Protein–RNA interactions for Protein: P53420

COL4A4, Collagen alpha-4(IV) chain, humanhuman

Predicted RBP Predictions only

Length 1,690 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A4P53420 AL645929.1-201ENST00000420084 975 ntBASIC20.68■□□□□ 0.9
COL4A4P53420 CCNG1-208ENST00000510664 994 ntTSL 5 BASIC20.68■□□□□ 0.9
COL4A4P53420 PRSS44-201ENST00000515154 1146 ntBASIC20.68■□□□□ 0.9
COL4A4P53420 AC022150.1-201ENST00000599222 640 ntTSL 3 BASIC20.68■□□□□ 0.9
COL4A4P53420 Metazoa_SRP.33-201ENST00000613468 285 ntBASIC20.68■□□□□ 0.9
COL4A4P53420 EDEM1-204ENST00000445686 1363 ntTSL 2 BASIC20.68■□□□□ 0.9
COL4A4P53420 BYSL-201ENST00000230340 2029 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
COL4A4P53420 TMEM8A-201ENST00000250930 2346 ntAPPRIS ALT2 TSL 2 BASIC20.68■□□□□ 0.9
COL4A4P53420 JAKMIP1-203ENST00000409371 2420 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
COL4A4P53420 CCNYL1-202ENST00000339882 2619 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
COL4A4P53420 TOR1A-201ENST00000351698 2076 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
COL4A4P53420 PRKRA-203ENST00000432031 1344 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
COL4A4P53420 SLC36A1-209ENST00000521925 1621 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
COL4A4P53420 MAG-201ENST00000361922 2426 ntAPPRIS ALT2 TSL 1 (best) BASIC20.68■□□□□ 0.9
COL4A4P53420 PRKG2-207ENST00000628926 2623 ntTSL 2 BASIC20.67■□□□□ 0.9
COL4A4P53420 HSD17B10-201ENST00000168216 960 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
COL4A4P53420 RASGRP2-208ENST00000394428 444 ntTSL 2 BASIC20.67■□□□□ 0.9
COL4A4P53420 AP002433.1-201ENST00000525548 964 ntTSL 3 BASIC20.67■□□□□ 0.9
COL4A4P53420 NEK7-207ENST00000538004 1036 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
COL4A4P53420 AL359399.1-201ENST00000557610 462 ntTSL 3 BASIC20.67■□□□□ 0.9
COL4A4P53420 AC004263.2-201ENST00000617183 678 ntBASIC20.67■□□□□ 0.9
COL4A4P53420 METTL5-207ENST00000410097 1370 ntTSL 2 BASIC20.67■□□□□ 0.9
COL4A4P53420 PPP1R7-207ENST00000407025 1592 ntAPPRIS P1 TSL 5 BASIC20.67■□□□□ 0.9
COL4A4P53420 CPLX3-201ENST00000395018 2082 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
COL4A4P53420 SLC16A10-202ENST00000368851 2508 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
COL4A4P53420 SEMA6B-202ENST00000586965 2034 ntAPPRIS ALT2 TSL 1 (best) BASIC20.67■□□□□ 0.9
COL4A4P53420 LINC01311-201ENST00000565162 1445 ntBASIC20.67■□□□□ 0.9
COL4A4P53420 SYT7-208ENST00000542670 1887 ntTSL 5 BASIC20.67■□□□□ 0.9
COL4A4P53420 SNX3-201ENST00000230085 1755 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
COL4A4P53420 TMEM235-203ENST00000550981 1786 ntTSL 2 BASIC20.67■□□□□ 0.9
COL4A4P53420 TAF7-201ENST00000313368 2334 ntAPPRIS P1 BASIC20.67■□□□□ 0.9
COL4A4P53420 MRPL54-201ENST00000330133 626 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
COL4A4P53420 MRPL53-202ENST00000409710 386 ntTSL 2 BASIC20.67■□□□□ 0.9
COL4A4P53420 CNTD2-203ENST00000513948 787 ntAPPRIS ALT2 TSL 2 BASIC20.67■□□□□ 0.9
COL4A4P53420 AP000721.2-201ENST00000537170 650 ntTSL 4 BASIC20.67■□□□□ 0.9
COL4A4P53420 AL513523.10-201ENST00000623024 1186 ntAPPRIS P1 TSL 5 BASIC20.67■□□□□ 0.9
COL4A4P53420 AL732314.6-201ENST00000627721 484 ntTSL 4 BASIC20.67■□□□□ 0.9
COL4A4P53420 RNF187-203ENST00000639044 708 ntAPPRIS P2 TSL 1 (best) BASIC20.67■□□□□ 0.9
COL4A4P53420 HSPA8-202ENST00000453788 2004 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
COL4A4P53420 DRD2-202ENST00000362072 2789 ntAPPRIS P2 TSL 1 (best) BASIC20.67■□□□□ 0.9
COL4A4P53420 PKMYT1-201ENST00000262300 2171 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
COL4A4P53420 NTMT1-211ENST00000617943 1346 ntTSL 3 BASIC20.66■□□□□ 0.9
COL4A4P53420 RBM45-207ENST00000616198 1788 ntAPPRIS ALT1 TSL 1 (best) BASIC20.66■□□□□ 0.9
COL4A4P53420 MANEAL-202ENST00000373045 2685 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
COL4A4P53420 HOXB6-201ENST00000225648 1660 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
COL4A4P53420 TCF7L1-201ENST00000282111 2968 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
COL4A4P53420 PQLC2-201ENST00000375153 2153 ntAPPRIS P1 TSL 2 BASIC20.66■□□□□ 0.9
COL4A4P53420 HEBP2-201ENST00000367697 844 ntTSL 2 BASIC20.66■□□□□ 0.9
COL4A4P53420 AL603832.1-201ENST00000421943 449 ntTSL 5 BASIC20.66■□□□□ 0.9
COL4A4P53420 STK32A-AS1-201ENST00000504297 863 ntTSL 3 BASIC20.66■□□□□ 0.9
COL4A4P53420 NEK4P2-201ENST00000580004 1012 ntBASIC20.66■□□□□ 0.9
COL4A4P53420 LINC01785-201ENST00000598042 1112 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
COL4A4P53420 AL158151.3-201ENST00000599172 696 ntTSL 5 BASIC20.66■□□□□ 0.9
COL4A4P53420 BCL2L12-208ENST00000600947 633 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
COL4A4P53420 ISG15-203ENST00000624697 788 ntAPPRIS ALT2 TSL 3 BASIC20.66■□□□□ 0.9
COL4A4P53420 TP53I11-223ENST00000627720 195 ntTSL 5 BASIC20.66■□□□□ 0.9
COL4A4P53420 ENTPD8-201ENST00000344119 2111 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
COL4A4P53420 KRT16P6-202ENST00000425692 1426 ntBASIC20.66■□□□□ 0.9
COL4A4P53420 KRT8P8-201ENST00000434750 1448 ntBASIC20.66■□□□□ 0.9
COL4A4P53420 TMEM110-MUSTN1-202ENST00000504329 1405 ntAPPRIS P1 TSL 5 BASIC20.66■□□□□ 0.9
COL4A4P53420 ART1-201ENST00000250693 1312 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
COL4A4P53420 WDSUB1-203ENST00000392796 1812 ntAPPRIS P1 TSL 2 BASIC20.65■□□□□ 0.9
COL4A4P53420 WIPI2-203ENST00000401525 2112 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
COL4A4P53420 TMEM179-206ENST00000616017 1645 ntBASIC20.65■□□□□ 0.9
COL4A4P53420 DBNDD2-202ENST00000360981 1078 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
COL4A4P53420 AP000523.1-201ENST00000398242 1049 ntBASIC20.65■□□□□ 0.9
COL4A4P53420 MAP3K13-213ENST00000454237 526 ntTSL 3 BASIC20.65■□□□□ 0.9
COL4A4P53420 ZNF667-AS1-206ENST00000591797 535 ntTSL 5 BASIC20.65■□□□□ 0.9
COL4A4P53420 STARD3-202ENST00000394250 1949 ntTSL 2 BASIC20.65■□□□□ 0.9
COL4A4P53420 C6orf136-203ENST00000376473 1402 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
COL4A4P53420 BRSK2-215ENST00000544817 1842 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
COL4A4P53420 D2HGDH-201ENST00000321264 2617 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
COL4A4P53420 RAB28-202ENST00000330852 1715 ntAPPRIS ALT1 TSL 1 (best) BASIC20.65■□□□□ 0.9
COL4A4P53420 RNF32-208ENST00000432459 1893 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
COL4A4P53420 PGAP1-204ENST00000409475 2443 ntTSL 2 BASIC20.65■□□□□ 0.9
COL4A4P53420 RPS6KL1-216ENST00000557413 2425 ntAPPRIS P1 TSL 5 BASIC20.65■□□□□ 0.9
COL4A4P53420 TXNRD2-202ENST00000400518 2025 ntAPPRIS ALT2 TSL 1 (best) BASIC20.65■□□□□ 0.9
COL4A4P53420 FAM118A-202ENST00000405673 1612 ntTSL 5 BASIC20.65■□□□□ 0.9
COL4A4P53420 RGS3-232ENST00000620489 1503 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
COL4A4P53420 PLCD1-201ENST00000334661 2769 ntAPPRIS P3 TSL 1 (best) BASIC20.65■□□□□ 0.9
COL4A4P53420 HBZP1-201ENST00000354915 429 ntBASIC20.64■□□□□ 0.9
COL4A4P53420 BECN2-201ENST00000419583 1296 ntAPPRIS P1 BASIC20.64■□□□□ 0.9
COL4A4P53420 NTF4-201ENST00000593537 932 ntAPPRIS P1 BASIC20.64■□□□□ 0.9
COL4A4P53420 AC022154.1-201ENST00000600303 766 ntTSL 3 BASIC20.64■□□□□ 0.9
COL4A4P53420 CEACAM3-208ENST00000630848 1110 ntAPPRIS ALT2 TSL 5 BASIC20.64■□□□□ 0.9
COL4A4P53420 ISM2-207ENST00000493585 1739 ntTSL 1 (best) BASIC20.64■□□□□ 0.9
COL4A4P53420 OR13J1-201ENST00000377981 1339 ntAPPRIS P1 BASIC20.64■□□□□ 0.89
COL4A4P53420 SLC1A5-203ENST00000542575 2882 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
COL4A4P53420 STK16-201ENST00000396738 1673 ntAPPRIS P1 TSL 2 BASIC20.64■□□□□ 0.89
COL4A4P53420 PRELID3A-203ENST00000587735 1694 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
COL4A4P53420 DTNBP1-203ENST00000355917 1359 ntTSL 5 BASIC20.64■□□□□ 0.89
COL4A4P53420 C7orf43-206ENST00000456769 2046 ntTSL 2 BASIC20.64■□□□□ 0.89
COL4A4P53420 PMPCB-202ENST00000428154 1714 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
COL4A4P53420 PSMD8-201ENST00000215071 1553 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
COL4A4P53420 TMEM42-201ENST00000302392 1026 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
COL4A4P53420 KRTCAP3-202ENST00000407293 942 ntTSL 2 BASIC20.64■□□□□ 0.89
COL4A4P53420 AC068134.1-202ENST00000439072 356 ntTSL 5 BASIC20.64■□□□□ 0.89
COL4A4P53420 LAMTOR4-205ENST00000468582 621 ntTSL 2 BASIC20.64■□□□□ 0.89
COL4A4P53420 FXYD3-214ENST00000605677 633 ntTSL 2 BASIC20.64■□□□□ 0.89
COL4A4P53420 AL031432.5-201ENST00000641059 760 ntBASIC20.64■□□□□ 0.89
Retrieved 100 of 98,524 protein–RNA pairs in 36.3 ms