Protein–RNA interactions for Protein: Q8N4P3

HDDC3, Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase MESH1, humanhuman

Predictions only

Length 179 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3Q8N4P3 AC012618.3-202ENST00000440004 472 ntTSL 4 BASIC19.33■□□□□ 0.68
HDDC3Q8N4P3 HIGD1A-204ENST00000452906 585 ntTSL 2 BASIC19.33■□□□□ 0.68
HDDC3Q8N4P3 AC092647.4-201ENST00000457211 535 ntBASIC19.33■□□□□ 0.68
HDDC3Q8N4P3 CXXC5-AS1-201ENST00000514287 577 ntTSL 4 BASIC19.33■□□□□ 0.68
HDDC3Q8N4P3 SHBG-215ENST00000575903 1196 ntTSL 3 BASIC19.33■□□□□ 0.68
HDDC3Q8N4P3 BVES-AS1-203ENST00000580511 853 ntTSL 5 BASIC19.33■□□□□ 0.68
HDDC3Q8N4P3 TXNL4A-211ENST00000592837 611 ntTSL 2 BASIC19.33■□□□□ 0.68
HDDC3Q8N4P3 SPINK2-207ENST00000631082 392 ntTSL 5 BASIC19.33■□□□□ 0.68
HDDC3Q8N4P3 NDOR1-201ENST00000344894 1794 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
HDDC3Q8N4P3 ANKLE1-204ENST00000594072 2294 ntTSL 5 BASIC19.33■□□□□ 0.68
HDDC3Q8N4P3 ZDHHC17-201ENST00000426126 5259 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
HDDC3Q8N4P3 CIZ1-204ENST00000372938 2984 ntAPPRIS P3 TSL 1 (best) BASIC19.33■□□□□ 0.68
HDDC3Q8N4P3 AL606970.3-201ENST00000446811 2246 ntTSL 2 BASIC19.33■□□□□ 0.68
HDDC3Q8N4P3 ABHD14A-ACY1-202ENST00000463937 1705 ntAPPRIS ALT2 TSL 5 BASIC19.33■□□□□ 0.68
HDDC3Q8N4P3 GMPPA-213ENST00000622191 1473 ntTSL 5 BASIC19.33■□□□□ 0.68
HDDC3Q8N4P3 TCP11-202ENST00000311875 2166 ntAPPRIS ALT2 TSL 1 (best) BASIC19.33■□□□□ 0.68
HDDC3Q8N4P3 KRAS-203ENST00000556131 1696 ntTSL 1 (best) BASIC19.33■□□□□ 0.68
HDDC3Q8N4P3 ARID4B-203ENST00000366603 5946 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
HDDC3Q8N4P3 FDXR-201ENST00000293195 1875 ntAPPRIS ALT1 TSL 1 (best) BASIC19.33■□□□□ 0.68
HDDC3Q8N4P3 ENOPH1-203ENST00000509635 1874 ntTSL 3 BASIC19.33■□□□□ 0.68
HDDC3Q8N4P3 MLF2-202ENST00000435120 1379 ntAPPRIS P1 TSL 2 BASIC19.32■□□□□ 0.68
HDDC3Q8N4P3 TP53RK-201ENST00000372102 2012 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
HDDC3Q8N4P3 AC008060.1-201ENST00000401499 1551 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
HDDC3Q8N4P3 GPRC5C-205ENST00000481232 1592 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
HDDC3Q8N4P3 PCSK6-217ENST00000618548 4269 ntAPPRIS ALT2 TSL 1 (best) BASIC19.32■□□□□ 0.68
HDDC3Q8N4P3 KLHDC1-201ENST00000359332 2691 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
HDDC3Q8N4P3 ZNF331-202ENST00000411977 2248 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
HDDC3Q8N4P3 MAML1-201ENST00000292599 5723 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
HDDC3Q8N4P3 GABBR1-202ENST00000376977 1739 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
HDDC3Q8N4P3 EARS2-206ENST00000563232 1709 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
HDDC3Q8N4P3 FAM57B-204ENST00000564806 1710 ntTSL 2 BASIC19.32■□□□□ 0.68
HDDC3Q8N4P3 DUSP5-201ENST00000369583 2557 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
HDDC3Q8N4P3 REM2-201ENST00000267396 1923 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
HDDC3Q8N4P3 PPP5C-202ENST00000391919 1929 ntTSL 5 BASIC19.32■□□□□ 0.68
HDDC3Q8N4P3 AIF1L-203ENST00000372298 849 ntTSL 3 BASIC19.32■□□□□ 0.68
HDDC3Q8N4P3 RNF152P1-201ENST00000397754 604 ntBASIC19.32■□□□□ 0.68
HDDC3Q8N4P3 TPM4P1-201ENST00000436100 807 ntBASIC19.32■□□□□ 0.68
HDDC3Q8N4P3 AC007663.1-201ENST00000438948 1240 ntBASIC19.32■□□□□ 0.68
HDDC3Q8N4P3 IMMP2L-207ENST00000452895 833 ntAPPRIS P1 TSL 5 BASIC19.32■□□□□ 0.68
HDDC3Q8N4P3 LINC01293-201ENST00000453951 1266 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
HDDC3Q8N4P3 AL929554.1-201ENST00000568665 460 ntAPPRIS P1 TSL 3 BASIC19.32■□□□□ 0.68
HDDC3Q8N4P3 DBP-204ENST00000599385 709 ntTSL 3 BASIC19.32■□□□□ 0.68
HDDC3Q8N4P3 ASRGL1-211ENST00000628829 1161 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
HDDC3Q8N4P3 PDLIM2-205ENST00000397761 1491 ntAPPRIS P1 TSL 5 BASIC19.32■□□□□ 0.68
HDDC3Q8N4P3 NUBP2-201ENST00000262302 1413 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
HDDC3Q8N4P3 AC112907.3-201ENST00000577781 2400 ntBASIC19.32■□□□□ 0.68
HDDC3Q8N4P3 SSH1-209ENST00000551165 2354 ntAPPRIS ALT2 TSL 1 (best) BASIC19.32■□□□□ 0.68
HDDC3Q8N4P3 CYP46A1-202ENST00000380228 1597 ntTSL 2 BASIC19.32■□□□□ 0.68
HDDC3Q8N4P3 ZNF346-209ENST00000512315 1575 ntTSL 2 BASIC19.32■□□□□ 0.68
HDDC3Q8N4P3 DBX1-201ENST00000524983 1380 ntAPPRIS P1 TSL 5 BASIC19.32■□□□□ 0.68
HDDC3Q8N4P3 SYTL1-201ENST00000318074 1900 ntTSL 2 BASIC19.31■□□□□ 0.68
HDDC3Q8N4P3 SENP5-204ENST00000445299 2491 ntTSL 2 BASIC19.31■□□□□ 0.68
HDDC3Q8N4P3 NEU4-205ENST00000407683 2273 ntAPPRIS P1 TSL 2 BASIC19.31■□□□□ 0.68
HDDC3Q8N4P3 RTBDN-201ENST00000322912 1328 ntAPPRIS P3 TSL 1 (best) BASIC19.31■□□□□ 0.68
HDDC3Q8N4P3 HSD11B1L-221ENST00000583928 1319 ntTSL 5 BASIC19.31■□□□□ 0.68
HDDC3Q8N4P3 DLEU7-201ENST00000400393 2092 ntAPPRIS P3 TSL 1 (best) BASIC19.31■□□□□ 0.68
HDDC3Q8N4P3 SCYL2-201ENST00000360820 5779 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
HDDC3Q8N4P3 HSPB6-201ENST00000004982 1457 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
HDDC3Q8N4P3 KLF2-201ENST00000248071 2018 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
HDDC3Q8N4P3 MAG-202ENST00000392213 2390 ntAPPRIS P4 TSL 1 (best) BASIC19.31■□□□□ 0.68
HDDC3Q8N4P3 NDUFA1-201ENST00000371437 766 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
HDDC3Q8N4P3 AC117947.1-201ENST00000427448 529 ntBASIC19.31■□□□□ 0.68
HDDC3Q8N4P3 AC007563.2-201ENST00000447289 552 ntTSL 5 BASIC19.31■□□□□ 0.68
HDDC3Q8N4P3 RAB6A-207ENST00000541588 758 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
HDDC3Q8N4P3 TESMIN-209ENST00000544963 1235 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
HDDC3Q8N4P3 RNF165-206ENST00000590330 1049 ntTSL 2 BASIC19.31■□□□□ 0.68
HDDC3Q8N4P3 ZNF575-205ENST00000601282 1086 ntAPPRIS P1 TSL 2 BASIC19.31■□□□□ 0.68
HDDC3Q8N4P3 SLC1A5-203ENST00000542575 2882 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
HDDC3Q8N4P3 MED17-221ENST00000639724 2317 ntTSL 5 BASIC19.31■□□□□ 0.68
HDDC3Q8N4P3 GFI1-203ENST00000427103 2693 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
HDDC3Q8N4P3 STX18-201ENST00000306200 2138 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
HDDC3Q8N4P3 PIF1-202ENST00000333425 2278 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
HDDC3Q8N4P3 ACAP3-201ENST00000353662 2280 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
HDDC3Q8N4P3 MFSD10-205ENST00000507555 1573 ntTSL 5 BASIC19.31■□□□□ 0.68
HDDC3Q8N4P3 JADE2-204ENST00000402835 2797 ntTSL 5 BASIC19.31■□□□□ 0.68
HDDC3Q8N4P3 RPS6KB2-201ENST00000312629 1733 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
HDDC3Q8N4P3 YPEL5-205ENST00000402708 1735 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
HDDC3Q8N4P3 ANXA8L1-203ENST00000613703 1874 ntTSL 2 BASIC19.31■□□□□ 0.68
HDDC3Q8N4P3 LZTS3-201ENST00000329152 5257 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
HDDC3Q8N4P3 SLC25A24-204ENST00000569674 2357 ntBASIC19.3■□□□□ 0.68
HDDC3Q8N4P3 HDAC4-201ENST00000345617 8976 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
HDDC3Q8N4P3 KIAA0895-204ENST00000415803 2865 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
HDDC3Q8N4P3 FAM131A-204ENST00000418281 1664 ntTSL 5 BASIC19.3■□□□□ 0.68
HDDC3Q8N4P3 PHOSPHO1-202ENST00000413580 2173 ntTSL 2 BASIC19.3■□□□□ 0.68
HDDC3Q8N4P3 ENTPD8-201ENST00000344119 2111 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
HDDC3Q8N4P3 DOC2A-209ENST00000564979 1630 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
HDDC3Q8N4P3 ROCK2-202ENST00000315872 8292 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
HDDC3Q8N4P3 GLIPR2-203ENST00000396613 1917 ntTSL 4 BASIC19.3■□□□□ 0.68
HDDC3Q8N4P3 MRPL54-201ENST00000330133 626 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
HDDC3Q8N4P3 PTGDS-202ENST00000371625 807 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
HDDC3Q8N4P3 LINC01381-201ENST00000431650 466 ntTSL 3 BASIC19.3■□□□□ 0.68
HDDC3Q8N4P3 SAPCD2P2-201ENST00000431719 1174 ntBASIC19.3■□□□□ 0.68
HDDC3Q8N4P3 CT47A1-201ENST00000433030 1288 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
HDDC3Q8N4P3 TSPY17P-201ENST00000450329 467 ntBASIC19.3■□□□□ 0.68
HDDC3Q8N4P3 GPHA2-202ENST00000532246 466 ntTSL 3 BASIC19.3■□□□□ 0.68
HDDC3Q8N4P3 KRT126P-201ENST00000549467 1181 ntBASIC19.3■□□□□ 0.68
HDDC3Q8N4P3 CKBP1-201ENST00000565489 1086 ntBASIC19.3■□□□□ 0.68
HDDC3Q8N4P3 AL023803.3-201ENST00000615559 522 ntBASIC19.3■□□□□ 0.68
HDDC3Q8N4P3 AC010653.2-201ENST00000623505 997 ntBASIC19.3■□□□□ 0.68
HDDC3Q8N4P3 NAA60-235ENST00000576916 1567 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
Retrieved 100 of 98,524 protein–RNA pairs in 32.7 ms