Protein–RNA interactions for Protein: P20908

COL5A1, Collagen alpha-1(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,838 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A1P20908 TBC1D3P2-202ENST00000577902 1649 ntBASIC18.53■□□□□ 0.56
COL5A1P20908 PRR29-207ENST00000580752 458 ntTSL 3 BASIC18.53■□□□□ 0.56
COL5A1P20908 AC004076.1-201ENST00000596831 664 ntAPPRIS P1 TSL 2 BASIC18.53■□□□□ 0.56
COL5A1P20908 MAP7-206ENST00000611373 2317 ntAPPRIS ALT2 TSL 5 BASIC18.53■□□□□ 0.56
COL5A1P20908 Metazoa_SRP.33-201ENST00000613468 285 ntBASIC18.53■□□□□ 0.56
COL5A1P20908 AC116565.2-201ENST00000637674 1854 ntTSL 2 BASIC18.53■□□□□ 0.56
COL5A1P20908 LRRC75A-201ENST00000409083 2656 ntAPPRIS P3 TSL 2 BASIC18.52■□□□□ 0.56
COL5A1P20908 AP005233.1-201ENST00000562341 2424 ntTSL 2 BASIC18.52■□□□□ 0.56
COL5A1P20908 GABRD-205ENST00000638771 1707 ntAPPRIS ALT2 TSL 3 BASIC18.52■□□□□ 0.56
COL5A1P20908 COQ10A-201ENST00000308197 1652 ntAPPRIS P3 TSL 1 (best) BASIC18.52■□□□□ 0.56
COL5A1P20908 ACAA1-201ENST00000301810 1540 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
COL5A1P20908 PAFAH1B3-201ENST00000262890 1003 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
COL5A1P20908 RPUSD3-201ENST00000383820 1225 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
COL5A1P20908 UBE2J2-205ENST00000400930 1021 ntTSL 5 BASIC18.52■□□□□ 0.56
COL5A1P20908 PRAP1-202ENST00000463201 587 ntAPPRIS ALT2 TSL 1 (best) BASIC18.52■□□□□ 0.56
COL5A1P20908 LINC01785-201ENST00000598042 1112 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
COL5A1P20908 ZNF534-205ENST00000617900 1085 ntTSL 2 BASIC18.52■□□□□ 0.56
COL5A1P20908 BCL10-202ENST00000620248 774 ntTSL 5 BASIC18.52■□□□□ 0.56
COL5A1P20908 IRX4-206ENST00000513692 2391 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
COL5A1P20908 DVL1-204ENST00000610709 2268 ntTSL 2 BASIC18.52■□□□□ 0.56
COL5A1P20908 MAPK15-201ENST00000338033 1961 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
COL5A1P20908 MRPL3-201ENST00000264995 1706 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.55
COL5A1P20908 PML-204ENST00000359928 1726 ntTSL 1 (best) BASIC18.52■□□□□ 0.55
COL5A1P20908 LINC01006-201ENST00000333319 2292 ntBASIC18.52■□□□□ 0.55
COL5A1P20908 RNF113B-201ENST00000267291 1376 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
COL5A1P20908 AC092667.1-201ENST00000434301 2586 ntBASIC18.51■□□□□ 0.55
COL5A1P20908 TCF3P1-201ENST00000423021 1937 ntBASIC18.51■□□□□ 0.55
COL5A1P20908 C20orf196-201ENST00000303142 1154 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
COL5A1P20908 HEBP2-201ENST00000367697 844 ntTSL 2 BASIC18.51■□□□□ 0.55
COL5A1P20908 AC021739.3-201ENST00000557908 855 ntTSL 2 BASIC18.51■□□□□ 0.55
COL5A1P20908 AC004771.4-201ENST00000576752 474 ntTSL 5 BASIC18.51■□□□□ 0.55
COL5A1P20908 FSTL3-201ENST00000166139 2542 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
COL5A1P20908 DBN1-210ENST00000512501 1878 ntTSL 3 BASIC18.51■□□□□ 0.55
COL5A1P20908 PHACTR2-203ENST00000367584 2490 ntAPPRIS ALT2 TSL 5 BASIC18.51■□□□□ 0.55
COL5A1P20908 LPAR2-203ENST00000586703 1823 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
COL5A1P20908 GAL3ST1-206ENST00000406955 1635 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
COL5A1P20908 PHB2-203ENST00000535923 1515 ntAPPRIS P2 TSL 5 BASIC18.51■□□□□ 0.55
COL5A1P20908 MTFR1L-203ENST00000374303 2004 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
COL5A1P20908 AC099778.1-201ENST00000568593 1911 ntBASIC18.51■□□□□ 0.55
COL5A1P20908 SPATA6L-207ENST00000475086 1444 ntAPPRIS P1 TSL 2 BASIC18.51■□□□□ 0.55
COL5A1P20908 RHNO1-204ENST00000489288 1870 ntAPPRIS P3 TSL 1 (best) BASIC18.51■□□□□ 0.55
COL5A1P20908 IRF7-202ENST00000348655 1801 ntAPPRIS ALT2 TSL 1 (best) BASIC18.51■□□□□ 0.55
COL5A1P20908 APBB3-203ENST00000357560 2218 ntAPPRIS P3 TSL 5 BASIC18.51■□□□□ 0.55
COL5A1P20908 MTUS2-202ENST00000380808 1793 ntAPPRIS P3 TSL 1 (best) BASIC18.51■□□□□ 0.55
COL5A1P20908 PLD6-201ENST00000321560 2560 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
COL5A1P20908 CXCL12-204ENST00000395793 665 ntTSL 5 BASIC18.51■□□□□ 0.55
COL5A1P20908 MCFD2-203ENST00000409147 671 ntTSL 2 BASIC18.51■□□□□ 0.55
COL5A1P20908 EHMT1-211ENST00000482340 691 ntTSL 5 BASIC18.51■□□□□ 0.55
COL5A1P20908 AC135586.2-201ENST00000537262 567 ntAPPRIS P1 TSL 4 BASIC18.51■□□□□ 0.55
COL5A1P20908 ABHD17A-204ENST00000590661 1079 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
COL5A1P20908 CR769767.2-201ENST00000622735 460 ntBASIC18.51■□□□□ 0.55
COL5A1P20908 DISC1-212ENST00000535983 2505 ntAPPRIS ALT2 TSL 1 (best) BASIC18.51■□□□□ 0.55
COL5A1P20908 JAKMIP1-203ENST00000409371 2420 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
COL5A1P20908 CIZ1-206ENST00000372954 2731 ntAPPRIS ALT2 TSL 1 (best) BASIC18.5■□□□□ 0.55
COL5A1P20908 VSTM2B-201ENST00000335523 1488 ntAPPRIS P1 TSL 5 BASIC18.5■□□□□ 0.55
COL5A1P20908 TCP11-202ENST00000311875 2166 ntAPPRIS ALT2 TSL 1 (best) BASIC18.5■□□□□ 0.55
COL5A1P20908 SLAIN1-206ENST00000418532 2855 ntAPPRIS ALT2 TSL 5 BASIC18.5■□□□□ 0.55
COL5A1P20908 AGPAT2-205ENST00000538402 1357 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
COL5A1P20908 ASCL5-201ENST00000449188 2026 ntAPPRIS P1 TSL 3 BASIC18.5■□□□□ 0.55
COL5A1P20908 PDCD2-204ENST00000453163 2657 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
COL5A1P20908 KREMEN2-201ENST00000303746 2326 ntAPPRIS P4 TSL 1 (best) BASIC18.5■□□□□ 0.55
COL5A1P20908 SAE1-203ENST00000413379 2313 ntTSL 2 BASIC18.5■□□□□ 0.55
COL5A1P20908 ARFRP1-214ENST00000622789 2559 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
COL5A1P20908 S100A11-201ENST00000271638 594 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
COL5A1P20908 SLC50A1-201ENST00000303343 1137 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
COL5A1P20908 FIS1-207ENST00000474120 915 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
COL5A1P20908 AP003396.3-201ENST00000530918 778 ntTSL 5 BASIC18.5■□□□□ 0.55
COL5A1P20908 AC022509.3-202ENST00000545819 566 ntTSL 3 BASIC18.5■□□□□ 0.55
COL5A1P20908 FGF14-AS2-201ENST00000606448 1074 ntBASIC18.5■□□□□ 0.55
COL5A1P20908 AC064834.1-201ENST00000606986 503 ntTSL 3 BASIC18.5■□□□□ 0.55
COL5A1P20908 REXO2-220ENST00000611665 1158 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
COL5A1P20908 GPR137-204ENST00000438980 1596 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
COL5A1P20908 NF2-201ENST00000334961 2020 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
COL5A1P20908 RTN1-202ENST00000342503 1703 ntAPPRIS ALT1 TSL 1 (best) BASIC18.5■□□□□ 0.55
COL5A1P20908 DUSP5-201ENST00000369583 2557 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
COL5A1P20908 TFAP2A-202ENST00000379608 2576 ntAPPRIS ALT1 TSL 1 (best) BASIC18.5■□□□□ 0.55
COL5A1P20908 ABLIM2-205ENST00000428004 2573 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
COL5A1P20908 AC124066.1-201ENST00000581122 1660 ntTSL 5 BASIC18.5■□□□□ 0.55
COL5A1P20908 CRHR1-203ENST00000339069 2490 ntTSL 2 BASIC18.5■□□□□ 0.55
COL5A1P20908 STXBP2-203ENST00000441779 1914 ntTSL 2 BASIC18.5■□□□□ 0.55
COL5A1P20908 TMEM161A-202ENST00000450333 1930 ntTSL 2 BASIC18.5■□□□□ 0.55
COL5A1P20908 WIPF1-203ENST00000392546 2180 ntAPPRIS P2 TSL 5 BASIC18.49■□□□□ 0.55
COL5A1P20908 CPNE7-202ENST00000319518 2409 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
COL5A1P20908 AC008060.1-201ENST00000401499 1551 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
COL5A1P20908 PYCR3-207ENST00000495276 2332 ntAPPRIS ALT2 TSL 1 (best) BASIC18.49■□□□□ 0.55
COL5A1P20908 TMEM88-201ENST00000301599 875 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
COL5A1P20908 AC005056.1-201ENST00000435932 532 ntTSL 4 BASIC18.49■□□□□ 0.55
COL5A1P20908 AC079385.1-201ENST00000551505 570 ntTSL 4 BASIC18.49■□□□□ 0.55
COL5A1P20908 TYROBP-209ENST00000589517 415 ntAPPRIS ALT1 TSL 1 (best) BASIC18.49■□□□□ 0.55
COL5A1P20908 CHMP2A-208ENST00000601220 885 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
COL5A1P20908 CYP2D7-203ENST00000433992 1740 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
COL5A1P20908 CYP2D7-207ENST00000612115 1734 ntAPPRIS P1 TSL 5 BASIC18.49■□□□□ 0.55
COL5A1P20908 MAG-202ENST00000392213 2390 ntAPPRIS P4 TSL 1 (best) BASIC18.49■□□□□ 0.55
COL5A1P20908 NTRK3-206ENST00000540489 2145 ntTSL 5 BASIC18.49■□□□□ 0.55
COL5A1P20908 SLC38A11-203ENST00000409149 1621 ntAPPRIS P2 TSL 2 BASIC18.49■□□□□ 0.55
COL5A1P20908 ZNF497-202ENST00000425453 2261 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
COL5A1P20908 DYRK3-202ENST00000367108 2218 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
COL5A1P20908 PDE9A-213ENST00000398236 1776 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
COL5A1P20908 PRSS33-204ENST00000576886 1755 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
COL5A1P20908 SLC35A3-208ENST00000638336 2438 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
Retrieved 100 of 98,524 protein–RNA pairs in 42.8 ms