Protein–RNA interactions for Protein: Q12948

FOXC1, Forkhead box protein C1, humanhuman

Predictions only

Length 553 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXC1Q12948 TMEM165-201ENST00000381334 1928 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
FOXC1Q12948 FASTK-201ENST00000297532 1827 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
FOXC1Q12948 CCDC134-201ENST00000255784 1270 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
FOXC1Q12948 RWDD3-202ENST00000370202 1235 ntAPPRIS P1 TSL 3 BASIC18.22■□□□□ 0.51
FOXC1Q12948 OLFM1-207ENST00000371801 568 ntTSL 2 BASIC18.22■□□□□ 0.51
FOXC1Q12948 SCRN1-203ENST00000409570 535 ntTSL 4 BASIC18.22■□□□□ 0.51
FOXC1Q12948 SLC9A3R1-202ENST00000413388 1285 ntTSL 2 BASIC18.22■□□□□ 0.51
FOXC1Q12948 PITPNA-AS1-201ENST00000425081 542 ntTSL 2 BASIC18.22■□□□□ 0.51
FOXC1Q12948 AC104758.1-202ENST00000568184 602 ntTSL 3 BASIC18.22■□□□□ 0.51
FOXC1Q12948 HLX-201ENST00000366903 2280 ntAPPRIS P2 TSL 1 (best) BASIC18.22■□□□□ 0.51
FOXC1Q12948 AL161756.1-202ENST00000359491 1717 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
FOXC1Q12948 DOK1-203ENST00000409429 1955 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
FOXC1Q12948 FP700111.2-201ENST00000619190 1892 ntBASIC18.22■□□□□ 0.51
FOXC1Q12948 ELOA-201ENST00000418390 5154 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
FOXC1Q12948 SLC35A3-224ENST00000640732 1777 ntTSL 5 BASIC18.22■□□□□ 0.51
FOXC1Q12948 TAX1BP3-202ENST00000611779 1302 ntTSL 2 BASIC18.22■□□□□ 0.51
FOXC1Q12948 KLHDC4-204ENST00000353170 1663 ntAPPRIS ALT2 TSL 1 (best) BASIC18.22■□□□□ 0.51
FOXC1Q12948 GORAB-201ENST00000367762 1699 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
FOXC1Q12948 WWOX-205ENST00000539474 1670 ntTSL 5 BASIC18.22■□□□□ 0.51
FOXC1Q12948 AC124066.1-201ENST00000581122 1660 ntTSL 5 BASIC18.22■□□□□ 0.51
FOXC1Q12948 RNPEP-202ENST00000367286 2282 ntTSL 5 BASIC18.21■□□□□ 0.51
FOXC1Q12948 NAE1-203ENST00000379463 1909 ntTSL 2 BASIC18.21■□□□□ 0.51
FOXC1Q12948 HAUS4-217ENST00000555367 1454 ntTSL 5 BASIC18.21■□□□□ 0.51
FOXC1Q12948 MAGI2-212ENST00000626691 4599 ntTSL 5 BASIC18.21■□□□□ 0.51
FOXC1Q12948 GTPBP8-203ENST00000383678 1360 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
FOXC1Q12948 PITHD1-201ENST00000246151 1603 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
FOXC1Q12948 RAMP1-201ENST00000254661 910 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
FOXC1Q12948 MIR202HG-201ENST00000300167 384 ntTSL 2 BASIC18.21■□□□□ 0.51
FOXC1Q12948 PAQR6-202ENST00000335852 2117 ntTSL 2 BASIC18.21■□□□□ 0.51
FOXC1Q12948 CHMP3-203ENST00000409225 1099 ntTSL 2 BASIC18.21■□□□□ 0.51
FOXC1Q12948 BX842568.4-201ENST00000421222 227 ntBASIC18.21■□□□□ 0.51
FOXC1Q12948 LINC01770-202ENST00000430109 510 ntTSL 3 BASIC18.21■□□□□ 0.51
FOXC1Q12948 RPL29-202ENST00000466397 742 ntAPPRIS P1 TSL 2 BASIC18.21■□□□□ 0.51
FOXC1Q12948 ZBP1-208ENST00000541799 1041 ntAPPRIS ALT2 TSL 5 BASIC18.21■□□□□ 0.51
FOXC1Q12948 AC079031.1-201ENST00000542627 1035 ntTSL 3 BASIC18.21■□□□□ 0.51
FOXC1Q12948 AC011773.3-202ENST00000549291 790 ntTSL 3 BASIC18.21■□□□□ 0.51
FOXC1Q12948 AC099336.1-202ENST00000602961 463 ntBASIC18.21■□□□□ 0.51
FOXC1Q12948 SCN5A-214ENST00000612060 714 ntTSL 5 BASIC18.21■□□□□ 0.51
FOXC1Q12948 IL17RC-202ENST00000383812 2384 ntAPPRIS ALT2 TSL 1 (best) BASIC18.21■□□□□ 0.51
FOXC1Q12948 C6orf203-202ENST00000405204 1420 ntAPPRIS P1 TSL 2 BASIC18.21■□□□□ 0.51
FOXC1Q12948 RNF19B-202ENST00000356990 2598 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
FOXC1Q12948 NAPEPLD-208ENST00000427257 1822 ntAPPRIS P1 TSL 2 BASIC18.21■□□□□ 0.51
FOXC1Q12948 CIRBP-225ENST00000589710 1835 ntTSL 2 BASIC18.21■□□□□ 0.51
FOXC1Q12948 PEX5-205ENST00000420616 2477 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.5
FOXC1Q12948 ARNTL2-204ENST00000395901 1954 ntAPPRIS ALT2 TSL 1 (best) BASIC18.21■□□□□ 0.5
FOXC1Q12948 OGG1-205ENST00000344629 1744 ntAPPRIS ALT2 TSL 1 (best) BASIC18.2■□□□□ 0.5
FOXC1Q12948 IKZF1-209ENST00000438033 1748 ntTSL 2 BASIC18.2■□□□□ 0.5
FOXC1Q12948 TBC1D3P2-202ENST00000577902 1649 ntBASIC18.2■□□□□ 0.5
FOXC1Q12948 GULP1-206ENST00000409830 1376 ntAPPRIS P3 TSL 1 (best) BASIC18.2■□□□□ 0.5
FOXC1Q12948 GAMT-202ENST00000447102 1769 ntTSL 2 BASIC18.2■□□□□ 0.5
FOXC1Q12948 RGS3-232ENST00000620489 1503 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
FOXC1Q12948 DONSON-210ENST00000453626 2332 ntTSL 5 BASIC18.2■□□□□ 0.5
FOXC1Q12948 CD37-204ENST00000535669 1674 ntTSL 2 BASIC18.2■□□□□ 0.5
FOXC1Q12948 MIR940-201ENST00000401276 94 ntBASIC18.2■□□□□ 0.5
FOXC1Q12948 CRELD2-202ENST00000403427 1242 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
FOXC1Q12948 MOK-208ENST00000519058 917 ntTSL 2 BASIC18.2■□□□□ 0.5
FOXC1Q12948 MCRIP2-211ENST00000629534 341 ntTSL 2 BASIC18.2■□□□□ 0.5
FOXC1Q12948 BRSK2-215ENST00000544817 1842 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
FOXC1Q12948 LINC00167-201ENST00000530583 1419 ntBASIC18.2■□□□□ 0.5
FOXC1Q12948 CENPU-201ENST00000281453 1998 ntAPPRIS P2 TSL 1 (best) BASIC18.2■□□□□ 0.5
FOXC1Q12948 ACTG1-201ENST00000331925 1994 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
FOXC1Q12948 BRD3-202ENST00000371834 2529 ntAPPRIS ALT2 TSL 1 (best) BASIC18.2■□□□□ 0.5
FOXC1Q12948 PPP5C-201ENST00000012443 2109 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
FOXC1Q12948 PPP3CC-202ENST00000289963 2135 ntAPPRIS ALT1 TSL 1 (best) BASIC18.2■□□□□ 0.5
FOXC1Q12948 ABLIM2-204ENST00000407564 2291 ntAPPRIS ALT2 TSL 1 (best) BASIC18.2■□□□□ 0.5
FOXC1Q12948 EMILIN2-201ENST00000254528 5910 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
FOXC1Q12948 HSPA8-202ENST00000453788 2004 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
FOXC1Q12948 CKMT1A-202ENST00000413453 1911 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
FOXC1Q12948 DMPK-220ENST00000618091 2503 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
FOXC1Q12948 INTS11-209ENST00000450926 1839 ntTSL 5 BASIC18.19■□□□□ 0.5
FOXC1Q12948 RNASEH2A-201ENST00000221486 1165 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
FOXC1Q12948 TMEM8A-201ENST00000250930 2346 ntAPPRIS ALT2 TSL 2 BASIC18.19■□□□□ 0.5
FOXC1Q12948 OTOP1-201ENST00000296358 1864 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
FOXC1Q12948 SPSB3-201ENST00000301717 1449 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
FOXC1Q12948 ETV7-202ENST00000340181 1719 ntAPPRIS P3 TSL 1 (best) BASIC18.19■□□□□ 0.5
FOXC1Q12948 RPL36-201ENST00000347512 707 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
FOXC1Q12948 TLE1-202ENST00000376484 666 ntTSL 3 BASIC18.19■□□□□ 0.5
FOXC1Q12948 PCAT7-201ENST00000452148 1164 ntTSL 2 BASIC18.19■□□□□ 0.5
FOXC1Q12948 AC084032.1-201ENST00000552324 578 ntTSL 4 BASIC18.19■□□□□ 0.5
FOXC1Q12948 GABRG3-206ENST00000555083 1405 ntTSL 2 BASIC18.19■□□□□ 0.5
FOXC1Q12948 AC018521.5-202ENST00000577279 374 ntTSL 3 BASIC18.19■□□□□ 0.5
FOXC1Q12948 AC018521.5-201ENST00000582787 496 ntTSL 2 BASIC18.19■□□□□ 0.5
FOXC1Q12948 TERC-201ENST00000602385 541 ntBASIC18.19■□□□□ 0.5
FOXC1Q12948 AC079602.3-201ENST00000623931 403 ntBASIC18.19■□□□□ 0.5
FOXC1Q12948 ME2-208ENST00000638937 2471 ntTSL 5 BASIC18.19■□□□□ 0.5
FOXC1Q12948 CXXC4-201ENST00000394767 5565 ntAPPRIS P1 TSL 5 BASIC18.19■□□□□ 0.5
FOXC1Q12948 AC084757.3-201ENST00000558061 1943 ntTSL 3 BASIC18.19■□□□□ 0.5
FOXC1Q12948 SDR39U1-206ENST00000553930 1325 ntTSL 5 BASIC18.19■□□□□ 0.5
FOXC1Q12948 CXorf40A-208ENST00000434353 1524 ntAPPRIS ALT1 TSL 5 BASIC18.18■□□□□ 0.5
FOXC1Q12948 TMEM175-220ENST00000515740 1514 ntTSL 3 BASIC18.18■□□□□ 0.5
FOXC1Q12948 AKR1A1-214ENST00000621846 1360 ntAPPRIS P1 TSL 5 BASIC18.18■□□□□ 0.5
FOXC1Q12948 CELF5-201ENST00000292672 1854 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
FOXC1Q12948 ALX3-201ENST00000369792 1859 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
FOXC1Q12948 ENOPH1-203ENST00000509635 1874 ntTSL 3 BASIC18.18■□□□□ 0.5
FOXC1Q12948 RGMA-208ENST00000556658 1889 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
FOXC1Q12948 ANXA8-204ENST00000583911 1874 ntTSL 2 BASIC18.18■□□□□ 0.5
FOXC1Q12948 KRT87P-201ENST00000529785 1700 ntTSL 2 BASIC18.18■□□□□ 0.5
FOXC1Q12948 CHST8-202ENST00000434302 2225 ntAPPRIS P1 TSL 2 BASIC18.18■□□□□ 0.5
FOXC1Q12948 C3orf80-201ENST00000326474 2718 ntAPPRIS P1 BASIC18.18■□□□□ 0.5
FOXC1Q12948 PHKG2-202ENST00000424889 1566 ntTSL 2 BASIC18.18■□□□□ 0.5
Retrieved 100 of 98,524 protein–RNA pairs in 22.1 ms