Protein–RNA interactions for Protein: O00322

UPK1A, Uroplakin-1a, humanhuman

Predictions only

Length 258 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UPK1AO00322 GTF2H2B-203ENST00000508065 1432 ntBASIC3.15□□□□□ -1.91
UPK1AO00322 AK9-201ENST00000285397 2566 ntTSL 1 (best) BASIC3.15□□□□□ -1.91
UPK1AO00322 SGMS2-201ENST00000359079 1887 ntAPPRIS P1 TSL 1 (best) BASIC3.15□□□□□ -1.91
UPK1AO00322 RNMT-206ENST00000589866 1879 ntAPPRIS P1 TSL 1 (best) BASIC3.15□□□□□ -1.91
UPK1AO00322 RBM39-201ENST00000253363 2488 ntAPPRIS P4 TSL 1 (best) BASIC3.15□□□□□ -1.91
UPK1AO00322 CC2D2B-210ENST00000636965 3247 ntTSL 5 BASIC3.15□□□□□ -1.91
UPK1AO00322 ZNF542P-204ENST00000482727 1305 ntBASIC3.15□□□□□ -1.91
UPK1AO00322 C2orf73-202ENST00000398634 1921 ntAPPRIS P1 TSL 1 (best) BASIC3.15□□□□□ -1.91
UPK1AO00322 RAPGEF6-202ENST00000308008 4176 ntTSL 1 (best) BASIC3.15□□□□□ -1.91
UPK1AO00322 PRRG1-202ENST00000449135 4481 ntAPPRIS P1 TSL 1 (best) BASIC3.15□□□□□ -1.91
UPK1AO00322 OSBPL9P4-201ENST00000371707 1800 ntBASIC3.14□□□□□ -1.91
UPK1AO00322 CR383658.2-201ENST00000547576 1525 ntBASIC3.14□□□□□ -1.91
UPK1AO00322 NR5A2-201ENST00000236914 3115 ntTSL 1 (best) BASIC3.14□□□□□ -1.91
UPK1AO00322 SEL1L2-202ENST00000378072 1892 ntTSL 2 BASIC3.14□□□□□ -1.91
UPK1AO00322 LINC00670-201ENST00000313495 2953 ntTSL 2 BASIC3.14□□□□□ -1.91
UPK1AO00322 LRRC77P-206ENST00000481578 2350 ntTSL 1 (best) BASIC3.14□□□□□ -1.91
UPK1AO00322 SNORA62.3-201ENST00000365110 153 ntBASIC3.14□□□□□ -1.91
UPK1AO00322 AKAP14-202ENST00000371422 412 ntAPPRIS ALT2 TSL 1 (best) BASIC3.14□□□□□ -1.91
UPK1AO00322 CXorf65-201ENST00000374251 601 ntAPPRIS P1 TSL 5 BASIC3.14□□□□□ -1.91
UPK1AO00322 AL589655.1-201ENST00000405398 482 ntBASIC3.14□□□□□ -1.91
UPK1AO00322 AC007390.1-201ENST00000415722 356 ntBASIC3.14□□□□□ -1.91
UPK1AO00322 LINC02263-202ENST00000420701 597 ntTSL 5 BASIC3.14□□□□□ -1.91
UPK1AO00322 TTC3-AS1-201ENST00000424733 1097 ntTSL 1 (best) BASIC3.14□□□□□ -1.91
UPK1AO00322 AL357832.1-201ENST00000427460 420 ntTSL 3 BASIC3.14□□□□□ -1.91
UPK1AO00322 ELOCP6-201ENST00000429066 328 ntBASIC3.14□□□□□ -1.91
UPK1AO00322 TRIM60P3Y-201ENST00000432201 673 ntBASIC3.14□□□□□ -1.91
UPK1AO00322 AL139383.1-203ENST00000445227 420 ntTSL 3 BASIC3.14□□□□□ -1.91
UPK1AO00322 ELOCP12-201ENST00000458706 328 ntBASIC3.14□□□□□ -1.91
UPK1AO00322 TMED11P-201ENST00000479478 690 ntBASIC3.14□□□□□ -1.91
UPK1AO00322 FO393419.2-201ENST00000492975 428 ntTSL 3 BASIC3.14□□□□□ -1.91
UPK1AO00322 AC093278.1-201ENST00000494700 600 ntBASIC3.14□□□□□ -1.91
UPK1AO00322 AC108043.1-201ENST00000512696 574 ntBASIC3.14□□□□□ -1.91
UPK1AO00322 AC079160.1-201ENST00000513489 739 ntTSL 1 (best) BASIC3.14□□□□□ -1.91
UPK1AO00322 AC245166.1-201ENST00000521012 253 ntBASIC3.14□□□□□ -1.91
UPK1AO00322 PTP4A1P6-201ENST00000531034 478 ntBASIC3.14□□□□□ -1.91
UPK1AO00322 AC107032.2-201ENST00000551082 386 ntTSL 3 BASIC3.14□□□□□ -1.91
UPK1AO00322 POLR2KP1-201ENST00000553226 168 ntBASIC3.14□□□□□ -1.91
UPK1AO00322 AC005476.1-201ENST00000554427 397 ntBASIC3.14□□□□□ -1.91
UPK1AO00322 AC103808.1-201ENST00000579833 922 ntTSL 3 BASIC3.14□□□□□ -1.91
UPK1AO00322 AP001180.3-201ENST00000582221 145 ntBASIC3.14□□□□□ -1.91
UPK1AO00322 AC022601.1-201ENST00000596954 577 ntTSL 4 BASIC3.14□□□□□ -1.91
UPK1AO00322 AC069304.3-201ENST00000603938 1084 ntBASIC3.14□□□□□ -1.91
UPK1AO00322 AC011816.2-201ENST00000607089 556 ntBASIC3.14□□□□□ -1.91
UPK1AO00322 C8orf89-201ENST00000613105 495 ntAPPRIS ALT2 TSL 1 (best) BASIC3.14□□□□□ -1.91
UPK1AO00322 AK6-205ENST00000618980 483 ntTSL 2 BASIC3.14□□□□□ -1.91
UPK1AO00322 FAM49B-230ENST00000639004 837 ntTSL 5 BASIC3.14□□□□□ -1.91
UPK1AO00322 VPS13C-203ENST00000395896 14579 ntAPPRIS ALT2 TSL 1 (best) BASIC3.14□□□□□ -1.91
UPK1AO00322 C8orf22-201ENST00000303202 1499 ntTSL 1 (best) BASIC3.14□□□□□ -1.91
UPK1AO00322 LPAR4-201ENST00000435339 2611 ntAPPRIS P1 TSL 1 (best) BASIC3.14□□□□□ -1.91
UPK1AO00322 SEPT7P7-201ENST00000420492 1301 ntBASIC3.14□□□□□ -1.91
UPK1AO00322 ZNF479-201ENST00000319636 1811 ntAPPRIS P1 TSL 1 (best) BASIC3.14□□□□□ -1.91
UPK1AO00322 ABCC9-202ENST00000261201 4650 ntAPPRIS ALT1 TSL 5 BASIC3.14□□□□□ -1.91
UPK1AO00322 AC107081.3-201ENST00000612715 2034 ntBASIC3.14□□□□□ -1.91
UPK1AO00322 CREBRF-201ENST00000296953 7778 ntAPPRIS P1 TSL 1 (best) BASIC3.14□□□□□ -1.91
UPK1AO00322 MTND5P27-201ENST00000428871 1720 ntBASIC3.13□□□□□ -1.91
UPK1AO00322 RTKN2-202ENST00000373789 6641 ntAPPRIS P1 TSL 1 (best) BASIC3.13□□□□□ -1.91
UPK1AO00322 AC025125.1-201ENST00000624743 1922 ntBASIC3.13□□□□□ -1.91
UPK1AO00322 AC092326.2-201ENST00000624772 1561 ntBASIC3.13□□□□□ -1.91
UPK1AO00322 EXTL2-201ENST00000370113 2835 ntAPPRIS P1 TSL 1 (best) BASIC3.13□□□□□ -1.91
UPK1AO00322 MBNL1-206ENST00000357472 5256 ntTSL 5 BASIC3.13□□□□□ -1.91
UPK1AO00322 MBNL1-223ENST00000498502 5258 ntTSL 5 BASIC3.13□□□□□ -1.91
UPK1AO00322 RNA5SP119-201ENST00000362715 117 ntBASIC3.13□□□□□ -1.91
UPK1AO00322 U3.6-201ENST00000363622 211 ntBASIC3.13□□□□□ -1.91
UPK1AO00322 MIR200C-201ENST00000384980 68 ntBASIC3.13□□□□□ -1.91
UPK1AO00322 RPL21P3-201ENST00000395517 478 ntBASIC3.13□□□□□ -1.91
UPK1AO00322 OFD1P1Y-201ENST00000411756 1225 ntBASIC3.13□□□□□ -1.91
UPK1AO00322 AC004022.2-201ENST00000413824 193 ntBASIC3.13□□□□□ -1.91
UPK1AO00322 EPGN-202ENST00000413830 1196 ntAPPRIS P1 TSL 1 (best) BASIC3.13□□□□□ -1.91
UPK1AO00322 LINC01389-201ENST00000420876 483 ntTSL 3 BASIC3.13□□□□□ -1.91
UPK1AO00322 AP003025.1-201ENST00000421650 149 ntTSL 1 (best) BASIC3.13□□□□□ -1.91
UPK1AO00322 GCA-203ENST00000429691 824 ntTSL 3 BASIC3.13□□□□□ -1.91
UPK1AO00322 AL683807.1-202ENST00000432272 382 ntTSL 2 BASIC3.13□□□□□ -1.91
UPK1AO00322 NEK4P1-201ENST00000433383 879 ntBASIC3.13□□□□□ -1.91
UPK1AO00322 LINC01878-201ENST00000434559 769 ntTSL 3 BASIC3.13□□□□□ -1.91
UPK1AO00322 SAMSN1-AS1-201ENST00000449214 840 ntTSL 3 BASIC3.13□□□□□ -1.91
UPK1AO00322 LINC00377-201ENST00000456588 657 ntTSL 5 BASIC3.13□□□□□ -1.91
UPK1AO00322 AC146507.2-201ENST00000460608 476 ntBASIC3.13□□□□□ -1.91
UPK1AO00322 AC091564.1-201ENST00000464563 479 ntBASIC3.13□□□□□ -1.91
UPK1AO00322 AC126121.2-201ENST00000486137 698 ntTSL 3 BASIC3.13□□□□□ -1.91
UPK1AO00322 AC006499.5-201ENST00000505037 514 ntBASIC3.13□□□□□ -1.91
UPK1AO00322 SNORA67.7-201ENST00000516664 135 ntBASIC3.13□□□□□ -1.91
UPK1AO00322 AC079098.1-202ENST00000523150 573 ntTSL 5 BASIC3.13□□□□□ -1.91
UPK1AO00322 OR5M10-201ENST00000526812 1052 ntAPPRIS P1 BASIC3.13□□□□□ -1.91
UPK1AO00322 OR56A5-202ENST00000532411 942 ntAPPRIS P1 BASIC3.13□□□□□ -1.91
UPK1AO00322 AC007458.1-201ENST00000542812 373 ntBASIC3.13□□□□□ -1.91
UPK1AO00322 AC069029.1-201ENST00000558736 263 ntTSL 2 BASIC3.13□□□□□ -1.91
UPK1AO00322 AC106745.1-201ENST00000566798 464 ntTSL 2 BASIC3.13□□□□□ -1.91
UPK1AO00322 AC093515.1-201ENST00000567103 445 ntTSL 5 BASIC3.13□□□□□ -1.91
UPK1AO00322 AL353708.2-201ENST00000567486 447 ntTSL 3 BASIC3.13□□□□□ -1.91
UPK1AO00322 MIR5186-201ENST00000577504 120 ntBASIC3.13□□□□□ -1.91
UPK1AO00322 MIR3158-1-201ENST00000583596 81 ntBASIC3.13□□□□□ -1.91
UPK1AO00322 WDR7-OT1-201ENST00000592032 565 ntTSL 4 BASIC3.13□□□□□ -1.91
UPK1AO00322 SUMO2P14-201ENST00000604488 293 ntBASIC3.13□□□□□ -1.91
UPK1AO00322 U3.45-201ENST00000607547 219 ntBASIC3.13□□□□□ -1.91
UPK1AO00322 AF117829.1-206ENST00000621883 3802 ntBASIC3.13□□□□□ -1.91
UPK1AO00322 AL359094.1-202ENST00000629917 1113 ntTSL 5 BASIC3.13□□□□□ -1.91
UPK1AO00322 THEMIS-201ENST00000368248 3866 ntAPPRIS P3 TSL 1 (best) BASIC3.13□□□□□ -1.91
UPK1AO00322 SLC38A9-203ENST00000416547 2236 ntTSL 5 BASIC3.13□□□□□ -1.91
UPK1AO00322 HSPA8P19-201ENST00000505359 1517 ntBASIC3.13□□□□□ -1.91
UPK1AO00322 ATM-203ENST00000452508 12954 ntAPPRIS P1 TSL 1 (best) BASIC3.13□□□□□ -1.91
Retrieved 100 of 98,524 protein–RNA pairs in 191.5 ms