Protein–RNA interactions for Protein: P01130

LDLR, Low-density lipoprotein receptor, humanhuman

Predictions only

Length 860 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LDLRP01130 KATNA1-202ENST00000335647 1684 ntAPPRIS P1 TSL 1 (best) BASIC4.15□□□□□ -1.75
LDLRP01130 KC6-201ENST00000592302 1713 ntTSL 1 (best) BASIC4.15□□□□□ -1.75
LDLRP01130 EMCN-209ENST00000511970 1377 ntAPPRIS ALT2 TSL 2 BASIC4.14□□□□□ -1.75
LDLRP01130 AP005901.5-201ENST00000545779 1796 ntBASIC4.14□□□□□ -1.75
LDLRP01130 ASAH2-201ENST00000329428 2184 ntTSL 1 (best) BASIC4.14□□□□□ -1.75
LDLRP01130 GPAM-201ENST00000348367 6371 ntAPPRIS P1 TSL 1 (best) BASIC4.14□□□□□ -1.75
LDLRP01130 MRPL42-206ENST00000549982 15582 ntAPPRIS P2 TSL 1 (best) BASIC4.14□□□□□ -1.75
LDLRP01130 AC026523.1-202ENST00000559363 1401 ntTSL 1 (best) BASIC4.14□□□□□ -1.75
LDLRP01130 NEDD4-201ENST00000338963 7019 ntTSL 1 (best) BASIC4.14□□□□□ -1.75
LDLRP01130 MLH1-212ENST00000455445 2296 ntTSL 2 BASIC4.14□□□□□ -1.75
LDLRP01130 LINC01289-201ENST00000519550 3712 ntTSL 1 (best) BASIC4.14□□□□□ -1.75
LDLRP01130 CEP295-201ENST00000325212 8057 ntAPPRIS P2 TSL 2 BASIC4.14□□□□□ -1.75
LDLRP01130 OR52E4-202ENST00000641726 2947 ntAPPRIS P1 BASIC4.14□□□□□ -1.75
LDLRP01130 FAM111A-201ENST00000361723 3592 ntAPPRIS P1 TSL 2 BASIC4.14□□□□□ -1.75
LDLRP01130 OSBPL6-201ENST00000190611 10513 ntAPPRIS P3 TSL 1 (best) BASIC4.14□□□□□ -1.75
LDLRP01130 MTTP-201ENST00000265517 4037 ntAPPRIS P1 TSL 1 (best) BASIC4.14□□□□□ -1.75
LDLRP01130 NPVF-201ENST00000222674 1190 ntAPPRIS P1 TSL 1 (best) BASIC4.14□□□□□ -1.75
LDLRP01130 CAPZA3-201ENST00000317658 1087 ntAPPRIS P1 BASIC4.14□□□□□ -1.75
LDLRP01130 OR5H2-201ENST00000355273 945 ntBASIC4.14□□□□□ -1.75
LDLRP01130 OR5H2-202ENST00000356526 930 ntAPPRIS P1 BASIC4.14□□□□□ -1.75
LDLRP01130 OR51A7-201ENST00000359350 1048 ntAPPRIS P1 BASIC4.14□□□□□ -1.75
LDLRP01130 RNU6-619P-201ENST00000365146 108 ntBASIC4.14□□□□□ -1.75
LDLRP01130 SNORD116.1-201ENST00000365628 92 ntBASIC4.14□□□□□ -1.75
LDLRP01130 KRTAP27-1-201ENST00000382835 682 ntAPPRIS P1 BASIC4.14□□□□□ -1.75
LDLRP01130 RNU6-413P-201ENST00000384115 107 ntBASIC4.14□□□□□ -1.75
LDLRP01130 TRGV8-201ENST00000390343 468 ntAPPRIS P1 BASIC4.14□□□□□ -1.75
LDLRP01130 AC008154.2-201ENST00000420268 414 ntTSL 3 BASIC4.14□□□□□ -1.75
LDLRP01130 AL513412.1-201ENST00000445708 553 ntTSL 4 BASIC4.14□□□□□ -1.75
LDLRP01130 COX6CP18-201ENST00000448769 222 ntBASIC4.14□□□□□ -1.75
LDLRP01130 ARL13A-202ENST00000450049 1102 ntAPPRIS P1 TSL 5 BASIC4.14□□□□□ -1.75
LDLRP01130 ART2BP-201ENST00000453501 499 ntBASIC4.14□□□□□ -1.75
LDLRP01130 RPS7P7-201ENST00000463499 571 ntBASIC4.14□□□□□ -1.75
LDLRP01130 C1orf185-202ENST00000467127 747 ntAPPRIS ALT2 TSL 3 BASIC4.14□□□□□ -1.75
LDLRP01130 UQCRHP4-201ENST00000471686 272 ntBASIC4.14□□□□□ -1.75
LDLRP01130 AC104689.1-201ENST00000473356 768 ntBASIC4.14□□□□□ -1.75
LDLRP01130 AC105137.1-201ENST00000484355 562 ntBASIC4.14□□□□□ -1.75
LDLRP01130 RPS26P15-201ENST00000488067 348 ntBASIC4.14□□□□□ -1.75
LDLRP01130 ALDH7A1P3-201ENST00000492517 345 ntBASIC4.14□□□□□ -1.75
LDLRP01130 LINC02017-201ENST00000496829 474 ntTSL 3 BASIC4.14□□□□□ -1.75
LDLRP01130 AL139147.1-201ENST00000502413 1156 ntTSL 2 BASIC4.14□□□□□ -1.75
LDLRP01130 AC048346.1-201ENST00000510247 144 ntBASIC4.14□□□□□ -1.75
LDLRP01130 AL117351.2-201ENST00000513571 157 ntBASIC4.14□□□□□ -1.75
LDLRP01130 RNU6-202P-201ENST00000515998 96 ntBASIC4.14□□□□□ -1.75
LDLRP01130 AC067817.1-201ENST00000518535 356 ntTSL 2 BASIC4.14□□□□□ -1.75
LDLRP01130 AC104233.2-201ENST00000518922 414 ntTSL 3 BASIC4.14□□□□□ -1.75
LDLRP01130 ELOC-204ENST00000519487 814 ntAPPRIS P1 TSL 2 BASIC4.14□□□□□ -1.75
LDLRP01130 AC024958.1-203ENST00000520256 577 ntTSL 2 BASIC4.14□□□□□ -1.75
LDLRP01130 SKP1-210ENST00000522855 802 ntAPPRIS P4 TSL 2 BASIC4.14□□□□□ -1.75
LDLRP01130 AP003730.1-201ENST00000524605 285 ntBASIC4.14□□□□□ -1.75
LDLRP01130 SOX5-AS1-201ENST00000539583 573 ntTSL 4 BASIC4.14□□□□□ -1.75
LDLRP01130 SNHG1-219ENST00000542112 780 ntTSL 3 BASIC4.14□□□□□ -1.75
LDLRP01130 AC068875.1-201ENST00000561054 463 ntTSL 3 BASIC4.14□□□□□ -1.75
LDLRP01130 AGGF1P6-201ENST00000569213 976 ntBASIC4.14□□□□□ -1.75
LDLRP01130 MIR3912-201ENST00000577566 105 ntBASIC4.14□□□□□ -1.75
LDLRP01130 AL157938.2-204ENST00000589667 826 ntTSL 5 BASIC4.14□□□□□ -1.75
LDLRP01130 AC008687.2-201ENST00000597865 520 ntBASIC4.14□□□□□ -1.75
LDLRP01130 AC010320.2-202ENST00000599125 595 ntTSL 4 BASIC4.14□□□□□ -1.75
LDLRP01130 AC021171.1-201ENST00000603137 706 ntBASIC4.14□□□□□ -1.75
LDLRP01130 AL591034.3-201ENST00000605511 685 ntBASIC4.14□□□□□ -1.75
LDLRP01130 AC107952.2-201ENST00000606048 486 ntBASIC4.14□□□□□ -1.75
LDLRP01130 AC012603.1-201ENST00000606424 528 ntBASIC4.14□□□□□ -1.75
LDLRP01130 AL162591.3-201ENST00000607963 681 ntTSL 3 BASIC4.14□□□□□ -1.75
LDLRP01130 ATXN3-251ENST00000617719 1074 ntTSL 5 BASIC4.14□□□□□ -1.75
LDLRP01130 U3.53-201ENST00000628922 216 ntBASIC4.14□□□□□ -1.75
LDLRP01130 MIR492-201ENST00000638676 116 ntBASIC4.14□□□□□ -1.75
LDLRP01130 CPHL1P-201ENST00000461341 3407 ntBASIC4.14□□□□□ -1.75
LDLRP01130 FAM208A-202ENST00000431842 7119 ntTSL 1 (best) BASIC4.14□□□□□ -1.75
LDLRP01130 LINC02432-202ENST00000509161 2839 ntTSL 2 BASIC4.14□□□□□ -1.75
LDLRP01130 LINC01619-203ENST00000549802 2169 ntTSL 2 BASIC4.14□□□□□ -1.75
LDLRP01130 ANKRD20A10P-201ENST00000457591 1515 ntBASIC4.14□□□□□ -1.75
LDLRP01130 PRKACB-208ENST00000394839 4200 ntTSL 2 BASIC4.14□□□□□ -1.75
LDLRP01130 ORC4-201ENST00000264169 6598 ntAPPRIS P1 TSL 5 BASIC4.14□□□□□ -1.75
LDLRP01130 AL136964.1-201ENST00000622038 2990 ntBASIC4.14□□□□□ -1.75
LDLRP01130 SCN3A-201ENST00000283254 9091 ntAPPRIS P3 TSL 1 (best) BASIC4.13□□□□□ -1.75
LDLRP01130 ANKRD28-215ENST00000624145 6383 ntTSL 2 BASIC4.13□□□□□ -1.75
LDLRP01130 SLC38A9-223ENST00000515629 2673 ntTSL 2 BASIC4.13□□□□□ -1.75
LDLRP01130 LINC00158-201ENST00000332587 1476 ntTSL 1 (best) BASIC4.13□□□□□ -1.75
LDLRP01130 PPP1R9A-208ENST00000456331 10090 ntTSL 1 (best) BASIC4.13□□□□□ -1.75
LDLRP01130 ZNF726-205ENST00000575986 1522 ntTSL 1 (best) BASIC4.13□□□□□ -1.75
LDLRP01130 HMGB1P5-201ENST00000255320 642 ntBASIC4.13□□□□□ -1.75
LDLRP01130 OR51F2-201ENST00000322110 993 ntAPPRIS ALT2 BASIC4.13□□□□□ -1.75
LDLRP01130 RNU4-92P-201ENST00000363783 136 ntBASIC4.13□□□□□ -1.75
LDLRP01130 MLLT3-201ENST00000380321 708 ntTSL 3 BASIC4.13□□□□□ -1.75
LDLRP01130 ZNF705D-201ENST00000400078 925 ntAPPRIS P1 TSL 2 BASIC4.13□□□□□ -1.75
LDLRP01130 PRRC2CP1-201ENST00000404428 159 ntBASIC4.13□□□□□ -1.75
LDLRP01130 SNORA11.1-201ENST00000408133 129 ntBASIC4.13□□□□□ -1.75
LDLRP01130 RPL23AP26-201ENST00000412728 464 ntBASIC4.13□□□□□ -1.75
LDLRP01130 AL663023.1-201ENST00000412932 853 ntTSL 3 BASIC4.13□□□□□ -1.75
LDLRP01130 AL117381.1-201ENST00000412972 374 ntTSL 3 BASIC4.13□□□□□ -1.75
LDLRP01130 GTF2IP23-201ENST00000423746 351 ntBASIC4.13□□□□□ -1.75
LDLRP01130 ZDHHC20P2-201ENST00000424108 429 ntBASIC4.13□□□□□ -1.75
LDLRP01130 AP001599.1-201ENST00000426771 361 ntTSL 3 BASIC4.13□□□□□ -1.75
LDLRP01130 AC239803.1-202ENST00000432038 590 ntTSL 1 (best) BASIC4.13□□□□□ -1.75
LDLRP01130 RPEP2-201ENST00000432149 701 ntBASIC4.13□□□□□ -1.75
LDLRP01130 AC084290.1-201ENST00000434995 374 ntBASIC4.13□□□□□ -1.75
LDLRP01130 LINC01052-201ENST00000437777 496 ntTSL 3 BASIC4.13□□□□□ -1.75
LDLRP01130 PPIAP17-201ENST00000438507 471 ntBASIC4.13□□□□□ -1.75
LDLRP01130 AC019330.1-202ENST00000440609 504 ntTSL 4 BASIC4.13□□□□□ -1.75
LDLRP01130 AC098484.1-201ENST00000447572 484 ntTSL 3 BASIC4.13□□□□□ -1.75
LDLRP01130 AC098820.1-201ENST00000453157 512 ntTSL 2 BASIC4.13□□□□□ -1.75
Retrieved 100 of 98,524 protein–RNA pairs in 136.5 ms