Protein–RNA interactions for Protein: P43489

TNFRSF4, Tumor necrosis factor receptor superfamily member 4, humanhuman

Predictions only

Length 277 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TNFRSF4P43489 SLC15A5-201ENST00000344941 2923 ntAPPRIS P1 TSL 5 BASIC3.81□□□□□ -1.8
TNFRSF4P43489 FGD4-211ENST00000531134 2924 ntTSL 2 BASIC3.81□□□□□ -1.8
TNFRSF4P43489 CRISP1-202ENST00000335847 1911 ntAPPRIS P1 TSL 1 (best) BASIC3.8□□□□□ -1.8
TNFRSF4P43489 THOC2-202ENST00000355725 4930 ntAPPRIS P1 TSL 5 BASIC3.8□□□□□ -1.8
TNFRSF4P43489 PTMAP5-201ENST00000393073 333 ntBASIC3.8□□□□□ -1.8
TNFRSF4P43489 MTCO2P31-201ENST00000402702 684 ntBASIC3.8□□□□□ -1.8
TNFRSF4P43489 AC092638.1-201ENST00000411966 1275 ntBASIC3.8□□□□□ -1.8
TNFRSF4P43489 RPS7P15-201ENST00000415804 584 ntBASIC3.8□□□□□ -1.8
TNFRSF4P43489 AC092155.1-202ENST00000416111 932 ntTSL 1 (best) BASIC3.8□□□□□ -1.8
TNFRSF4P43489 CYCSP10-201ENST00000417973 294 ntBASIC3.8□□□□□ -1.8
TNFRSF4P43489 AC008280.1-201ENST00000418851 412 ntBASIC3.8□□□□□ -1.8
TNFRSF4P43489 AL031429.1-201ENST00000426775 749 ntTSL 2 BASIC3.8□□□□□ -1.8
TNFRSF4P43489 AL355303.1-201ENST00000428920 680 ntTSL 3 BASIC3.8□□□□□ -1.8
TNFRSF4P43489 OR51AB1P-201ENST00000429046 620 ntBASIC3.8□□□□□ -1.8
TNFRSF4P43489 SNORA71B-202ENST00000439232 272 ntBASIC3.8□□□□□ -1.8
TNFRSF4P43489 Z77249.1-201ENST00000444622 1175 ntBASIC3.8□□□□□ -1.8
TNFRSF4P43489 AC004160.1-211ENST00000445839 565 ntTSL 4 BASIC3.8□□□□□ -1.8
TNFRSF4P43489 RPL21P23-201ENST00000446654 460 ntBASIC3.8□□□□□ -1.8
TNFRSF4P43489 RPL29P29-201ENST00000448725 423 ntBASIC3.8□□□□□ -1.8
TNFRSF4P43489 ETV5-AS1-201ENST00000453370 560 ntTSL 4 BASIC3.8□□□□□ -1.8
TNFRSF4P43489 LINC01312-202ENST00000456347 813 ntTSL 1 (best) BASIC3.8□□□□□ -1.8
TNFRSF4P43489 snoU13.24-201ENST00000458998 104 ntBASIC3.8□□□□□ -1.8
TNFRSF4P43489 AC087879.1-201ENST00000474343 374 ntBASIC3.8□□□□□ -1.8
TNFRSF4P43489 AP000893.1-201ENST00000474462 794 ntBASIC3.8□□□□□ -1.8
TNFRSF4P43489 RAD51AP1P1-201ENST00000484195 1001 ntBASIC3.8□□□□□ -1.8
TNFRSF4P43489 MGAT4A-209ENST00000495056 683 ntTSL 2 BASIC3.8□□□□□ -1.8
TNFRSF4P43489 CAB39P1-201ENST00000502277 460 ntBASIC3.8□□□□□ -1.8
TNFRSF4P43489 AC093801.2-201ENST00000503966 1050 ntBASIC3.8□□□□□ -1.8
TNFRSF4P43489 AC026414.1-201ENST00000504046 698 ntBASIC3.8□□□□□ -1.8
TNFRSF4P43489 AC107398.2-201ENST00000508081 601 ntTSL 5 BASIC3.8□□□□□ -1.8
TNFRSF4P43489 AC087241.1-201ENST00000508615 429 ntTSL 5 BASIC3.8□□□□□ -1.8
TNFRSF4P43489 IGKV2-23-201ENST00000518729 323 ntBASIC3.8□□□□□ -1.8
TNFRSF4P43489 MTND5P21-201ENST00000531961 522 ntBASIC3.8□□□□□ -1.8
TNFRSF4P43489 OR8L1P-201ENST00000534005 955 ntBASIC3.8□□□□□ -1.8
TNFRSF4P43489 AC011773.3-201ENST00000546501 589 ntTSL 3 BASIC3.8□□□□□ -1.8
TNFRSF4P43489 AC009558.2-201ENST00000558258 396 ntTSL 2 BASIC3.8□□□□□ -1.8
TNFRSF4P43489 CMC2-208ENST00000564249 890 ntAPPRIS P1 TSL 5 BASIC3.8□□□□□ -1.8
TNFRSF4P43489 MIR3922-201ENST00000585192 84 ntBASIC3.8□□□□□ -1.8
TNFRSF4P43489 KLHL23-207ENST00000602521 630 ntTSL 3 BASIC3.8□□□□□ -1.8
TNFRSF4P43489 AL159169.3-201ENST00000608871 561 ntBASIC3.8□□□□□ -1.8
TNFRSF4P43489 AC005156.1-201ENST00000613371 573 ntBASIC3.8□□□□□ -1.8
TNFRSF4P43489 MIR7975-201ENST00000619350 68 ntBASIC3.8□□□□□ -1.8
TNFRSF4P43489 ZFAT-AS1_1.1-201ENST00000620907 79 ntBASIC3.8□□□□□ -1.8
TNFRSF4P43489 AC243312.2-201ENST00000623340 601 ntBASIC3.8□□□□□ -1.8
TNFRSF4P43489 LYRM2-211ENST00000626778 696 ntTSL 5 BASIC3.8□□□□□ -1.8
TNFRSF4P43489 PREPL-205ENST00000409411 4725 ntTSL 1 (best) BASIC3.8□□□□□ -1.8
TNFRSF4P43489 BBX-203ENST00000402543 3980 ntTSL 5 BASIC3.8□□□□□ -1.8
TNFRSF4P43489 CSRNP3-202ENST00000342316 11684 ntAPPRIS P1 TSL 1 (best) BASIC3.8□□□□□ -1.8
TNFRSF4P43489 MTCO1P12-201ENST00000414273 1543 ntBASIC3.8□□□□□ -1.8
TNFRSF4P43489 ZNF962P-201ENST00000443465 3140 ntBASIC3.79□□□□□ -1.8
TNFRSF4P43489 KIF15-203ENST00000425755 3460 ntTSL 5 BASIC3.79□□□□□ -1.8
TNFRSF4P43489 LINC02471-203ENST00000641941 4752 ntBASIC3.79□□□□□ -1.8
TNFRSF4P43489 OR10J6P-201ENST00000289731 930 ntBASIC3.79□□□□□ -1.8
TNFRSF4P43489 AC007685.1-201ENST00000329806 452 ntBASIC3.79□□□□□ -1.8
TNFRSF4P43489 QKI-202ENST00000361195 1063 ntTSL 1 (best) BASIC3.79□□□□□ -1.8
TNFRSF4P43489 RNU6-1243P-201ENST00000364028 107 ntBASIC3.79□□□□□ -1.8
TNFRSF4P43489 LZIC-201ENST00000377213 945 ntAPPRIS P1 TSL 1 (best) BASIC3.79□□□□□ -1.8
TNFRSF4P43489 RNA5SP424-201ENST00000390988 115 ntBASIC3.79□□□□□ -1.8
TNFRSF4P43489 RPL7P60-201ENST00000397636 735 ntBASIC3.79□□□□□ -1.8
TNFRSF4P43489 TMSB4XP8-201ENST00000402089 135 ntBASIC3.79□□□□□ -1.8
TNFRSF4P43489 AL162394.1-201ENST00000413271 419 ntTSL 2 BASIC3.79□□□□□ -1.8
TNFRSF4P43489 TMSB4XP6-201ENST00000415187 135 ntBASIC3.79□□□□□ -1.8
TNFRSF4P43489 FNDC1-IT1-201ENST00000419703 516 ntTSL 3 BASIC3.79□□□□□ -1.8
TNFRSF4P43489 TMSB4XP1-201ENST00000424567 135 ntBASIC3.79□□□□□ -1.8
TNFRSF4P43489 AC096638.2-201ENST00000434965 711 ntBASIC3.79□□□□□ -1.8
TNFRSF4P43489 HMGN3P1-201ENST00000453847 193 ntBASIC3.79□□□□□ -1.8
TNFRSF4P43489 AC146507.1-201ENST00000468335 354 ntBASIC3.79□□□□□ -1.8
TNFRSF4P43489 AC084198.1-201ENST00000477747 402 ntBASIC3.79□□□□□ -1.8
TNFRSF4P43489 AC091860.1-201ENST00000505723 432 ntBASIC3.79□□□□□ -1.8
TNFRSF4P43489 AC118282.2-201ENST00000508739 374 ntBASIC3.79□□□□□ -1.8
TNFRSF4P43489 PTGES3P3-201ENST00000511479 482 ntBASIC3.79□□□□□ -1.8
TNFRSF4P43489 AC010374.2-201ENST00000512933 535 ntBASIC3.79□□□□□ -1.8
TNFRSF4P43489 AC093755.1-201ENST00000512950 1023 ntBASIC3.79□□□□□ -1.8
TNFRSF4P43489 MIR100HG-213ENST00000531470 560 ntTSL 4 BASIC3.79□□□□□ -1.8
TNFRSF4P43489 AC073864.1-201ENST00000540161 562 ntTSL 4 BASIC3.79□□□□□ -1.8
TNFRSF4P43489 AC068768.1-204ENST00000544890 796 ntTSL 4 BASIC3.79□□□□□ -1.8
TNFRSF4P43489 AC027288.1-203ENST00000552167 567 ntTSL 4 BASIC3.79□□□□□ -1.8
TNFRSF4P43489 PCLAF-203ENST00000558008 766 ntTSL 3 BASIC3.79□□□□□ -1.8
TNFRSF4P43489 AC023825.1-201ENST00000566704 1030 ntBASIC3.79□□□□□ -1.8
TNFRSF4P43489 AC005412.1-201ENST00000580812 1049 ntBASIC3.79□□□□□ -1.8
TNFRSF4P43489 CCDC178-211ENST00000581852 876 ntAPPRIS ALT2 TSL 2 BASIC3.79□□□□□ -1.8
TNFRSF4P43489 AC097717.1-211ENST00000600604 687 ntTSL 5 BASIC3.79□□□□□ -1.8
TNFRSF4P43489 ELOCP35-201ENST00000604289 336 ntBASIC3.79□□□□□ -1.8
TNFRSF4P43489 AL161756.2-201ENST00000604597 246 ntBASIC3.79□□□□□ -1.8
TNFRSF4P43489 AL137849.1-201ENST00000604767 169 ntBASIC3.79□□□□□ -1.8
TNFRSF4P43489 AC099785.1-201ENST00000605697 437 ntBASIC3.79□□□□□ -1.8
TNFRSF4P43489 AC124016.2-201ENST00000610058 665 ntBASIC3.79□□□□□ -1.8
TNFRSF4P43489 AC096577.2-201ENST00000611455 153 ntBASIC3.79□□□□□ -1.8
TNFRSF4P43489 AC105227.2-201ENST00000615075 605 ntBASIC3.79□□□□□ -1.8
TNFRSF4P43489 AC022306.3-201ENST00000619930 550 ntBASIC3.79□□□□□ -1.8
TNFRSF4P43489 DLG2-AS1_1.1-201ENST00000622319 213 ntBASIC3.79□□□□□ -1.8
TNFRSF4P43489 AC010872.1-201ENST00000624225 675 ntBASIC3.79□□□□□ -1.8
TNFRSF4P43489 LINC00836-203ENST00000628620 1179 ntTSL 5 BASIC3.79□□□□□ -1.8
TNFRSF4P43489 SATB1-AS1-263ENST00000630022 622 ntTSL 5 BASIC3.79□□□□□ -1.8
TNFRSF4P43489 AC134980.1-208ENST00000640228 535 ntTSL 5 BASIC3.79□□□□□ -1.8
TNFRSF4P43489 RNF111-206ENST00000559209 5278 ntTSL 1 (best) BASIC3.79□□□□□ -1.8
TNFRSF4P43489 MS4A14-201ENST00000300187 2997 ntAPPRIS P3 TSL 1 (best) BASIC3.79□□□□□ -1.8
TNFRSF4P43489 CNGA1-201ENST00000358519 2627 ntAPPRIS P3 TSL 1 (best) BASIC3.79□□□□□ -1.8
TNFRSF4P43489 ITCH-202ENST00000374864 6401 ntAPPRIS P1 TSL 1 (best) BASIC3.79□□□□□ -1.8
TNFRSF4P43489 AC019117.3-201ENST00000637807 3523 ntAPPRIS P1 TSL 5 BASIC3.79□□□□□ -1.8
Retrieved 100 of 98,524 protein–RNA pairs in 166.8 ms