Protein–RNA interactions for Protein: P31249

HOXD3, Homeobox protein Hox-D3, humanhuman

Predicted RBP Predictions only

Length 432 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD3P31249 C10orf128-207ENST00000474718 614 ntAPPRIS P3 TSL 1 (best) BASIC3.88□□□□□ -1.79
HOXD3P31249 RN7SL481P-201ENST00000477764 299 ntBASIC3.88□□□□□ -1.79
HOXD3P31249 PLS1-AS1-201ENST00000485338 346 ntTSL 3 BASIC3.88□□□□□ -1.79
HOXD3P31249 AL049874.2-201ENST00000492636 288 ntBASIC3.88□□□□□ -1.79
HOXD3P31249 AC034234.1-201ENST00000502993 465 ntTSL 3 BASIC3.88□□□□□ -1.79
HOXD3P31249 AC113404.3-201ENST00000506621 555 ntTSL 5 BASIC3.88□□□□□ -1.79
HOXD3P31249 POU5F1P7-201ENST00000508759 541 ntBASIC3.88□□□□□ -1.79
HOXD3P31249 NDUFB4P2-201ENST00000509515 391 ntBASIC3.88□□□□□ -1.79
HOXD3P31249 WWC2-AS1-201ENST00000511846 404 ntTSL 1 (best) BASIC3.88□□□□□ -1.79
HOXD3P31249 HHIP-AS1-203ENST00000512359 646 ntTSL 3 BASIC3.88□□□□□ -1.79
HOXD3P31249 RNA5SP216-201ENST00000516111 123 ntBASIC3.88□□□□□ -1.79
HOXD3P31249 AC022915.1-201ENST00000521660 289 ntTSL 3 BASIC3.88□□□□□ -1.79
HOXD3P31249 AC009884.1-201ENST00000522670 545 ntTSL 4 BASIC3.88□□□□□ -1.79
HOXD3P31249 MS4A13-204ENST00000527948 790 ntTSL 1 (best) BASIC3.88□□□□□ -1.79
HOXD3P31249 AC027369.5-201ENST00000533838 755 ntBASIC3.88□□□□□ -1.79
HOXD3P31249 OR5AN2P-201ENST00000534535 896 ntBASIC3.88□□□□□ -1.79
HOXD3P31249 AC068993.2-201ENST00000546563 395 ntTSL 5 BASIC3.88□□□□□ -1.79
HOXD3P31249 CCNG2P1-201ENST00000549521 1000 ntBASIC3.88□□□□□ -1.79
HOXD3P31249 AL359219.2-201ENST00000555184 348 ntBASIC3.88□□□□□ -1.79
HOXD3P31249 AL133241.1-201ENST00000556832 487 ntBASIC3.88□□□□□ -1.79
HOXD3P31249 AC009269.3-201ENST00000558429 472 ntTSL 5 BASIC3.88□□□□□ -1.79
HOXD3P31249 AC009554.1-201ENST00000559251 399 ntTSL 5 BASIC3.88□□□□□ -1.79
HOXD3P31249 AC136619.2-201ENST00000563361 631 ntBASIC3.88□□□□□ -1.79
HOXD3P31249 MIR4307-201ENST00000582802 84 ntBASIC3.88□□□□□ -1.79
HOXD3P31249 AC008745.1-201ENST00000604064 271 ntBASIC3.88□□□□□ -1.79
HOXD3P31249 MEMO1P5-201ENST00000604810 406 ntBASIC3.88□□□□□ -1.79
HOXD3P31249 AC019080.3-201ENST00000606180 444 ntTSL 5 BASIC3.88□□□□□ -1.79
HOXD3P31249 AL024498.1-201ENST00000606522 1100 ntTSL 3 BASIC3.88□□□□□ -1.79
HOXD3P31249 AC007563.2-202ENST00000607591 394 ntTSL 3 BASIC3.88□□□□□ -1.79
HOXD3P31249 Z98949.1-212ENST00000609820 837 ntTSL 5 BASIC3.88□□□□□ -1.79
HOXD3P31249 PACRG-211ENST00000621363 360 ntTSL 5 BASIC3.88□□□□□ -1.79
HOXD3P31249 CTSLP2-203ENST00000628708 493 ntTSL 5 BASIC3.88□□□□□ -1.79
HOXD3P31249 ALB-201ENST00000295897 2263 ntAPPRIS P1 TSL 1 (best) BASIC3.88□□□□□ -1.79
HOXD3P31249 ABI3BP-215ENST00000495063 3714 ntTSL 1 (best) BASIC3.88□□□□□ -1.79
HOXD3P31249 ATF2-221ENST00000538946 1325 ntTSL 5 BASIC3.88□□□□□ -1.79
HOXD3P31249 PDE4D-205ENST00000360047 3122 ntTSL 1 (best) BASIC3.88□□□□□ -1.79
HOXD3P31249 Z95327.2-201ENST00000414579 1873 ntBASIC3.88□□□□□ -1.79
HOXD3P31249 LINC02203-203ENST00000625989 1600 ntTSL 1 (best) BASIC3.88□□□□□ -1.79
HOXD3P31249 OMG-201ENST00000247271 1947 ntAPPRIS P1 TSL 1 (best) BASIC3.87□□□□□ -1.79
HOXD3P31249 LMNTD1-204ENST00000458174 1677 ntAPPRIS ALT2 TSL 2 BASIC3.87□□□□□ -1.79
HOXD3P31249 AL022578.1-201ENST00000439330 1433 ntBASIC3.87□□□□□ -1.79
HOXD3P31249 CNTN5-207ENST00000527185 4303 ntTSL 1 (best) BASIC3.87□□□□□ -1.79
HOXD3P31249 ZNF616-204ENST00000600228 4335 ntAPPRIS P1 TSL 1 (best) BASIC3.87□□□□□ -1.79
HOXD3P31249 HACD4-202ENST00000495827 8267 ntAPPRIS P1 TSL 2 BASIC3.87□□□□□ -1.79
HOXD3P31249 VPS50-202ENST00000305866 3613 ntAPPRIS P1 TSL 1 (best) BASIC3.87□□□□□ -1.79
HOXD3P31249 AC092821.1-201ENST00000640129 4180 ntAPPRIS P1 TSL 5 BASIC3.87□□□□□ -1.79
HOXD3P31249 SLCO1C1-201ENST00000266509 3365 ntAPPRIS P1 TSL 1 (best) BASIC3.87□□□□□ -1.79
HOXD3P31249 BDNF-AS-202ENST00000499568 2039 ntTSL 1 (best) BASIC3.87□□□□□ -1.79
HOXD3P31249 NUP155-202ENST00000381843 4200 ntTSL 1 (best) BASIC3.87□□□□□ -1.79
HOXD3P31249 CDC23-202ENST00000394886 3155 ntAPPRIS P1 TSL 1 (best) BASIC3.87□□□□□ -1.79
HOXD3P31249 RGS13-204ENST00000543215 1518 ntAPPRIS P1 TSL 1 (best) BASIC3.87□□□□□ -1.79
HOXD3P31249 ERI2-202ENST00000357967 3499 ntAPPRIS P1 TSL 5 BASIC3.87□□□□□ -1.79
HOXD3P31249 SLC15A2-201ENST00000295605 2379 ntTSL 2 BASIC3.87□□□□□ -1.79
HOXD3P31249 R3HDM1-201ENST00000264160 4648 ntAPPRIS P3 TSL 1 (best) BASIC3.87□□□□□ -1.79
HOXD3P31249 RN7SKP226-201ENST00000364912 300 ntBASIC3.87□□□□□ -1.79
HOXD3P31249 C1orf189-201ENST00000368525 387 ntAPPRIS P1 TSL 1 (best) BASIC3.87□□□□□ -1.79
HOXD3P31249 RNU6-398P-201ENST00000384143 109 ntBASIC3.87□□□□□ -1.79
HOXD3P31249 RNA5SP87-201ENST00000384155 118 ntBASIC3.87□□□□□ -1.79
HOXD3P31249 RNU6-809P-201ENST00000384461 107 ntBASIC3.87□□□□□ -1.79
HOXD3P31249 TRAV12-2-201ENST00000390437 445 ntAPPRIS P1 BASIC3.87□□□□□ -1.79
HOXD3P31249 SNORA77-201ENST00000408716 125 ntBASIC3.87□□□□□ -1.79
HOXD3P31249 Y_RNA.604-201ENST00000410574 102 ntBASIC3.87□□□□□ -1.79
HOXD3P31249 ARSD-AS1-201ENST00000414053 816 ntTSL 2 BASIC3.87□□□□□ -1.79
HOXD3P31249 AC002456.1-201ENST00000415965 317 ntTSL 5 BASIC3.87□□□□□ -1.79
HOXD3P31249 Z97055.1-201ENST00000419730 712 ntBASIC3.87□□□□□ -1.79
HOXD3P31249 B3GALNT1P1-201ENST00000420569 975 ntBASIC3.87□□□□□ -1.79
HOXD3P31249 MTND4LP11-201ENST00000422184 280 ntBASIC3.87□□□□□ -1.79
HOXD3P31249 OR8F1P-201ENST00000425243 930 ntBASIC3.87□□□□□ -1.79
HOXD3P31249 AL929288.1-201ENST00000426262 746 ntTSL 3 BASIC3.87□□□□□ -1.79
HOXD3P31249 AL133268.3-201ENST00000428903 577 ntTSL 5 BASIC3.87□□□□□ -1.79
HOXD3P31249 AF230666.1-201ENST00000429151 786 ntTSL 2 BASIC3.87□□□□□ -1.79
HOXD3P31249 MRPS10P2-201ENST00000431226 381 ntBASIC3.87□□□□□ -1.79
HOXD3P31249 AL139415.2-201ENST00000431968 163 ntBASIC3.87□□□□□ -1.79
HOXD3P31249 AL713851.1-201ENST00000438753 918 ntTSL 5 BASIC3.87□□□□□ -1.79
HOXD3P31249 AL354754.1-201ENST00000449730 625 ntTSL 3 BASIC3.87□□□□□ -1.79
HOXD3P31249 USP9YP12-201ENST00000450481 570 ntBASIC3.87□□□□□ -1.79
HOXD3P31249 IGHV5-78-201ENST00000450948 295 ntBASIC3.87□□□□□ -1.79
HOXD3P31249 AL033528.1-201ENST00000453780 140 ntBASIC3.87□□□□□ -1.79
HOXD3P31249 TMED11P-201ENST00000479478 690 ntBASIC3.87□□□□□ -1.79
HOXD3P31249 RPL23AP72-201ENST00000492447 435 ntBASIC3.87□□□□□ -1.79
HOXD3P31249 AC108062.1-201ENST00000505133 637 ntTSL 3 BASIC3.87□□□□□ -1.79
HOXD3P31249 AC021678.1-201ENST00000505195 936 ntBASIC3.87□□□□□ -1.79
HOXD3P31249 LINC02229-201ENST00000508486 661 ntTSL 3 BASIC3.87□□□□□ -1.79
HOXD3P31249 AC116616.1-201ENST00000508815 366 ntTSL 3 BASIC3.87□□□□□ -1.79
HOXD3P31249 RNA5SP43-201ENST00000516559 110 ntBASIC3.87□□□□□ -1.79
HOXD3P31249 SMIM18-201ENST00000517349 905 ntAPPRIS P1 TSL 2 BASIC3.87□□□□□ -1.79
HOXD3P31249 TBCA-207ENST00000520039 157 ntTSL 3 BASIC3.87□□□□□ -1.79
HOXD3P31249 AC011363.1-201ENST00000524198 458 ntTSL 5 BASIC3.87□□□□□ -1.79
HOXD3P31249 MTND4LP18-201ENST00000526864 291 ntBASIC3.87□□□□□ -1.79
HOXD3P31249 MED28P5-201ENST00000528254 438 ntBASIC3.87□□□□□ -1.79
HOXD3P31249 MTCYBP41-201ENST00000528913 1123 ntBASIC3.87□□□□□ -1.79
HOXD3P31249 PTH-202ENST00000529816 799 ntAPPRIS P1 TSL 5 BASIC3.87□□□□□ -1.79
HOXD3P31249 AC055878.1-201ENST00000531858 281 ntTSL 3 BASIC3.87□□□□□ -1.79
HOXD3P31249 NTS-203ENST00000551529 801 ntTSL 3 BASIC3.87□□□□□ -1.79
HOXD3P31249 AL133279.1-201ENST00000553487 473 ntTSL 3 BASIC3.87□□□□□ -1.79
HOXD3P31249 NDUFB4P11-201ENST00000560510 395 ntBASIC3.87□□□□□ -1.79
HOXD3P31249 AC055874.1-201ENST00000561458 479 ntTSL 2 BASIC3.87□□□□□ -1.79
HOXD3P31249 AC087481.2-201ENST00000565492 330 ntBASIC3.87□□□□□ -1.79
HOXD3P31249 AC234778.2-201ENST00000566241 354 ntBASIC3.87□□□□□ -1.79
HOXD3P31249 AL121834.1-201ENST00000572284 509 ntBASIC3.87□□□□□ -1.79
Retrieved 100 of 98,524 protein–RNA pairs in 103.7 ms