□□□ -1.65
CCDC140Q96MF4 AL158032.1-201ENST00000605401 106 ntBASIC4.73□□□□□ -1.65
CCDC140Q96MF4 AL670379.7-201ENST00000605823 252 ntBASIC4.73□□□□□ -1.65
CCDC140Q96MF4 AL359091.2-201ENST00000609303 556 ntBASIC4.73□□□□□ -1.65
CCDC140Q96MF4 RFPL4AP6-201ENST00000616792 846 ntBASIC4.73□□□□□ -1.65
CCDC140Q96MF4 CRB1-203ENST00000367400 4932 ntAPPRIS P1 TSL 1 (best) BASIC4.73□□□□□ -1.65
CCDC140Q96MF4 ENKUR-201ENST00000331161 3382 ntAPPRIS P2 TSL 1 (best) BASIC4.73□□□□□ -1.65
CCDC140Q96MF4 CLEC4D-201ENST00000299665 1936 ntAPPRIS P1 TSL 1 (best) BASIC4.73□□□□□ -1.65
CCDC140Q96MF4 AL731532.1-201ENST00000623972 4236 ntBASIC4.73□□□□□ -1.65
CCDC140Q96MF4 RIPK1-202ENST00000380409 3864 ntAPPRIS P1 TSL 1 (best) BASIC4.73□□□□□ -1.65
CCDC140Q96MF4 ERAP2-202ENST00000437043 5705 ntAPPRIS P1 TSL 1 (best) BASIC4.73□□□□□ -1.65
CCDC140Q96MF4 SGIP1-201ENST00000237247 3997 ntAPPRIS ALT2 TSL 5 BASIC4.73□□□□□ -1.65
CCDC140Q96MF4 AC109446.4-201ENST00000623235 2755 ntBASIC4.73□□□□□ -1.65
CCDC140Q96MF4 MEIOB-201ENST00000325962 1694 ntAPPRIS P1 TSL 5 BASIC4.73□□□□□ -1.65
CCDC140Q96MF4 SKP1-209ENST00000522552 1683 ntAPPRIS ALT1 TSL 1 (best) BASIC4.73□□□□□ -1.65
CCDC140Q96MF4 TRPM6-202ENST00000360774 8425 ntTSL 1 (best) BASIC4.73□□□□□ -1.65
CCDC140Q96MF4 PDE4D-216ENST00000507116 3350 ntAPPRIS P1 TSL 1 (best) BASIC4.73□□□□□ -1.65
CCDC140Q96MF4 AL589740.1-207ENST00000607823 1962 ntTSL 5 BASIC4.73□□□□□ -1.65
CCDC140Q96MF4 ATXN3L-201ENST00000380622 2164 ntAPPRIS P1 BASIC4.72□□□□□ -1.65
CCDC140Q96MF4 TRMT13-202ENST00000370141 3129 ntAPPRIS P1 TSL 1 (best) BASIC4.72□□□□□ -1.65
CCDC140Q96MF4 POM121L2-202ENST00000444565 3108 ntAPPRIS P2 BASIC4.72□□□□□ -1.65
CCDC140Q96MF4 CD53-201ENST00000271324 1505 ntAPPRIS P1 TSL 1 (best) BASIC4.72□□□□□ -1.65
CCDC140Q96MF4 AP001350.1-201ENST00000601906 1524 ntBASIC4.72□□□□□ -1.65
CCDC140Q96MF4 TCF4-284ENST00000637169 7553 ntTSL 5 BASIC4.72□□□□□ -1.65
CCDC140Q96MF4 RNF6-202ENST00000381570 3398 ntAPPRIS P1 TSL 1 (best) BASIC4.72□□□□□ -1.65
CCDC140Q96MF4 TECRL-201ENST00000381210 3573 ntAPPRIS P1 TSL 1 (best) BASIC4.72□□□□□ -1.65
CCDC140Q96MF4 FCHSD2-208ENST00000458644 2215 ntTSL 2 BASIC4.72□□□□□ -1.65
CCDC140Q96MF4 IKZF2-210ENST00000451136 9344 ntTSL 5 BASIC4.72□□□□□ -1.65
CCDC140Q96MF4 CEP83-202ENST00000397807 2737 ntTSL 5 BASIC4.72□□□□□ -1.65
CCDC140Q96MF4 NOS1-201ENST00000317775 12158 ntAPPRIS P1 TSL 1 (best) BASIC4.72□□□□□ -1.65
CCDC140Q96MF4 DEFB107A-201ENST00000335021 389 ntAPPRIS P1 TSL 1 (best) BASIC4.72□□□□□ -1.65
CCDC140Q96MF4 DEFB107B-201ENST00000355602 389 ntAPPRIS P1 TSL 1 (best) BASIC4.72□□□□□ -1.65
Retrieved 100 of 98,524 protein–RNA pairs in 117.6 ms