Protein–RNA interactions for Protein: P20585

MSH3, DNA mismatch repair protein Msh3, humanhuman

Predictions only

Length 1,137 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH3P20585 RPL37P3-201ENST00000456825 293 ntBASIC4.04□□□□□ -1.76
MSH3P20585 AL133477.1-201ENST00000457472 514 ntBASIC4.04□□□□□ -1.76
MSH3P20585 AC092994.1-201ENST00000498604 279 ntTSL 3 BASIC4.04□□□□□ -1.76
MSH3P20585 RHOBTB3-204ENST00000504179 883 ntTSL 5 BASIC4.04□□□□□ -1.76
MSH3P20585 AC113347.4-201ENST00000506032 685 ntTSL 3 BASIC4.04□□□□□ -1.76
MSH3P20585 KRT19P6-201ENST00000510983 209 ntBASIC4.04□□□□□ -1.76
MSH3P20585 AC008494.2-201ENST00000514544 370 ntBASIC4.04□□□□□ -1.76
MSH3P20585 LY96-202ENST00000518893 430 ntTSL 3 BASIC4.04□□□□□ -1.76
MSH3P20585 IGLVIV-53-201ENST00000520107 367 ntBASIC4.04□□□□□ -1.76
MSH3P20585 GCSAML-207ENST00000527541 1094 ntAPPRIS ALT2 TSL 1 (best) BASIC4.04□□□□□ -1.76
MSH3P20585 HTN3-205ENST00000530128 775 ntAPPRIS P2 TSL 2 BASIC4.04□□□□□ -1.76
MSH3P20585 NAV2-AS3-201ENST00000534036 598 ntTSL 3 BASIC4.04□□□□□ -1.76
MSH3P20585 AC135001.1-201ENST00000544546 283 ntBASIC4.04□□□□□ -1.76
MSH3P20585 AL132780.1-201ENST00000548819 556 ntTSL 4 BASIC4.04□□□□□ -1.76
MSH3P20585 RAB3IP-214ENST00000550847 670 ntTSL 3 BASIC4.04□□□□□ -1.76
MSH3P20585 AL133279.2-201ENST00000556546 428 ntTSL 3 BASIC4.04□□□□□ -1.76
MSH3P20585 LINC02131-201ENST00000563289 419 ntTSL 2 BASIC4.04□□□□□ -1.76
MSH3P20585 AC091544.5-202ENST00000568297 374 ntTSL 3 BASIC4.04□□□□□ -1.76
MSH3P20585 AC136624.4-201ENST00000573044 370 ntBASIC4.04□□□□□ -1.76
MSH3P20585 AC079070.1-201ENST00000578740 555 ntTSL 2 BASIC4.04□□□□□ -1.76
MSH3P20585 AC011824.2-203ENST00000579975 633 ntTSL 3 BASIC4.04□□□□□ -1.76
MSH3P20585 MIR4512-201ENST00000583257 77 ntBASIC4.04□□□□□ -1.76
MSH3P20585 MYL12B-204ENST00000584539 1064 ntAPPRIS P1 TSL 3 BASIC4.04□□□□□ -1.76
MSH3P20585 LINC01899-203ENST00000584810 337 ntTSL 2 BASIC4.04□□□□□ -1.76
MSH3P20585 AC021171.1-201ENST00000603137 706 ntBASIC4.04□□□□□ -1.76
MSH3P20585 AL139344.1-201ENST00000605228 195 ntBASIC4.04□□□□□ -1.76
MSH3P20585 TUSC7.1-201ENST00000610969 165 ntBASIC4.04□□□□□ -1.76
MSH3P20585 AC107075.1-201ENST00000613695 314 ntBASIC4.04□□□□□ -1.76
MSH3P20585 PDCD6IPP1-201ENST00000615124 579 ntTSL 2 BASIC4.04□□□□□ -1.76
MSH3P20585 AC013727.1-201ENST00000618581 839 ntTSL 5 BASIC4.04□□□□□ -1.76
MSH3P20585 PCBP1-AS1-307ENST00000627050 912 ntTSL 5 BASIC4.04□□□□□ -1.76
MSH3P20585 MIR1322-201ENST00000638013 71 ntBASIC4.04□□□□□ -1.76
MSH3P20585 OR5BE1P-202ENST00000641168 1176 ntBASIC4.04□□□□□ -1.76
MSH3P20585 CDH9-201ENST00000231021 3079 ntAPPRIS P1 TSL 1 (best) BASIC4.04□□□□□ -1.76
MSH3P20585 LINC00630-205ENST00000440496 2101 ntTSL 1 (best) BASIC4.04□□□□□ -1.76
MSH3P20585 DNAJC10-201ENST00000264065 20129 ntAPPRIS P1 TSL 1 (best) BASIC4.04□□□□□ -1.76
MSH3P20585 POSTN-202ENST00000379743 3196 ntTSL 1 (best) BASIC4.04□□□□□ -1.76
MSH3P20585 LLPH-201ENST00000266604 7746 ntAPPRIS P1 TSL 1 (best) BASIC4.03□□□□□ -1.76
MSH3P20585 LINC02232-201ENST00000509932 4079 ntTSL 1 (best) BASIC4.03□□□□□ -1.76
MSH3P20585 MAPK10-253ENST00000641010 4072 ntBASIC4.03□□□□□ -1.76
MSH3P20585 FGD4-211ENST00000531134 2924 ntTSL 2 BASIC4.03□□□□□ -1.76
MSH3P20585 AC046195.1-201ENST00000518973 4171 ntTSL 2 BASIC4.03□□□□□ -1.76
MSH3P20585 AL512646.1-201ENST00000269395 1077 ntBASIC4.03□□□□□ -1.76
MSH3P20585 KRTAP27-1-201ENST00000382835 682 ntAPPRIS P1 BASIC4.03□□□□□ -1.76
MSH3P20585 SNORA37-201ENST00000384504 129 ntBASIC4.03□□□□□ -1.76
MSH3P20585 EEF1E1-BLOC1S5-201ENST00000397456 768 ntAPPRIS P1 TSL 3 BASIC4.03□□□□□ -1.76
MSH3P20585 AL391219.1-201ENST00000422570 483 ntBASIC4.03□□□□□ -1.76
MSH3P20585 AL358472.1-201ENST00000431295 329 ntBASIC4.03□□□□□ -1.76
MSH3P20585 LINC01680-201ENST00000434983 299 ntTSL 2 BASIC4.03□□□□□ -1.76
MSH3P20585 AC026353.1-201ENST00000470523 558 ntTSL 2 BASIC4.03□□□□□ -1.76
MSH3P20585 BTBD11-206ENST00000494235 811 ntTSL 2 BASIC4.03□□□□□ -1.76
MSH3P20585 DYNLL1P6-201ENST00000503440 264 ntBASIC4.03□□□□□ -1.76
MSH3P20585 FABP5P12-201ENST00000515543 389 ntBASIC4.03□□□□□ -1.76
MSH3P20585 SNORA3.4-201ENST00000515969 96 ntBASIC4.03□□□□□ -1.76
MSH3P20585 LINC00534-201ENST00000517400 793 ntTSL 2 BASIC4.03□□□□□ -1.76
MSH3P20585 IGKV2-38-201ENST00000517443 247 ntBASIC4.03□□□□□ -1.76
MSH3P20585 TATDN1-202ENST00000517678 815 ntTSL 3 BASIC4.03□□□□□ -1.76
MSH3P20585 AP000857.2-201ENST00000532123 419 ntTSL 3 BASIC4.03□□□□□ -1.76
MSH3P20585 AC004217.3-201ENST00000551552 878 ntBASIC4.03□□□□□ -1.76
MSH3P20585 LINC01269-201ENST00000553682 602 ntTSL 4 BASIC4.03□□□□□ -1.76
MSH3P20585 NBEAP1-201ENST00000554452 979 ntBASIC4.03□□□□□ -1.76
MSH3P20585 AL445363.2-202ENST00000555361 435 ntTSL 3 BASIC4.03□□□□□ -1.76
MSH3P20585 SRP54-AS1-203ENST00000556355 603 ntTSL 5 BASIC4.03□□□□□ -1.76
MSH3P20585 AC138305.2-201ENST00000561595 556 ntTSL 4 BASIC4.03□□□□□ -1.76
MSH3P20585 AC005412.1-201ENST00000580812 1049 ntBASIC4.03□□□□□ -1.76
MSH3P20585 NF1P5-201ENST00000588287 448 ntBASIC4.03□□□□□ -1.76
MSH3P20585 BNIP3P24-201ENST00000593398 557 ntBASIC4.03□□□□□ -1.76
MSH3P20585 MRPS35P3-201ENST00000603189 709 ntBASIC4.03□□□□□ -1.76
MSH3P20585 AC104662.1-201ENST00000604448 511 ntBASIC4.03□□□□□ -1.76
MSH3P20585 AP003392.5-201ENST00000607857 415 ntBASIC4.03□□□□□ -1.76
MSH3P20585 AC092653.1-201ENST00000608509 531 ntBASIC4.03□□□□□ -1.76
MSH3P20585 AC092683.1-209ENST00000612970 1105 ntTSL 5 BASIC4.03□□□□□ -1.76
MSH3P20585 AC092142.2-201ENST00000614642 354 ntTSL 3 BASIC4.03□□□□□ -1.76
MSH3P20585 MIR7151-201ENST00000617477 60 ntBASIC4.03□□□□□ -1.76
MSH3P20585 KBTBD2-208ENST00000621876 1196 ntTSL 5 BASIC4.03□□□□□ -1.76
MSH3P20585 FEZ2-201ENST00000305852 1782 ntTSL 5 BASIC4.03□□□□□ -1.76
MSH3P20585 GTDC1-206ENST00000409214 2954 ntAPPRIS P1 TSL 1 (best) BASIC4.03□□□□□ -1.76
MSH3P20585 MS4A14-208ENST00000531783 2910 ntAPPRIS ALT2 TSL 5 BASIC4.03□□□□□ -1.76
MSH3P20585 ZNF962P-201ENST00000443465 3140 ntBASIC4.03□□□□□ -1.76
MSH3P20585 CFAP44-202ENST00000393845 7069 ntAPPRIS ALT2 TSL 5 BASIC4.03□□□□□ -1.76
MSH3P20585 AC022031.1-201ENST00000585985 2593 ntBASIC4.03□□□□□ -1.77
MSH3P20585 SETDB2-202ENST00000317257 5619 ntAPPRIS ALT2 TSL 1 (best) BASIC4.02□□□□□ -1.77
MSH3P20585 MBNL1-224ENST00000545754 5147 ntTSL 5 BASIC4.02□□□□□ -1.77
MSH3P20585 AL031985.3-201ENST00000565390 2449 ntBASIC4.02□□□□□ -1.77
MSH3P20585 AC018555.1-201ENST00000567548 1980 ntBASIC4.02□□□□□ -1.77
MSH3P20585 MARK2P15-201ENST00000432204 2186 ntBASIC4.02□□□□□ -1.77
MSH3P20585 LINC01619-203ENST00000549802 2169 ntTSL 2 BASIC4.02□□□□□ -1.77
MSH3P20585 PREPL-207ENST00000409957 4703 ntTSL 5 BASIC4.02□□□□□ -1.77
MSH3P20585 RNU6-560P-201ENST00000364007 108 ntBASIC4.02□□□□□ -1.77
MSH3P20585 TUBD1-204ENST00000376094 1154 ntTSL 1 (best) BASIC4.02□□□□□ -1.77
MSH3P20585 GSTA8P-201ENST00000404253 637 ntBASIC4.02□□□□□ -1.77
MSH3P20585 RNU2-65P-201ENST00000410162 185 ntBASIC4.02□□□□□ -1.77
MSH3P20585 TPT1P2-201ENST00000413105 503 ntBASIC4.02□□□□□ -1.77
MSH3P20585 AC234782.4-201ENST00000417646 1048 ntBASIC4.02□□□□□ -1.77
MSH3P20585 AC007435.1-201ENST00000421086 415 ntBASIC4.02□□□□□ -1.77
MSH3P20585 BLOC1S2P1-201ENST00000428431 301 ntBASIC4.02□□□□□ -1.77
MSH3P20585 RPS27AP12-201ENST00000429552 465 ntBASIC4.02□□□□□ -1.77
MSH3P20585 MTCO1P54-201ENST00000430139 712 ntBASIC4.02□□□□□ -1.77
MSH3P20585 AC091390.1-201ENST00000433904 331 ntBASIC4.02□□□□□ -1.77
MSH3P20585 AC009299.3-203ENST00000435692 1096 ntTSL 5 BASIC4.02□□□□□ -1.77
Retrieved 100 of 98,524 protein–RNA pairs in 95.5 ms