Protein–RNA interactions for Protein: O43365

HOXA3, Homeobox protein Hox-A3, humanhuman

Predicted RBP Predictions only

Length 443 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA3O43365 AL035416.1-201ENST00000443012 767 ntTSL 2 BASIC4.5□□□□□ -1.69
HOXA3O43365 AL139121.1-201ENST00000445647 244 ntTSL 2 BASIC4.5□□□□□ -1.69
HOXA3O43365 AC073342.1-202ENST00000446192 457 ntTSL 5 BASIC4.5□□□□□ -1.69
HOXA3O43365 RPL7P52-201ENST00000449200 742 ntBASIC4.5□□□□□ -1.69
HOXA3O43365 AL035090.1-201ENST00000454835 332 ntBASIC4.5□□□□□ -1.69
HOXA3O43365 snoU13.8-201ENST00000458890 104 ntBASIC4.5□□□□□ -1.69
HOXA3O43365 RN7SL172P-201ENST00000460535 303 ntBASIC4.5□□□□□ -1.69
HOXA3O43365 RPL23AP41-201ENST00000484754 458 ntBASIC4.5□□□□□ -1.69
HOXA3O43365 AC055855.1-201ENST00000489563 579 ntBASIC4.5□□□□□ -1.69
HOXA3O43365 AC024558.1-201ENST00000505008 528 ntBASIC4.5□□□□□ -1.69
HOXA3O43365 LINC02379-201ENST00000505741 300 ntTSL 3 BASIC4.5□□□□□ -1.69
HOXA3O43365 AC027613.1-201ENST00000508414 457 ntTSL 3 BASIC4.5□□□□□ -1.69
HOXA3O43365 RPS3A-210ENST00000512690 845 ntTSL 3 BASIC4.5□□□□□ -1.69
HOXA3O43365 AC093853.1-201ENST00000515689 483 ntBASIC4.5□□□□□ -1.69
HOXA3O43365 RNA5SP401-201ENST00000515920 127 ntBASIC4.5□□□□□ -1.69
HOXA3O43365 AC090572.1-201ENST00000519251 160 ntBASIC4.5□□□□□ -1.69
HOXA3O43365 AC136424.2-201ENST00000522582 563 ntTSL 4 BASIC4.5□□□□□ -1.69
HOXA3O43365 AP003072.2-201ENST00000527756 676 ntBASIC4.5□□□□□ -1.69
HOXA3O43365 AC103855.3-201ENST00000528445 606 ntTSL 5 BASIC4.5□□□□□ -1.69
HOXA3O43365 AC126615.2-201ENST00000553003 515 ntBASIC4.5□□□□□ -1.69
HOXA3O43365 AC004943.1-202ENST00000558618 503 ntTSL 3 BASIC4.5□□□□□ -1.69
HOXA3O43365 AC073964.1-201ENST00000558938 308 ntTSL 3 BASIC4.5□□□□□ -1.69
HOXA3O43365 PWRN4-201ENST00000563016 420 ntTSL 5 BASIC4.5□□□□□ -1.69
HOXA3O43365 AC007495.2-202ENST00000564102 535 ntTSL 4 BASIC4.5□□□□□ -1.69
HOXA3O43365 AC055876.1-202ENST00000567053 138 ntBASIC4.5□□□□□ -1.69
HOXA3O43365 CASC22-201ENST00000569713 386 ntTSL 5 BASIC4.5□□□□□ -1.69
HOXA3O43365 AC015917.1-201ENST00000579654 510 ntBASIC4.5□□□□□ -1.69
HOXA3O43365 MIR3146-201ENST00000580367 79 ntBASIC4.5□□□□□ -1.69
HOXA3O43365 SLC14A2-AS1-201ENST00000585759 494 ntTSL 3 BASIC4.5□□□□□ -1.69
HOXA3O43365 AC006504.5-202ENST00000586784 656 ntTSL 2 BASIC4.5□□□□□ -1.69
HOXA3O43365 AC114684.1-201ENST00000587659 352 ntTSL 3 BASIC4.5□□□□□ -1.69
HOXA3O43365 AL157938.2-203ENST00000589540 931 ntTSL 5 BASIC4.5□□□□□ -1.69
HOXA3O43365 PPP3CB-AS1-206ENST00000595935 675 ntTSL 5 BASIC4.5□□□□□ -1.69
HOXA3O43365 AC115621.1-201ENST00000604653 858 ntBASIC4.5□□□□□ -1.69
HOXA3O43365 DISC2.1-201ENST00000612827 205 ntBASIC4.5□□□□□ -1.69
HOXA3O43365 RDM1-226ENST00000619828 687 ntTSL 1 (best) BASIC4.5□□□□□ -1.69
HOXA3O43365 AC024940.5-201ENST00000622889 474 ntBASIC4.5□□□□□ -1.69
HOXA3O43365 AL356585.4-201ENST00000623078 1229 ntBASIC4.5□□□□□ -1.69
HOXA3O43365 AC079597.1-201ENST00000624306 508 ntBASIC4.5□□□□□ -1.69
HOXA3O43365 AL592430.2-201ENST00000633779 486 ntTSL 5 BASIC4.5□□□□□ -1.69
HOXA3O43365 AC138649.5-201ENST00000637456 137 ntBASIC4.5□□□□□ -1.69
HOXA3O43365 GABRG1-201ENST00000295452 6785 ntAPPRIS P1 TSL 1 (best) BASIC4.5□□□□□ -1.69
HOXA3O43365 NDUFS1-207ENST00000455934 3361 ntTSL 2 BASIC4.5□□□□□ -1.69
HOXA3O43365 POSTN-204ENST00000379749 3210 ntTSL 5 BASIC4.5□□□□□ -1.69
HOXA3O43365 ZNF788-203ENST00000430298 3941 ntTSL 2 BASIC4.5□□□□□ -1.69
HOXA3O43365 PRLR-201ENST00000231423 1679 ntTSL 1 (best) BASIC4.5□□□□□ -1.69
HOXA3O43365 DSPP-202ENST00000399271 4331 ntAPPRIS P1 TSL 5 BASIC4.5□□□□□ -1.69
HOXA3O43365 ZNF92-203ENST00000431504 2947 ntTSL 1 (best) BASIC4.5□□□□□ -1.69
HOXA3O43365 TGIF1-208ENST00000472042 2214 ntTSL 2 BASIC4.5□□□□□ -1.69
HOXA3O43365 AL590399.5-201ENST00000428709 3325 ntTSL 2 BASIC4.5□□□□□ -1.69
HOXA3O43365 BACH1-201ENST00000286800 5669 ntAPPRIS P1 TSL 1 (best) BASIC4.5□□□□□ -1.69
HOXA3O43365 IL1RL1-201ENST00000233954 2058 ntAPPRIS P1 TSL 1 (best) BASIC4.5□□□□□ -1.69
HOXA3O43365 SCFD1-207ENST00000544052 2058 ntTSL 2 BASIC4.5□□□□□ -1.69
HOXA3O43365 PRG4-202ENST00000367483 4921 ntTSL 5 BASIC4.5□□□□□ -1.69
HOXA3O43365 SGO2-201ENST00000357799 4214 ntAPPRIS P2 TSL 1 (best) BASIC4.5□□□□□ -1.69
HOXA3O43365 MBNL2-204ENST00000397601 4487 ntTSL 5 BASIC4.5□□□□□ -1.69
HOXA3O43365 WASHC4-202ENST00000332180 5812 ntAPPRIS P3 TSL 1 (best) BASIC4.5□□□□□ -1.69
HOXA3O43365 ZC3H12B-201ENST00000338957 7256 ntAPPRIS P1 TSL 1 (best) BASIC4.5□□□□□ -1.69
HOXA3O43365 TESPA1-203ENST00000524622 4188 ntAPPRIS ALT2 TSL 1 (best) BASIC4.5□□□□□ -1.69
HOXA3O43365 TDRD5-202ENST00000367614 3632 ntAPPRIS P3 TSL 2 BASIC4.5□□□□□ -1.69
HOXA3O43365 LRRC39-203ENST00000370138 1466 ntTSL 5 BASIC4.49□□□□□ -1.69
HOXA3O43365 SENP7-204ENST00000394085 1483 ntTSL 1 (best) BASIC4.49□□□□□ -1.69
HOXA3O43365 AASDH-210ENST00000602986 3480 ntTSL 5 BASIC4.49□□□□□ -1.69
HOXA3O43365 SEC31A-204ENST00000355196 4104 ntAPPRIS P4 TSL 2 BASIC4.49□□□□□ -1.69
HOXA3O43365 SLCO1A2-201ENST00000307378 7682 ntAPPRIS P1 TSL 1 (best) BASIC4.49□□□□□ -1.69
HOXA3O43365 PTPN13-202ENST00000411767 8119 ntAPPRIS ALT2 TSL 1 (best) BASIC4.49□□□□□ -1.69
HOXA3O43365 NFKBIZ-203ENST00000394054 3787 ntAPPRIS ALT2 TSL 1 (best) BASIC4.49□□□□□ -1.69
HOXA3O43365 MMAA-205ENST00000541599 1437 ntTSL 5 BASIC4.49□□□□□ -1.69
HOXA3O43365 AC064875.1-201ENST00000425974 1942 ntTSL 2 BASIC4.49□□□□□ -1.69
HOXA3O43365 AC105074.1-201ENST00000623380 3095 ntBASIC4.49□□□□□ -1.69
HOXA3O43365 TOP2B-201ENST00000264331 5358 ntAPPRIS ALT2 TSL 5 BASIC4.49□□□□□ -1.69
HOXA3O43365 NRXN1-242ENST00000635519 3553 ntTSL 5 BASIC4.49□□□□□ -1.69
HOXA3O43365 RNU6-845P-201ENST00000362578 103 ntBASIC4.49□□□□□ -1.69
HOXA3O43365 SNORD1C-201ENST00000363315 78 ntBASIC4.49□□□□□ -1.69
HOXA3O43365 RNU6-1097P-201ENST00000363586 107 ntBASIC4.49□□□□□ -1.69
HOXA3O43365 Y_RNA.234-201ENST00000364409 97 ntBASIC4.49□□□□□ -1.69
HOXA3O43365 RNU6-359P-201ENST00000365466 108 ntBASIC4.49□□□□□ -1.69
HOXA3O43365 RNU6-108P-201ENST00000365558 107 ntBASIC4.49□□□□□ -1.69
HOXA3O43365 MIR551A-201ENST00000385042 96 ntBASIC4.49□□□□□ -1.69
HOXA3O43365 IGKV5-2-201ENST00000390244 408 ntAPPRIS P1 BASIC4.49□□□□□ -1.69
HOXA3O43365 RNU2-9P-201ENST00000410194 145 ntBASIC4.49□□□□□ -1.69
HOXA3O43365 RNU2-21P-201ENST00000410368 188 ntBASIC4.49□□□□□ -1.69
HOXA3O43365 RN7SKP235-201ENST00000410662 305 ntBASIC4.49□□□□□ -1.69
HOXA3O43365 RNU6-1068P-201ENST00000410958 103 ntBASIC4.49□□□□□ -1.69
HOXA3O43365 AL139148.1-201ENST00000427122 680 ntBASIC4.49□□□□□ -1.69
HOXA3O43365 AL590666.1-201ENST00000428641 433 ntTSL 2 BASIC4.49□□□□□ -1.69
HOXA3O43365 USP24P1-201ENST00000433802 779 ntBASIC4.49□□□□□ -1.69
HOXA3O43365 GPR143P-201ENST00000434155 205 ntBASIC4.49□□□□□ -1.69
HOXA3O43365 GAPDHP58-201ENST00000438477 1006 ntBASIC4.49□□□□□ -1.69
HOXA3O43365 AC114495.1-201ENST00000441274 436 ntBASIC4.49□□□□□ -1.69
HOXA3O43365 AC016691.1-201ENST00000441321 413 ntBASIC4.49□□□□□ -1.69
HOXA3O43365 AL161629.1-201ENST00000446201 457 ntTSL 3 BASIC4.49□□□□□ -1.69
HOXA3O43365 AC079354.3-201ENST00000447111 311 ntTSL 2 BASIC4.49□□□□□ -1.69
HOXA3O43365 AC239809.1-201ENST00000450470 217 ntBASIC4.49□□□□□ -1.69
HOXA3O43365 AL034345.2-203ENST00000453417 383 ntTSL 3 BASIC4.49□□□□□ -1.69
HOXA3O43365 RNU6-261P-201ENST00000459506 102 ntBASIC4.49□□□□□ -1.69
HOXA3O43365 MTCO2P29-201ENST00000465212 189 ntBASIC4.49□□□□□ -1.69
HOXA3O43365 AC117430.1-201ENST00000474711 801 ntTSL 5 BASIC4.49□□□□□ -1.69
HOXA3O43365 TRBV5-2-201ENST00000489095 273 ntBASIC4.49□□□□□ -1.69
HOXA3O43365 AC008517.1-201ENST00000502383 585 ntTSL 4 BASIC4.49□□□□□ -1.69
Retrieved 100 of 98,524 protein–RNA pairs in 96.9 ms