Protein–RNA interactions for Protein: Q9UGP4

LIMD1, LIM domain-containing protein 1, humanhuman

Predictions only

Length 676 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMD1Q9UGP4 IKZF1-209ENST00000438033 1748 ntTSL 2 BASIC20.1■□□□□ 0.81
LIMD1Q9UGP4 JADE2-204ENST00000402835 2797 ntTSL 5 BASIC20.1■□□□□ 0.81
LIMD1Q9UGP4 EMD-202ENST00000369842 1379 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
LIMD1Q9UGP4 JPT1-203ENST00000409753 1605 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
LIMD1Q9UGP4 SMG1P5-201ENST00000411546 2362 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
LIMD1Q9UGP4 SP9-201ENST00000394967 2554 ntAPPRIS P1 TSL 5 BASIC20.09■□□□□ 0.81
LIMD1Q9UGP4 SLC2A8-215ENST00000610552 1763 ntTSL 3 BASIC20.09■□□□□ 0.81
LIMD1Q9UGP4 BX005266.2-202ENST00000446626 2245 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
LIMD1Q9UGP4 SLX1A-202ENST00000345535 762 ntAPPRIS ALT2 TSL 1 (best) BASIC20.09■□□□□ 0.81
LIMD1Q9UGP4 SLX1B-202ENST00000351581 762 ntAPPRIS ALT2 TSL 1 (best) BASIC20.09■□□□□ 0.81
LIMD1Q9UGP4 C21orf91-202ENST00000400558 1090 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
LIMD1Q9UGP4 PRAP1-202ENST00000463201 587 ntAPPRIS ALT2 TSL 1 (best) BASIC20.09■□□□□ 0.81
LIMD1Q9UGP4 AP002433.1-201ENST00000525548 964 ntTSL 3 BASIC20.09■□□□□ 0.81
LIMD1Q9UGP4 AP003041.3-201ENST00000527151 707 ntBASIC20.09■□□□□ 0.81
LIMD1Q9UGP4 AL132780.2-201ENST00000557615 1021 ntTSL 3 BASIC20.09■□□□□ 0.81
LIMD1Q9UGP4 IRF5-214ENST00000613821 595 ntTSL 5 BASIC20.09■□□□□ 0.81
LIMD1Q9UGP4 DFFB-212ENST00000625756 649 ntTSL 5 BASIC20.09■□□□□ 0.81
LIMD1Q9UGP4 NPNT-204ENST00000453617 2419 ntAPPRIS ALT1 TSL 2 BASIC20.09■□□□□ 0.81
LIMD1Q9UGP4 NEK3-208ENST00000618534 2414 ntAPPRIS P2 TSL 5 BASIC20.09■□□□□ 0.81
LIMD1Q9UGP4 MARK3-206ENST00000440884 2643 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
LIMD1Q9UGP4 TMEM179-206ENST00000616017 1645 ntBASIC20.09■□□□□ 0.81
LIMD1Q9UGP4 YDJC-201ENST00000292778 1351 ntAPPRIS P1 TSL 2 BASIC20.08■□□□□ 0.81
LIMD1Q9UGP4 TRAPPC3-209ENST00000616395 1336 ntTSL 3 BASIC20.08■□□□□ 0.81
LIMD1Q9UGP4 LINC01521-201ENST00000504184 1943 ntBASIC20.08■□□□□ 0.81
LIMD1Q9UGP4 ETS1-207ENST00000531611 2134 ntTSL 1 (best) BASIC20.08■□□□□ 0.81
LIMD1Q9UGP4 RXFP3-201ENST00000330120 1852 ntAPPRIS P1 BASIC20.08■□□□□ 0.81
LIMD1Q9UGP4 S100A11-201ENST00000271638 594 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
LIMD1Q9UGP4 TBC1D7-202ENST00000356436 1116 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
LIMD1Q9UGP4 TIMM17B-201ENST00000376582 950 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
LIMD1Q9UGP4 TBC1D7-204ENST00000379300 1276 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
LIMD1Q9UGP4 HDAC11-204ENST00000404040 967 ntTSL 3 BASIC20.08■□□□□ 0.81
LIMD1Q9UGP4 MEF2B-202ENST00000409447 1297 ntTSL 3 BASIC20.08■□□□□ 0.81
LIMD1Q9UGP4 DECR2-202ENST00000424398 1012 ntTSL 5 BASIC20.08■□□□□ 0.81
LIMD1Q9UGP4 AP000347.1-209ENST00000437294 557 ntTSL 4 BASIC20.08■□□□□ 0.81
LIMD1Q9UGP4 CR769775.1-204ENST00000439760 747 ntTSL 5 BASIC20.08■□□□□ 0.81
LIMD1Q9UGP4 AC112907.2-201ENST00000448639 330 ntBASIC20.08■□□□□ 0.81
LIMD1Q9UGP4 CA15P1-201ENST00000481698 905 ntBASIC20.08■□□□□ 0.81
LIMD1Q9UGP4 RNF187-203ENST00000639044 708 ntAPPRIS P2 TSL 1 (best) BASIC20.08■□□□□ 0.81
LIMD1Q9UGP4 KDM2A-202ENST00000398645 6511 ntTSL 1 (best) BASIC20.08■□□□□ 0.8
LIMD1Q9UGP4 APBB1-210ENST00000530885 1626 ntTSL 2 BASIC20.08■□□□□ 0.8
LIMD1Q9UGP4 KRT8P45-201ENST00000414328 1447 ntBASIC20.08■□□□□ 0.8
LIMD1Q9UGP4 ALG1-201ENST00000262374 2132 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.8
LIMD1Q9UGP4 EDEM1-204ENST00000445686 1363 ntTSL 2 BASIC20.08■□□□□ 0.8
LIMD1Q9UGP4 ISM2-207ENST00000493585 1739 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
LIMD1Q9UGP4 UBR2-203ENST00000372903 2423 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
LIMD1Q9UGP4 RCN3-201ENST00000270645 1859 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
LIMD1Q9UGP4 NEUROG1-201ENST00000314744 1668 ntAPPRIS P1 BASIC20.07■□□□□ 0.8
LIMD1Q9UGP4 KCNK6-201ENST00000263372 5722 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
LIMD1Q9UGP4 HNRNPLL-203ENST00000378915 2523 ntTSL 5 BASIC20.07■□□□□ 0.8
LIMD1Q9UGP4 HSD17B10-201ENST00000168216 960 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
LIMD1Q9UGP4 MPG-201ENST00000219431 1193 ntAPPRIS P4 TSL 3 BASIC20.07■□□□□ 0.8
LIMD1Q9UGP4 Telomerase-vert.1-201ENST00000363312 438 ntBASIC20.07■□□□□ 0.8
LIMD1Q9UGP4 TLCD1-202ENST00000394933 784 ntTSL 2 BASIC20.07■□□□□ 0.8
LIMD1Q9UGP4 AC079385.1-201ENST00000551505 570 ntTSL 4 BASIC20.07■□□□□ 0.8
LIMD1Q9UGP4 MRPL46-202ENST00000558531 1002 ntTSL 2 BASIC20.07■□□□□ 0.8
LIMD1Q9UGP4 FXYD7-203ENST00000586063 456 ntAPPRIS ALT2 TSL 3 BASIC20.07■□□□□ 0.8
LIMD1Q9UGP4 SLF2-205ENST00000609386 891 ntAPPRIS ALT2 BASIC20.07■□□□□ 0.8
LIMD1Q9UGP4 AL513523.10-201ENST00000623024 1186 ntAPPRIS P1 TSL 5 BASIC20.07■□□□□ 0.8
LIMD1Q9UGP4 SQSTM1-216ENST00000626660 274 ntTSL 5 BASIC20.07■□□□□ 0.8
LIMD1Q9UGP4 T-202ENST00000366871 2250 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
LIMD1Q9UGP4 GABRA2-214ENST00000515082 2366 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
LIMD1Q9UGP4 CDV3-201ENST00000264993 3307 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
LIMD1Q9UGP4 ADRA1B-201ENST00000306675 2047 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
LIMD1Q9UGP4 DMRTA2-202ENST00000418121 2840 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
LIMD1Q9UGP4 KLF14-201ENST00000583337 2827 ntAPPRIS P1 BASIC20.07■□□□□ 0.8
LIMD1Q9UGP4 SNHG10-201ENST00000500370 1531 ntTSL 2 BASIC20.07■□□□□ 0.8
LIMD1Q9UGP4 NAGK-229ENST00000613852 1801 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
LIMD1Q9UGP4 SOX21-201ENST00000376945 2778 ntAPPRIS P1 BASIC20.06■□□□□ 0.8
LIMD1Q9UGP4 CENPX-201ENST00000306704 751 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
LIMD1Q9UGP4 MRPL43-205ENST00000370234 798 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
LIMD1Q9UGP4 CA7-202ENST00000394069 1713 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
LIMD1Q9UGP4 MRPL53-202ENST00000409710 386 ntTSL 2 BASIC20.06■□□□□ 0.8
LIMD1Q9UGP4 AC012618.3-203ENST00000426044 917 ntTSL 2 BASIC20.06■□□□□ 0.8
LIMD1Q9UGP4 ST6GALNAC4P1-201ENST00000435385 499 ntBASIC20.06■□□□□ 0.8
LIMD1Q9UGP4 TRIM73-203ENST00000437796 1169 ntAPPRIS P2 TSL 1 (best) BASIC20.06■□□□□ 0.8
LIMD1Q9UGP4 AL162258.2-202ENST00000469931 831 ntTSL 5 BASIC20.06■□□□□ 0.8
LIMD1Q9UGP4 TMEM110-MUSTN1-202ENST00000504329 1405 ntAPPRIS P1 TSL 5 BASIC20.06■□□□□ 0.8
LIMD1Q9UGP4 ZNF444P1-201ENST00000559497 298 ntBASIC20.06■□□□□ 0.8
LIMD1Q9UGP4 AL160286.2-201ENST00000567150 934 ntBASIC20.06■□□□□ 0.8
LIMD1Q9UGP4 AC016582.2-201ENST00000591908 446 ntTSL 3 BASIC20.06■□□□□ 0.8
LIMD1Q9UGP4 DLEU2-208ENST00000621282 3068 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
LIMD1Q9UGP4 TTYH3-201ENST00000258796 4840 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
LIMD1Q9UGP4 MAPRE3-203ENST00000405074 1801 ntTSL 3 BASIC20.06■□□□□ 0.8
LIMD1Q9UGP4 EPHX1-201ENST00000272167 1660 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
LIMD1Q9UGP4 TMEM204-202ENST00000566264 1938 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
LIMD1Q9UGP4 NYAP1-202ENST00000454988 2777 ntTSL 5 BASIC20.06■□□□□ 0.8
LIMD1Q9UGP4 MAP2K5-203ENST00000354498 1783 ntTSL 2 BASIC20.06■□□□□ 0.8
LIMD1Q9UGP4 NSUN2-206ENST00000506139 2619 ntAPPRIS ALT2 TSL 2 BASIC20.06■□□□□ 0.8
LIMD1Q9UGP4 DMKN-207ENST00000419602 1496 ntAPPRIS ALT2 TSL 1 (best) BASIC20.05■□□□□ 0.8
LIMD1Q9UGP4 ALDH3B1-206ENST00000615463 1300 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
LIMD1Q9UGP4 HFE2-202ENST00000357836 2123 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
LIMD1Q9UGP4 SLC35A3-222ENST00000640715 1989 ntTSL 5 BASIC20.05■□□□□ 0.8
LIMD1Q9UGP4 IL17RC-202ENST00000383812 2384 ntAPPRIS ALT2 TSL 1 (best) BASIC20.05■□□□□ 0.8
LIMD1Q9UGP4 KRT8P8-201ENST00000434750 1448 ntBASIC20.05■□□□□ 0.8
LIMD1Q9UGP4 TMED4-201ENST00000289577 2203 ntTSL 2 BASIC20.05■□□□□ 0.8
LIMD1Q9UGP4 TNIP1-205ENST00000518977 2200 ntAPPRIS ALT2 TSL 1 (best) BASIC20.05■□□□□ 0.8
LIMD1Q9UGP4 CLN5-201ENST00000377453 2629 ntAPPRIS ALT2 TSL 1 (best) BASIC20.05■□□□□ 0.8
LIMD1Q9UGP4 INS-201ENST00000250971 503 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
LIMD1Q9UGP4 PSEN1-203ENST00000394157 1249 ntTSL 2 BASIC20.05■□□□□ 0.8
LIMD1Q9UGP4 DHRS4-203ENST00000397075 727 ntTSL 2 BASIC20.05■□□□□ 0.8
Retrieved 100 of 98,524 protein–RNA pairs in 16.8 ms