Protein–RNA interactions for Protein: Q9Y5H4

PCDHGA1, Protocadherin gamma-A1, humanhuman

Predictions only

Length 931 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHGA1Q9Y5H4 CIRBP-201ENST00000320936 1328 ntAPPRIS P3 TSL 1 (best) BASIC18.51■□□□□ 0.55
PCDHGA1Q9Y5H4 CIRBP-207ENST00000586472 1303 ntAPPRIS P3 TSL 3 BASIC18.51■□□□□ 0.55
PCDHGA1Q9Y5H4 DTWD2-203ENST00000510708 2307 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
PCDHGA1Q9Y5H4 EPOR-201ENST00000222139 2411 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
PCDHGA1Q9Y5H4 SPTBN4-203ENST00000392023 2419 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
PCDHGA1Q9Y5H4 PMPCA-201ENST00000371717 2174 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
PCDHGA1Q9Y5H4 EML2-201ENST00000245925 2264 ntAPPRIS P3 TSL 1 (best) BASIC18.51■□□□□ 0.55
PCDHGA1Q9Y5H4 CCDC130-201ENST00000221554 1792 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
PCDHGA1Q9Y5H4 PDIA5-201ENST00000316218 1799 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
PCDHGA1Q9Y5H4 CLDN14-202ENST00000399135 1752 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
PCDHGA1Q9Y5H4 EIF2B1-204ENST00000537073 1768 ntTSL 2 BASIC18.51■□□□□ 0.55
PCDHGA1Q9Y5H4 KDM2A-202ENST00000398645 6511 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
PCDHGA1Q9Y5H4 PIN1-201ENST00000247970 997 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
PCDHGA1Q9Y5H4 S100A11-201ENST00000271638 594 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
PCDHGA1Q9Y5H4 TBC1D7-202ENST00000356436 1116 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
PCDHGA1Q9Y5H4 MRPL43-205ENST00000370234 798 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
PCDHGA1Q9Y5H4 TBC1D7-204ENST00000379300 1276 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
PCDHGA1Q9Y5H4 NAT6-202ENST00000417393 1163 ntAPPRIS ALT2 TSL 1 (best) BASIC18.51■□□□□ 0.55
PCDHGA1Q9Y5H4 CNTD2-203ENST00000513948 787 ntAPPRIS ALT2 TSL 2 BASIC18.51■□□□□ 0.55
PCDHGA1Q9Y5H4 ANKRD34C-AS1-201ENST00000557790 594 ntTSL 3 BASIC18.51■□□□□ 0.55
PCDHGA1Q9Y5H4 GCSHP2-201ENST00000560971 527 ntBASIC18.51■□□□□ 0.55
PCDHGA1Q9Y5H4 CHMP2A-208ENST00000601220 885 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
PCDHGA1Q9Y5H4 L2HGDH-203ENST00000421284 1958 ntAPPRIS P1 TSL 2 BASIC18.51■□□□□ 0.55
PCDHGA1Q9Y5H4 LGALS9-202ENST00000313648 1378 ntTSL 3 BASIC18.51■□□□□ 0.55
PCDHGA1Q9Y5H4 YPEL5-205ENST00000402708 1735 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
PCDHGA1Q9Y5H4 DENND6A-201ENST00000311128 4655 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
PCDHGA1Q9Y5H4 SCYL2-201ENST00000360820 5779 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
PCDHGA1Q9Y5H4 HLA-G-205ENST00000428701 1578 ntAPPRIS P2 BASIC18.51■□□□□ 0.55
PCDHGA1Q9Y5H4 NAP1L4-212ENST00000526115 1941 ntTSL 2 BASIC18.51■□□□□ 0.55
PCDHGA1Q9Y5H4 DACT1-204ENST00000541264 2610 ntAPPRIS ALT2 TSL 2 BASIC18.51■□□□□ 0.55
PCDHGA1Q9Y5H4 MSL1-204ENST00000578648 2267 ntTSL 5 BASIC18.51■□□□□ 0.55
PCDHGA1Q9Y5H4 LENG9-203ENST00000611161 1916 ntAPPRIS P1 BASIC18.51■□□□□ 0.55
PCDHGA1Q9Y5H4 BX119927.1-201ENST00000636596 1552 ntBASIC18.51■□□□□ 0.55
PCDHGA1Q9Y5H4 ZNF446-208ENST00000622313 1884 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
PCDHGA1Q9Y5H4 DCTN3-201ENST00000259632 808 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
PCDHGA1Q9Y5H4 CLN3-202ENST00000355477 1173 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
PCDHGA1Q9Y5H4 RPUSD3-201ENST00000383820 1225 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
PCDHGA1Q9Y5H4 EMC9-202ENST00000419198 953 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
PCDHGA1Q9Y5H4 PGAP2-206ENST00000459679 795 ntTSL 2 BASIC18.5■□□□□ 0.55
PCDHGA1Q9Y5H4 FOSL1-203ENST00000531493 1200 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
PCDHGA1Q9Y5H4 FGF14-AS2-201ENST00000606448 1074 ntBASIC18.5■□□□□ 0.55
PCDHGA1Q9Y5H4 BCL10-202ENST00000620248 774 ntTSL 5 BASIC18.5■□□□□ 0.55
PCDHGA1Q9Y5H4 TINAGL1-211ENST00000537531 1841 ntAPPRIS ALT2 TSL 5 BASIC18.5■□□□□ 0.55
PCDHGA1Q9Y5H4 CIRBP-225ENST00000589710 1835 ntTSL 2 BASIC18.5■□□□□ 0.55
PCDHGA1Q9Y5H4 SOCS2-206ENST00000549122 2391 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
PCDHGA1Q9Y5H4 RNF113B-201ENST00000267291 1376 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
PCDHGA1Q9Y5H4 ZDHHC20-201ENST00000320220 1351 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
PCDHGA1Q9Y5H4 KCNIP2-207ENST00000358038 2489 ntAPPRIS ALT1 TSL 1 (best) BASIC18.5■□□□□ 0.55
PCDHGA1Q9Y5H4 PCMT1-203ENST00000367384 1938 ntAPPRIS ALT2 TSL 1 (best) BASIC18.5■□□□□ 0.55
PCDHGA1Q9Y5H4 AGPAT2-205ENST00000538402 1357 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
PCDHGA1Q9Y5H4 AVL9-209ENST00000640103 1367 ntTSL 5 BASIC18.5■□□□□ 0.55
PCDHGA1Q9Y5H4 VSTM2B-201ENST00000335523 1488 ntAPPRIS P1 TSL 5 BASIC18.5■□□□□ 0.55
PCDHGA1Q9Y5H4 SELENOF-207ENST00000611507 1785 ntTSL 5 BASIC18.5■□□□□ 0.55
PCDHGA1Q9Y5H4 ZGPAT-206ENST00000448100 1881 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
PCDHGA1Q9Y5H4 ENOPH1-203ENST00000509635 1874 ntTSL 3 BASIC18.5■□□□□ 0.55
PCDHGA1Q9Y5H4 NDRG2-215ENST00000553503 2162 ntAPPRIS ALT1 TSL 1 (best) BASIC18.49■□□□□ 0.55
PCDHGA1Q9Y5H4 ART1-201ENST00000250693 1312 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
PCDHGA1Q9Y5H4 CYSTM1-201ENST00000261811 1336 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
PCDHGA1Q9Y5H4 OR13J1-201ENST00000377981 1339 ntAPPRIS P1 BASIC18.49■□□□□ 0.55
PCDHGA1Q9Y5H4 C7orf25-201ENST00000350427 2451 ntAPPRIS P1 TSL 2 BASIC18.49■□□□□ 0.55
PCDHGA1Q9Y5H4 MAPRE3-203ENST00000405074 1801 ntTSL 3 BASIC18.49■□□□□ 0.55
PCDHGA1Q9Y5H4 CTU2-210ENST00000567949 1905 ntAPPRIS ALT2 TSL 1 (best) BASIC18.49■□□□□ 0.55
PCDHGA1Q9Y5H4 PAFAH1B3-201ENST00000262890 1003 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
PCDHGA1Q9Y5H4 CHTOP-202ENST00000368687 1094 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
PCDHGA1Q9Y5H4 IFT27-205ENST00000433985 1095 ntAPPRIS ALT1 TSL 1 (best) BASIC18.49■□□□□ 0.55
PCDHGA1Q9Y5H4 AC005056.1-201ENST00000435932 532 ntTSL 4 BASIC18.49■□□□□ 0.55
PCDHGA1Q9Y5H4 LBX1-AS1-203ENST00000454527 740 ntTSL 5 BASIC18.49■□□□□ 0.55
PCDHGA1Q9Y5H4 CNP-204ENST00000472031 1019 ntTSL 2 BASIC18.49■□□□□ 0.55
PCDHGA1Q9Y5H4 IFI27L1-206ENST00000554562 571 ntTSL 3 BASIC18.49■□□□□ 0.55
PCDHGA1Q9Y5H4 JOSD2-204ENST00000598418 996 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
PCDHGA1Q9Y5H4 HMBS-221ENST00000544387 1351 ntTSL 2 BASIC18.49■□□□□ 0.55
PCDHGA1Q9Y5H4 B4GALT5-201ENST00000371711 4722 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
PCDHGA1Q9Y5H4 ARNTL2-204ENST00000395901 1954 ntAPPRIS ALT2 TSL 1 (best) BASIC18.49■□□□□ 0.55
PCDHGA1Q9Y5H4 LPCAT4-201ENST00000314891 2262 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
PCDHGA1Q9Y5H4 OLFM1-204ENST00000371793 2444 ntAPPRIS P1 TSL 3 BASIC18.49■□□□□ 0.55
PCDHGA1Q9Y5H4 STX18-201ENST00000306200 2138 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
PCDHGA1Q9Y5H4 QPCTL-202ENST00000366382 1814 ntTSL 2 BASIC18.49■□□□□ 0.55
PCDHGA1Q9Y5H4 INTS11-209ENST00000450926 1839 ntTSL 5 BASIC18.49■□□□□ 0.55
PCDHGA1Q9Y5H4 TMEM175-220ENST00000515740 1514 ntTSL 3 BASIC18.49■□□□□ 0.55
PCDHGA1Q9Y5H4 SPTBN4-201ENST00000338932 8686 ntAPPRIS ALT1 TSL 5 BASIC18.48■□□□□ 0.55
PCDHGA1Q9Y5H4 INAFM2-202ENST00000638170 3052 ntAPPRIS P1 BASIC18.48■□□□□ 0.55
PCDHGA1Q9Y5H4 APLP1-203ENST00000586861 2052 ntTSL 2 BASIC18.48■□□□□ 0.55
PCDHGA1Q9Y5H4 DMRT2-203ENST00000358146 1965 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
PCDHGA1Q9Y5H4 ZBTB7A-201ENST00000322357 5422 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
PCDHGA1Q9Y5H4 ZDHHC5-204ENST00000527985 2817 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
PCDHGA1Q9Y5H4 SERGEF-201ENST00000265965 1566 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
PCDHGA1Q9Y5H4 PNMA2-204ENST00000522362 4965 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
PCDHGA1Q9Y5H4 INS-201ENST00000250971 503 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
PCDHGA1Q9Y5H4 S100A14-201ENST00000344616 1058 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
PCDHGA1Q9Y5H4 EFCAB2-203ENST00000366523 1233 ntAPPRIS P1 TSL 3 BASIC18.48■□□□□ 0.55
PCDHGA1Q9Y5H4 SYCE1L-201ENST00000378644 858 ntAPPRIS P2 TSL 5 BASIC18.48■□□□□ 0.55
PCDHGA1Q9Y5H4 SMYD3-204ENST00000403792 1209 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
PCDHGA1Q9Y5H4 DMKN-208ENST00000424570 1293 ntAPPRIS ALT2 TSL 1 (best) BASIC18.48■□□□□ 0.55
PCDHGA1Q9Y5H4 AC087623.2-201ENST00000528407 534 ntTSL 4 BASIC18.48■□□□□ 0.55
PCDHGA1Q9Y5H4 AC125616.1-201ENST00000540369 1015 ntTSL 3 BASIC18.48■□□□□ 0.55
PCDHGA1Q9Y5H4 GNS-207ENST00000542058 2020 ntAPPRIS ALT2 TSL 2 BASIC18.48■□□□□ 0.55
PCDHGA1Q9Y5H4 PCSK6-217ENST00000618548 4269 ntAPPRIS ALT2 TSL 1 (best) BASIC18.48■□□□□ 0.55
PCDHGA1Q9Y5H4 NSDHL-201ENST00000370274 1929 ntAPPRIS P2 TSL 1 (best) BASIC18.48■□□□□ 0.55
PCDHGA1Q9Y5H4 GTF2IRD2B-208ENST00000619142 1932 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
PCDHGA1Q9Y5H4 FBXL19-205ENST00000562319 2462 ntAPPRIS ALT2 TSL 2 BASIC18.48■□□□□ 0.55
Retrieved 100 of 98,524 protein–RNA pairs in 28.5 ms