Protein–RNA interactions for Protein: Q9NZC9

SMARCAL1, SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A-like protein 1, humanhuman

Predictions only

Length 954 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCAL1Q9NZC9 CDHR1-201ENST00000332904 2694 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
SMARCAL1Q9NZC9 PPM1G-201ENST00000344034 2311 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
SMARCAL1Q9NZC9 ZNF451-202ENST00000370702 458 ntTSL 2 BASIC20.29■□□□□ 0.84
SMARCAL1Q9NZC9 CLDN3-201ENST00000395145 1274 ntAPPRIS P1 BASIC20.29■□□□□ 0.84
SMARCAL1Q9NZC9 ABHD14A-202ENST00000458031 1113 ntTSL 5 BASIC20.29■□□□□ 0.84
SMARCAL1Q9NZC9 AC012313.6-201ENST00000599889 790 ntTSL 3 BASIC20.29■□□□□ 0.84
SMARCAL1Q9NZC9 MYO19-221ENST00000620640 1186 ntTSL 2 BASIC20.29■□□□□ 0.84
SMARCAL1Q9NZC9 AC008694.1-202ENST00000636953 945 ntBASIC20.29■□□□□ 0.84
SMARCAL1Q9NZC9 SEPT8-201ENST00000296873 4394 ntAPPRIS P2 TSL 1 (best) BASIC20.29■□□□□ 0.84
SMARCAL1Q9NZC9 PGM5-202ENST00000396396 3338 ntAPPRIS P1 TSL 2 BASIC20.29■□□□□ 0.84
SMARCAL1Q9NZC9 ARHGAP27-201ENST00000290470 1376 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
SMARCAL1Q9NZC9 LINC01586-201ENST00000506090 1840 ntTSL 2 BASIC20.29■□□□□ 0.84
SMARCAL1Q9NZC9 LEFTY2-201ENST00000366820 2287 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
SMARCAL1Q9NZC9 TFP1-202ENST00000475455 1573 ntBASIC20.29■□□□□ 0.84
SMARCAL1Q9NZC9 TRIM63-201ENST00000374272 1770 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
SMARCAL1Q9NZC9 PRR5-201ENST00000006251 1767 ntTSL 2 BASIC20.29■□□□□ 0.84
SMARCAL1Q9NZC9 ROCK2-202ENST00000315872 8292 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
SMARCAL1Q9NZC9 CRHR2-207ENST00000471646 2530 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
SMARCAL1Q9NZC9 HOXD10-201ENST00000249501 1989 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
SMARCAL1Q9NZC9 L2HGDH-203ENST00000421284 1958 ntAPPRIS P1 TSL 2 BASIC20.28■□□□□ 0.84
SMARCAL1Q9NZC9 PADI2-201ENST00000375481 1607 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
SMARCAL1Q9NZC9 AC012414.5-201ENST00000564214 1602 ntTSL 5 BASIC20.28■□□□□ 0.84
SMARCAL1Q9NZC9 ZFP92-201ENST00000338647 6105 ntAPPRIS P1 TSL 5 BASIC20.28■□□□□ 0.84
SMARCAL1Q9NZC9 MRM3-201ENST00000304478 1809 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
SMARCAL1Q9NZC9 AC026185.1-201ENST00000445748 174 ntBASIC20.28■□□□□ 0.84
SMARCAL1Q9NZC9 ANAPC11-208ENST00000572851 686 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
SMARCAL1Q9NZC9 PDLIM2-221ENST00000622702 1490 ntTSL 5 BASIC20.28■□□□□ 0.84
SMARCAL1Q9NZC9 TBXAS1-204ENST00000416849 2505 ntTSL 5 BASIC20.28■□□□□ 0.84
SMARCAL1Q9NZC9 NAA35-201ENST00000361671 2649 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
SMARCAL1Q9NZC9 RAB34-203ENST00000395243 1597 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
SMARCAL1Q9NZC9 FUT4-201ENST00000358752 6059 ntAPPRIS P1 BASIC20.28■□□□□ 0.84
SMARCAL1Q9NZC9 EVI5L-201ENST00000270530 3855 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
SMARCAL1Q9NZC9 BSG-201ENST00000333511 1974 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
SMARCAL1Q9NZC9 SNAI3-AS1-202ENST00000563475 2081 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
SMARCAL1Q9NZC9 PARP15-202ENST00000464300 2156 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
SMARCAL1Q9NZC9 CBS-203ENST00000398158 2453 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
SMARCAL1Q9NZC9 CBSL-206ENST00000624406 2453 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
SMARCAL1Q9NZC9 CXorf49-202ENST00000535490 1715 ntAPPRIS P1 TSL 5 BASIC20.27■□□□□ 0.84
SMARCAL1Q9NZC9 CXorf49B-202ENST00000542739 1715 ntAPPRIS P1 TSL 5 BASIC20.27■□□□□ 0.84
SMARCAL1Q9NZC9 TLX1-201ENST00000370196 2906 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
SMARCAL1Q9NZC9 JAKMIP1-202ENST00000409021 2975 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
SMARCAL1Q9NZC9 HNRNPUL1-203ENST00000378215 2864 ntTSL 2 BASIC20.27■□□□□ 0.84
SMARCAL1Q9NZC9 HBEGF-201ENST00000230990 2386 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
SMARCAL1Q9NZC9 ATPAF2-206ENST00000474627 1564 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
SMARCAL1Q9NZC9 CENPN-201ENST00000299572 1398 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
SMARCAL1Q9NZC9 RWDD4-206ENST00000512740 1393 ntTSL 5 BASIC20.27■□□□□ 0.84
SMARCAL1Q9NZC9 DCXR-201ENST00000306869 887 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
SMARCAL1Q9NZC9 SLC22A15-201ENST00000369502 1230 ntTSL 2 BASIC20.27■□□□□ 0.84
SMARCAL1Q9NZC9 PPA1-202ENST00000373232 1295 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
SMARCAL1Q9NZC9 DIMT1-202ENST00000506390 1208 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
SMARCAL1Q9NZC9 NOV-201ENST00000259526 2522 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
SMARCAL1Q9NZC9 AATF-208ENST00000619387 2141 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
SMARCAL1Q9NZC9 TRIP4-201ENST00000261884 2045 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
SMARCAL1Q9NZC9 KDM1A-202ENST00000400181 3059 ntAPPRIS ALT2 TSL 1 (best) BASIC20.27■□□□□ 0.84
SMARCAL1Q9NZC9 WNT6-201ENST00000233948 1703 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.83
SMARCAL1Q9NZC9 ARPC4-201ENST00000397261 2582 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.83
SMARCAL1Q9NZC9 LINC01505-207ENST00000637185 1540 ntTSL 5 BASIC20.27■□□□□ 0.83
SMARCAL1Q9NZC9 KDM5C-203ENST00000375383 5122 ntAPPRIS ALT2 TSL 5 BASIC20.27■□□□□ 0.83
SMARCAL1Q9NZC9 AL512353.2-201ENST00000448759 1962 ntBASIC20.26■□□□□ 0.83
SMARCAL1Q9NZC9 PACSIN2-203ENST00000402229 1883 ntAPPRIS P1 TSL 5 BASIC20.26■□□□□ 0.83
SMARCAL1Q9NZC9 MAF1-201ENST00000322428 1677 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
SMARCAL1Q9NZC9 TBX2-201ENST00000240328 3339 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
SMARCAL1Q9NZC9 ANKRD2-201ENST00000298808 1350 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
SMARCAL1Q9NZC9 PCDHB18P-201ENST00000524813 2368 ntBASIC20.26■□□□□ 0.83
SMARCAL1Q9NZC9 ANKMY1-209ENST00000405523 1827 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
SMARCAL1Q9NZC9 FAM72A-203ENST00000367129 676 ntTSL 3 BASIC20.26■□□□□ 0.83
SMARCAL1Q9NZC9 GPX1P1-201ENST00000388829 606 ntBASIC20.26■□□□□ 0.83
SMARCAL1Q9NZC9 LINC01117-201ENST00000443670 699 ntTSL 5 BASIC20.26■□□□□ 0.83
SMARCAL1Q9NZC9 FAM72A-205ENST00000468509 629 ntTSL 5 BASIC20.26■□□□□ 0.83
SMARCAL1Q9NZC9 ZNF302-209ENST00000507959 854 ntTSL 2 BASIC20.26■□□□□ 0.83
SMARCAL1Q9NZC9 MZT1-201ENST00000377818 2299 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
SMARCAL1Q9NZC9 FZD10-202ENST00000539839 3282 ntBASIC20.26■□□□□ 0.83
SMARCAL1Q9NZC9 SLC25A47-201ENST00000361529 1738 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
SMARCAL1Q9NZC9 ZNF385A-202ENST00000352268 2076 ntTSL 2 BASIC20.26■□□□□ 0.83
SMARCAL1Q9NZC9 FLT1-207ENST00000615840 6453 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
SMARCAL1Q9NZC9 NR4A2-204ENST00000409572 2878 ntAPPRIS P1 TSL 5 BASIC20.26■□□□□ 0.83
SMARCAL1Q9NZC9 RIMKLB-202ENST00000357529 5830 ntAPPRIS P1 TSL 5 BASIC20.26■□□□□ 0.83
SMARCAL1Q9NZC9 TRABD-201ENST00000303434 2329 ntAPPRIS P3 TSL 1 (best) BASIC20.26■□□□□ 0.83
SMARCAL1Q9NZC9 APAF1-210ENST00000551964 5444 ntAPPRIS P4 TSL 1 (best) BASIC20.26■□□□□ 0.83
SMARCAL1Q9NZC9 LIN28B-AS1-203ENST00000636682 1797 ntTSL 3 BASIC20.26■□□□□ 0.83
SMARCAL1Q9NZC9 KRT8-216ENST00000552551 2126 ntAPPRIS P1 TSL 2 BASIC20.26■□□□□ 0.83
SMARCAL1Q9NZC9 ROR1-201ENST00000371079 5832 ntAPPRIS P2 TSL 1 (best) BASIC20.26■□□□□ 0.83
SMARCAL1Q9NZC9 MAP6-201ENST00000304771 3334 ntAPPRIS P3 TSL 1 (best) BASIC20.25■□□□□ 0.83
SMARCAL1Q9NZC9 SLC47A2-201ENST00000325411 2258 ntAPPRIS P3 TSL 1 (best) BASIC20.25■□□□□ 0.83
SMARCAL1Q9NZC9 TMEM263-204ENST00000548125 3349 ntAPPRIS P1 TSL 2 BASIC20.25■□□□□ 0.83
SMARCAL1Q9NZC9 ATRIP-202ENST00000346691 2509 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
SMARCAL1Q9NZC9 BANP-202ENST00000355022 2164 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
SMARCAL1Q9NZC9 AC124283.5-201ENST00000624661 1809 ntBASIC20.25■□□□□ 0.83
SMARCAL1Q9NZC9 PTK6-201ENST00000217185 2401 ntTSL 2 BASIC20.25■□□□□ 0.83
SMARCAL1Q9NZC9 MMD2-202ENST00000404774 2415 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
SMARCAL1Q9NZC9 PRMT2-203ENST00000355680 2688 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
SMARCAL1Q9NZC9 ABHD14A-ACY1-202ENST00000463937 1705 ntAPPRIS ALT2 TSL 5 BASIC20.25■□□□□ 0.83
SMARCAL1Q9NZC9 GALNT16-204ENST00000553669 1629 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
SMARCAL1Q9NZC9 PLK3-201ENST00000372201 2492 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
SMARCAL1Q9NZC9 AP001351.1-201ENST00000501397 1865 ntTSL 2 BASIC20.25■□□□□ 0.83
SMARCAL1Q9NZC9 MTHFS-201ENST00000258874 907 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
SMARCAL1Q9NZC9 CALM3-202ENST00000391918 702 ntTSL 2 BASIC20.25■□□□□ 0.83
SMARCAL1Q9NZC9 EIF5A-205ENST00000419711 1271 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
SMARCAL1Q9NZC9 FBXL8-203ENST00000518148 1054 ntTSL 2 BASIC20.25■□□□□ 0.83
SMARCAL1Q9NZC9 IL34-204ENST00000566361 1001 ntAPPRIS ALT2 TSL 1 (best) BASIC20.25■□□□□ 0.83
Retrieved 100 of 98,524 protein–RNA pairs in 48.1 ms