Protein–RNA interactions for Protein: P25940

COL5A3, Collagen alpha-3(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,745 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A3P25940 AL390860.1-201ENST00000449298 1541 ntTSL 1 (best) BASIC24.38■■□□□ 1.49
COL5A3P25940 DMKN-208ENST00000424570 1293 ntAPPRIS ALT2 TSL 1 (best) BASIC24.38■■□□□ 1.49
COL5A3P25940 LINC01063-201ENST00000441644 348 ntTSL 3 BASIC24.38■■□□□ 1.49
COL5A3P25940 SEC1P-202ENST00000473944 940 ntBASIC24.38■■□□□ 1.49
COL5A3P25940 ACY1-210ENST00000494103 1298 ntTSL 3 BASIC24.38■■□□□ 1.49
COL5A3P25940 ATP5D-207ENST00000591660 637 ntAPPRIS P1 TSL 3 BASIC24.38■■□□□ 1.49
COL5A3P25940 PRKAR2A-206ENST00000454963 1849 ntAPPRIS P1 TSL 2 BASIC24.38■■□□□ 1.49
COL5A3P25940 PCSK6-216ENST00000615296 2921 ntTSL 5 BASIC24.38■■□□□ 1.49
COL5A3P25940 PSMD8-201ENST00000215071 1553 ntAPPRIS P1 TSL 1 (best) BASIC24.38■■□□□ 1.49
COL5A3P25940 PRDX3-201ENST00000298510 1591 ntAPPRIS P1 TSL 1 (best) BASIC24.38■■□□□ 1.49
COL5A3P25940 GTPBP8-208ENST00000619116 1378 ntTSL 5 BASIC24.38■■□□□ 1.49
COL5A3P25940 HOPX-201ENST00000317745 1129 ntAPPRIS P1 TSL 1 (best) BASIC24.38■■□□□ 1.49
COL5A3P25940 RTN1-202ENST00000342503 1703 ntAPPRIS ALT1 TSL 1 (best) BASIC24.38■■□□□ 1.49
COL5A3P25940 AC116353.4-201ENST00000507279 576 ntTSL 4 BASIC24.38■■□□□ 1.49
COL5A3P25940 MFGE8-203ENST00000542878 1172 ntTSL 2 BASIC24.38■■□□□ 1.49
COL5A3P25940 ANKRD34C-AS1-201ENST00000557790 594 ntTSL 3 BASIC24.38■■□□□ 1.49
COL5A3P25940 AL512408.1-201ENST00000569378 2000 ntBASIC24.38■■□□□ 1.49
COL5A3P25940 RTBDN-207ENST00000589272 2076 ntTSL 2 BASIC24.38■■□□□ 1.49
COL5A3P25940 RARA-202ENST00000394081 2285 ntTSL 1 (best) BASIC24.37■■□□□ 1.49
COL5A3P25940 AGAP2-AS1-201ENST00000542466 1500 ntTSL 1 (best) BASIC24.37■■□□□ 1.49
COL5A3P25940 MOB3C-202ENST00000319928 2822 ntAPPRIS P1 TSL 2 BASIC24.37■■□□□ 1.49
COL5A3P25940 PHKG2-202ENST00000424889 1566 ntTSL 2 BASIC24.37■■□□□ 1.49
COL5A3P25940 MATN4-204ENST00000372756 2077 ntAPPRIS P2 TSL 1 (best) BASIC24.37■■□□□ 1.49
COL5A3P25940 NDUFS7-201ENST00000233627 1039 ntAPPRIS P1 TSL 1 (best) BASIC24.37■■□□□ 1.49
COL5A3P25940 PSCA-201ENST00000301258 1020 ntAPPRIS P2 TSL 1 (best) BASIC24.37■■□□□ 1.49
COL5A3P25940 PPIH-202ENST00000372549 327 ntTSL 3 BASIC24.37■■□□□ 1.49
COL5A3P25940 FDX1P1-201ENST00000449115 551 ntBASIC24.37■■□□□ 1.49
COL5A3P25940 HELT-202ENST00000505610 846 ntAPPRIS ALT1 TSL 1 (best) BASIC24.37■■□□□ 1.49
COL5A3P25940 AC034232.1-201ENST00000506026 1064 ntBASIC24.37■■□□□ 1.49
COL5A3P25940 AC020558.2-201ENST00000582325 795 ntTSL 3 BASIC24.37■■□□□ 1.49
COL5A3P25940 AP000547.2-201ENST00000609641 661 ntTSL 5 BASIC24.37■■□□□ 1.49
COL5A3P25940 NAT6-204ENST00000443094 1464 ntAPPRIS ALT2 TSL 1 (best) BASIC24.37■■□□□ 1.49
COL5A3P25940 KRT13-208ENST00000587544 1456 ntAPPRIS ALT2 TSL 1 (best) BASIC24.37■■□□□ 1.49
COL5A3P25940 ZNF668-207ENST00000535577 2396 ntAPPRIS P1 TSL 5 BASIC24.36■■□□□ 1.49
COL5A3P25940 AP2S1-202ENST00000352203 793 ntTSL 2 BASIC24.36■■□□□ 1.49
COL5A3P25940 MIR3652-201ENST00000579335 131 ntBASIC24.36■■□□□ 1.49
COL5A3P25940 IGFLR1-209ENST00000592537 1195 ntAPPRIS P2 TSL 1 (best) BASIC24.36■■□□□ 1.49
COL5A3P25940 AP2S1-204ENST00000597020 707 ntTSL 1 (best) BASIC24.36■■□□□ 1.49
COL5A3P25940 VGF-202ENST00000445482 2477 ntAPPRIS P1 TSL 5 BASIC24.36■■□□□ 1.49
COL5A3P25940 DUT-201ENST00000331200 2147 ntTSL 1 (best) BASIC24.36■■□□□ 1.49
COL5A3P25940 TRAPPC3-209ENST00000616395 1336 ntTSL 3 BASIC24.36■■□□□ 1.49
COL5A3P25940 DNASE1L2-203ENST00000564065 2194 ntTSL 1 (best) BASIC24.36■■□□□ 1.49
COL5A3P25940 PFKFB3-217ENST00000626882 1965 ntTSL 5 BASIC24.36■■□□□ 1.49
COL5A3P25940 CERS4-201ENST00000251363 1797 ntAPPRIS P1 TSL 1 (best) BASIC24.36■■□□□ 1.49
COL5A3P25940 APTR-204ENST00000440088 2029 ntTSL 1 (best) BASIC24.36■■□□□ 1.49
COL5A3P25940 LPAR2-203ENST00000586703 1823 ntAPPRIS P1 TSL 1 (best) BASIC24.36■■□□□ 1.49
COL5A3P25940 AC126773.2-201ENST00000562172 1682 ntTSL 3 BASIC24.36■■□□□ 1.49
COL5A3P25940 SPAG16-207ENST00000432529 1250 ntTSL 1 (best) BASIC24.35■■□□□ 1.49
COL5A3P25940 AP002383.4-201ENST00000442518 975 ntBASIC24.35■■□□□ 1.49
COL5A3P25940 AC003688.1-201ENST00000577138 489 ntAPPRIS P1 TSL 3 BASIC24.35■■□□□ 1.49
COL5A3P25940 AC010463.1-201ENST00000596542 1207 ntAPPRIS P1 TSL 2 BASIC24.35■■□□□ 1.49
COL5A3P25940 AC022150.1-201ENST00000599222 640 ntTSL 3 BASIC24.35■■□□□ 1.49
COL5A3P25940 CADM1-222ENST00000616271 1246 ntTSL 5 BASIC24.35■■□□□ 1.49
COL5A3P25940 PLIN2-201ENST00000276914 1972 ntAPPRIS P1 TSL 1 (best) BASIC24.35■■□□□ 1.49
COL5A3P25940 TUBA8-201ENST00000316027 1518 ntTSL 2 BASIC24.35■■□□□ 1.49
COL5A3P25940 FAM57B-204ENST00000564806 1710 ntTSL 2 BASIC24.35■■□□□ 1.49
COL5A3P25940 UCHL5-202ENST00000367449 1507 ntAPPRIS ALT1 TSL 1 (best) BASIC24.35■■□□□ 1.49
COL5A3P25940 FAM110A-204ENST00000381941 1809 ntAPPRIS P1 TSL 1 (best) BASIC24.35■■□□□ 1.49
COL5A3P25940 GOLGA6L5P-202ENST00000515341 1828 ntBASIC24.35■■□□□ 1.49
COL5A3P25940 STK32A-AS1-201ENST00000504297 863 ntTSL 3 BASIC24.35■■□□□ 1.49
COL5A3P25940 AC105202.1-201ENST00000517833 995 ntTSL 3 BASIC24.35■■□□□ 1.49
COL5A3P25940 AL161669.1-201ENST00000559843 386 ntTSL 3 BASIC24.35■■□□□ 1.49
COL5A3P25940 PTGIR-204ENST00000596260 1009 ntTSL 2 BASIC24.35■■□□□ 1.49
COL5A3P25940 TMEM163-201ENST00000281924 1892 ntAPPRIS P1 TSL 1 (best) BASIC24.35■■□□□ 1.49
COL5A3P25940 BCKDK-202ENST00000287507 1907 ntTSL 1 (best) BASIC24.35■■□□□ 1.49
COL5A3P25940 SYTL1-201ENST00000318074 1900 ntTSL 2 BASIC24.35■■□□□ 1.49
COL5A3P25940 WDSUB1-202ENST00000359774 1912 ntAPPRIS P1 TSL 5 BASIC24.35■■□□□ 1.49
COL5A3P25940 SLC22A17-202ENST00000354772 2238 ntAPPRIS ALT2 TSL 1 (best) BASIC24.35■■□□□ 1.49
COL5A3P25940 AC006455.5-202ENST00000615248 2284 ntTSL 1 (best) BASIC24.34■■□□□ 1.49
COL5A3P25940 NUDT15-201ENST00000258662 2098 ntAPPRIS P1 TSL 1 (best) BASIC24.34■■□□□ 1.49
COL5A3P25940 PRSS33-204ENST00000576886 1755 ntTSL 1 (best) BASIC24.34■■□□□ 1.49
COL5A3P25940 AC140125.2-201ENST00000502515 1517 ntTSL 1 (best) BASIC24.34■■□□□ 1.49
COL5A3P25940 RUBCN-206ENST00000449205 1603 ntTSL 1 (best) BASIC24.34■■□□□ 1.49
COL5A3P25940 FUOM-201ENST00000278025 709 ntAPPRIS P1 TSL 1 (best) BASIC24.34■■□□□ 1.49
COL5A3P25940 CENPX-201ENST00000306704 751 ntTSL 1 (best) BASIC24.34■■□□□ 1.49
COL5A3P25940 ZMYM5-203ENST00000382907 1092 ntTSL 1 (best) BASIC24.34■■□□□ 1.49
COL5A3P25940 C7orf50-203ENST00000397100 1264 ntAPPRIS P2 TSL 3 BASIC24.34■■□□□ 1.49
COL5A3P25940 MYD88-206ENST00000443433 914 ntTSL 1 (best) BASIC24.34■■□□□ 1.49
COL5A3P25940 TPSP2-201ENST00000561760 610 ntBASIC24.34■■□□□ 1.49
COL5A3P25940 ZFPM1-205ENST00000569086 563 ntTSL 2 BASIC24.34■■□□□ 1.49
COL5A3P25940 NUDT16L1-201ENST00000304301 1349 ntAPPRIS P1 TSL 1 (best) BASIC24.34■■□□□ 1.49
COL5A3P25940 OGFOD2-205ENST00000454694 1488 ntTSL 1 (best) BASIC24.34■■□□□ 1.49
COL5A3P25940 UBE2E3-209ENST00000602710 1556 ntAPPRIS P1 TSL 1 (best) BASIC24.33■■□□□ 1.49
COL5A3P25940 MYL5-206ENST00000506838 2956 ntTSL 2 BASIC24.33■■□□□ 1.49
COL5A3P25940 ZNF513-202ENST00000407879 2077 ntTSL 1 (best) BASIC24.33■■□□□ 1.49
COL5A3P25940 PCDHB12-202ENST00000622978 2093 ntTSL 2 BASIC24.33■■□□□ 1.49
COL5A3P25940 CAB39-202ENST00000409788 1626 ntAPPRIS P1 TSL 2 BASIC24.33■■□□□ 1.49
COL5A3P25940 ZNF815P-204ENST00000434898 1737 ntBASIC24.33■■□□□ 1.49
COL5A3P25940 SLCO3A1-202ENST00000424469 2705 ntTSL 1 (best) BASIC24.33■■□□□ 1.49
COL5A3P25940 CACYBP-201ENST00000367679 2766 ntAPPRIS P1 TSL 1 (best) BASIC24.33■■□□□ 1.49
COL5A3P25940 HAAO-201ENST00000294973 1265 ntAPPRIS P1 TSL 1 (best) BASIC24.33■■□□□ 1.49
COL5A3P25940 PTMS-201ENST00000309083 1139 ntAPPRIS P1 TSL 1 (best) BASIC24.33■■□□□ 1.49
COL5A3P25940 PSMA7-203ENST00000370873 996 ntAPPRIS P1 TSL 1 (best) BASIC24.33■■□□□ 1.49
COL5A3P25940 CORT-201ENST00000377049 1130 ntAPPRIS P1 TSL 1 (best) BASIC24.33■■□□□ 1.49
COL5A3P25940 LINC01315-202ENST00000424852 1142 ntTSL 1 (best) BASIC24.33■■□□□ 1.49
COL5A3P25940 AL359747.1-201ENST00000442370 536 ntTSL 2 BASIC24.33■■□□□ 1.49
COL5A3P25940 CLDN7-204ENST00000571881 735 ntTSL 3 BASIC24.33■■□□□ 1.49
COL5A3P25940 AC016734.2-201ENST00000624325 1377 ntBASIC24.33■■□□□ 1.49
COL5A3P25940 PRKACA-201ENST00000308677 2677 ntAPPRIS P1 TSL 1 (best) BASIC24.33■■□□□ 1.49
COL5A3P25940 UBE2Q2-204ENST00000561851 1582 ntTSL 2 BASIC24.33■■□□□ 1.49
Retrieved 100 of 98,524 protein–RNA pairs in 20.9 ms