Protein–RNA interactions for Protein: P39060

COL18A1, Collagen alpha-1(XVIII) chain, humanhuman

Predictions only

Length 1,754 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL18A1P39060 SLCO3A1-202ENST00000424469 2705 ntTSL 1 (best) BASIC25.53■■□□□ 1.68
COL18A1P39060 RTBDN-207ENST00000589272 2076 ntTSL 2 BASIC25.53■■□□□ 1.68
COL18A1P39060 RAP1GDS1-201ENST00000264572 1686 ntTSL 5 BASIC25.53■■□□□ 1.68
COL18A1P39060 SEC1P-202ENST00000473944 940 ntBASIC25.53■■□□□ 1.68
COL18A1P39060 RNPS1-224ENST00000569598 918 ntTSL 5 BASIC25.53■■□□□ 1.68
COL18A1P39060 CDC42EP2-201ENST00000279249 2023 ntAPPRIS P1 TSL 1 (best) BASIC25.53■■□□□ 1.68
COL18A1P39060 GTPBP8-208ENST00000619116 1378 ntTSL 5 BASIC25.52■■□□□ 1.68
COL18A1P39060 AC016734.2-201ENST00000624325 1377 ntBASIC25.52■■□□□ 1.68
COL18A1P39060 JAKMIP1-208ENST00000637373 1362 ntTSL 5 BASIC25.52■■□□□ 1.68
COL18A1P39060 ACBD4-201ENST00000321854 1806 ntAPPRIS P1 TSL 1 (best) BASIC25.52■■□□□ 1.68
COL18A1P39060 HOPX-201ENST00000317745 1129 ntAPPRIS P1 TSL 1 (best) BASIC25.52■■□□□ 1.68
COL18A1P39060 AC111152.3-201ENST00000569699 673 ntBASIC25.52■■□□□ 1.68
COL18A1P39060 KANSL1-AS1-203ENST00000572973 424 ntTSL 3 BASIC25.52■■□□□ 1.68
COL18A1P39060 AC010463.1-201ENST00000596542 1207 ntAPPRIS P1 TSL 2 BASIC25.52■■□□□ 1.68
COL18A1P39060 AP000547.2-201ENST00000609641 661 ntTSL 5 BASIC25.52■■□□□ 1.68
COL18A1P39060 NOL12-207ENST00000611699 903 ntAPPRIS P1 TSL 1 (best) BASIC25.52■■□□□ 1.68
COL18A1P39060 TP53I11-223ENST00000627720 195 ntTSL 5 BASIC25.52■■□□□ 1.68
COL18A1P39060 CACYBP-201ENST00000367679 2766 ntAPPRIS P1 TSL 1 (best) BASIC25.52■■□□□ 1.68
COL18A1P39060 CPLX3-201ENST00000395018 2082 ntAPPRIS P1 TSL 1 (best) BASIC25.52■■□□□ 1.68
COL18A1P39060 NUDT16L1-201ENST00000304301 1349 ntAPPRIS P1 TSL 1 (best) BASIC25.52■■□□□ 1.68
COL18A1P39060 RARA-202ENST00000394081 2285 ntTSL 1 (best) BASIC25.52■■□□□ 1.68
COL18A1P39060 AC006455.5-202ENST00000615248 2284 ntTSL 1 (best) BASIC25.52■■□□□ 1.68
COL18A1P39060 PLIN2-201ENST00000276914 1972 ntAPPRIS P1 TSL 1 (best) BASIC25.52■■□□□ 1.68
COL18A1P39060 BCL11A-209ENST00000489516 1508 ntTSL 5 BASIC25.52■■□□□ 1.68
COL18A1P39060 AC140125.2-201ENST00000502515 1517 ntTSL 1 (best) BASIC25.52■■□□□ 1.68
COL18A1P39060 RTN1-202ENST00000342503 1703 ntAPPRIS ALT1 TSL 1 (best) BASIC25.52■■□□□ 1.68
COL18A1P39060 TNFRSF1A-201ENST00000162749 2223 ntAPPRIS P1 TSL 1 (best) BASIC25.52■■□□□ 1.68
COL18A1P39060 AC008691.1-203ENST00000515337 1580 ntTSL 2 BASIC25.52■■□□□ 1.68
COL18A1P39060 RAX-201ENST00000256852 2935 ntTSL 1 (best) BASIC25.52■■□□□ 1.68
COL18A1P39060 PSCA-201ENST00000301258 1020 ntAPPRIS P2 TSL 1 (best) BASIC25.51■■□□□ 1.67
COL18A1P39060 KRTCAP3-202ENST00000407293 942 ntTSL 2 BASIC25.51■■□□□ 1.67
COL18A1P39060 STK32A-AS1-201ENST00000504297 863 ntTSL 3 BASIC25.51■■□□□ 1.67
COL18A1P39060 HELT-202ENST00000505610 846 ntAPPRIS ALT1 TSL 1 (best) BASIC25.51■■□□□ 1.67
COL18A1P39060 IGFLR1-209ENST00000592537 1195 ntAPPRIS P2 TSL 1 (best) BASIC25.51■■□□□ 1.67
COL18A1P39060 CALM2-209ENST00000628793 1103 ntTSL 5 BASIC25.51■■□□□ 1.67
COL18A1P39060 VGF-202ENST00000445482 2477 ntAPPRIS P1 TSL 5 BASIC25.51■■□□□ 1.67
COL18A1P39060 RUBCN-206ENST00000449205 1603 ntTSL 1 (best) BASIC25.51■■□□□ 1.67
COL18A1P39060 PFKFB3-217ENST00000626882 1965 ntTSL 5 BASIC25.51■■□□□ 1.67
COL18A1P39060 NR1H2-202ENST00000411902 1466 ntTSL 1 (best) BASIC25.51■■□□□ 1.67
COL18A1P39060 B3GALT6-201ENST00000379198 2777 ntAPPRIS P1 BASIC25.51■■□□□ 1.67
COL18A1P39060 TUBA8-201ENST00000316027 1518 ntTSL 2 BASIC25.51■■□□□ 1.67
COL18A1P39060 CDX4-201ENST00000373514 1515 ntAPPRIS P1 TSL 1 (best) BASIC25.51■■□□□ 1.67
COL18A1P39060 MATN4-204ENST00000372756 2077 ntAPPRIS P2 TSL 1 (best) BASIC25.51■■□□□ 1.67
COL18A1P39060 FAM110A-204ENST00000381941 1809 ntAPPRIS P1 TSL 1 (best) BASIC25.51■■□□□ 1.67
COL18A1P39060 ZMYM5-203ENST00000382907 1092 ntTSL 1 (best) BASIC25.51■■□□□ 1.67
COL18A1P39060 ACP6-203ENST00000487562 1258 ntTSL 5 BASIC25.51■■□□□ 1.67
COL18A1P39060 OGFOD2-205ENST00000454694 1488 ntTSL 1 (best) BASIC25.51■■□□□ 1.67
COL18A1P39060 ZGPAT-203ENST00000357119 1896 ntTSL 1 (best) BASIC25.51■■□□□ 1.67
COL18A1P39060 PTPRK-218ENST00000525459 1722 ntTSL 2 BASIC25.51■■□□□ 1.67
COL18A1P39060 SRRM2-AS1-203ENST00000571305 1344 ntTSL 2 BASIC25.51■■□□□ 1.67
COL18A1P39060 PRSS33-204ENST00000576886 1755 ntTSL 1 (best) BASIC25.5■■□□□ 1.67
COL18A1P39060 AL162377.1-201ENST00000618844 1793 ntBASIC25.5■■□□□ 1.67
COL18A1P39060 PRKACA-201ENST00000308677 2677 ntAPPRIS P1 TSL 1 (best) BASIC25.5■■□□□ 1.67
COL18A1P39060 NUDT15-201ENST00000258662 2098 ntAPPRIS P1 TSL 1 (best) BASIC25.5■■□□□ 1.67
COL18A1P39060 KRT13-208ENST00000587544 1456 ntAPPRIS ALT2 TSL 1 (best) BASIC25.5■■□□□ 1.67
COL18A1P39060 MYD88-206ENST00000443433 914 ntTSL 1 (best) BASIC25.5■■□□□ 1.67
COL18A1P39060 AC116353.4-201ENST00000507279 576 ntTSL 4 BASIC25.5■■□□□ 1.67
COL18A1P39060 UNC93B7-201ENST00000509439 705 ntBASIC25.5■■□□□ 1.67
COL18A1P39060 MIR3652-201ENST00000579335 131 ntBASIC25.5■■□□□ 1.67
COL18A1P39060 KLC2-207ENST00000421552 2721 ntTSL 5 BASIC25.5■■□□□ 1.67
COL18A1P39060 SSR1-204ENST00000474597 1808 ntTSL 5 BASIC25.5■■□□□ 1.67
COL18A1P39060 AC126773.2-201ENST00000562172 1682 ntTSL 3 BASIC25.5■■□□□ 1.67
COL18A1P39060 FENDRR-203ENST00000595886 3095 ntTSL 2 BASIC25.49■■□□□ 1.67
COL18A1P39060 CERS4-201ENST00000251363 1797 ntAPPRIS P1 TSL 1 (best) BASIC25.49■■□□□ 1.67
COL18A1P39060 HAAO-201ENST00000294973 1265 ntAPPRIS P1 TSL 1 (best) BASIC25.49■■□□□ 1.67
COL18A1P39060 PSMA7-203ENST00000370873 996 ntAPPRIS P1 TSL 1 (best) BASIC25.49■■□□□ 1.67
COL18A1P39060 AK2-210ENST00000548033 936 ntTSL 1 (best) BASIC25.49■■□□□ 1.67
COL18A1P39060 AC011773.3-202ENST00000549291 790 ntTSL 3 BASIC25.49■■□□□ 1.67
COL18A1P39060 PRELID1P1-202ENST00000567272 903 ntBASIC25.49■■□□□ 1.67
COL18A1P39060 PTGIR-204ENST00000596260 1009 ntTSL 2 BASIC25.49■■□□□ 1.67
COL18A1P39060 UBE2E3-209ENST00000602710 1556 ntAPPRIS P1 TSL 1 (best) BASIC25.49■■□□□ 1.67
COL18A1P39060 AMACR-205ENST00000426255 1316 ntTSL 2 BASIC25.49■■□□□ 1.67
COL18A1P39060 DNASE1L2-203ENST00000564065 2194 ntTSL 1 (best) BASIC25.49■■□□□ 1.67
COL18A1P39060 RNF32-208ENST00000432459 1893 ntAPPRIS P1 TSL 1 (best) BASIC25.49■■□□□ 1.67
COL18A1P39060 C17orf62-204ENST00000437807 2242 ntAPPRIS P1 TSL 2 BASIC25.49■■□□□ 1.67
COL18A1P39060 BCKDK-202ENST00000287507 1907 ntTSL 1 (best) BASIC25.49■■□□□ 1.67
COL18A1P39060 SYTL1-201ENST00000318074 1900 ntTSL 2 BASIC25.49■■□□□ 1.67
COL18A1P39060 CAB39-202ENST00000409788 1626 ntAPPRIS P1 TSL 2 BASIC25.49■■□□□ 1.67
COL18A1P39060 FUOM-201ENST00000278025 709 ntAPPRIS P1 TSL 1 (best) BASIC25.49■■□□□ 1.67
COL18A1P39060 HLA-F-217ENST00000334668 1283 ntAPPRIS ALT2 BASIC25.49■■□□□ 1.67
COL18A1P39060 PPIH-202ENST00000372549 327 ntTSL 3 BASIC25.49■■□□□ 1.67
COL18A1P39060 NAT6-202ENST00000417393 1163 ntAPPRIS ALT2 TSL 1 (best) BASIC25.49■■□□□ 1.67
COL18A1P39060 HLA-F-220ENST00000434407 884 ntBASIC25.49■■□□□ 1.67
COL18A1P39060 ZFPM1-205ENST00000569086 563 ntTSL 2 BASIC25.49■■□□□ 1.67
COL18A1P39060 APTR-204ENST00000440088 2029 ntTSL 1 (best) BASIC25.49■■□□□ 1.67
COL18A1P39060 PHACTR2-203ENST00000367584 2490 ntAPPRIS ALT2 TSL 5 BASIC25.48■■□□□ 1.67
COL18A1P39060 FAM57B-204ENST00000564806 1710 ntTSL 2 BASIC25.48■■□□□ 1.67
COL18A1P39060 PRKAR2A-206ENST00000454963 1849 ntAPPRIS P1 TSL 2 BASIC25.48■■□□□ 1.67
COL18A1P39060 TMEM91-209ENST00000539627 1843 ntTSL 1 (best) BASIC25.48■■□□□ 1.67
COL18A1P39060 STAU2-229ENST00000524300 3065 ntAPPRIS P4 TSL 2 BASIC25.48■■□□□ 1.67
COL18A1P39060 PDS5A-202ENST00000503396 2685 ntTSL 1 (best) BASIC25.48■■□□□ 1.67
COL18A1P39060 CIDEB-201ENST00000258807 2294 ntAPPRIS P1 TSL 1 (best) BASIC25.48■■□□□ 1.67
COL18A1P39060 UBE2Q2-204ENST00000561851 1582 ntTSL 2 BASIC25.48■■□□□ 1.67
COL18A1P39060 SLC22A17-202ENST00000354772 2238 ntAPPRIS ALT2 TSL 1 (best) BASIC25.48■■□□□ 1.67
COL18A1P39060 COPE-201ENST00000262812 1141 ntAPPRIS P1 TSL 1 (best) BASIC25.48■■□□□ 1.67
COL18A1P39060 AC093901.1-201ENST00000414886 778 ntTSL 5 BASIC25.48■■□□□ 1.67
COL18A1P39060 AC105202.1-201ENST00000517833 995 ntTSL 3 BASIC25.48■■□□□ 1.67
COL18A1P39060 AC022150.1-201ENST00000599222 640 ntTSL 3 BASIC25.48■■□□□ 1.67
COL18A1P39060 AC079602.3-201ENST00000623931 403 ntBASIC25.48■■□□□ 1.67
COL18A1P39060 TMEM163-201ENST00000281924 1892 ntAPPRIS P1 TSL 1 (best) BASIC25.47■■□□□ 1.67
Retrieved 100 of 98,524 protein–RNA pairs in 26.4 ms