Protein–RNA interactions for Protein: P02461

COL3A1, Collagen alpha-1(III) chain, humanhuman

Predicted RBP Predictions only

Length 1,466 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL3A1P02461 FBXL16-203ENST00000562563 2257 ntTSL 2 BASIC25.54■■□□□ 1.68
COL3A1P02461 ARHGAP11A-205ENST00000563864 2279 ntTSL 5 BASIC25.54■■□□□ 1.68
COL3A1P02461 PTMS-201ENST00000309083 1139 ntAPPRIS P1 TSL 1 (best) BASIC25.53■■□□□ 1.68
COL3A1P02461 KRT17P2-202ENST00000326333 1174 ntTSL 2 BASIC25.53■■□□□ 1.68
COL3A1P02461 AC005521.1-201ENST00000393351 872 ntBASIC25.53■■□□□ 1.68
COL3A1P02461 RNF144A-AS1-204ENST00000437589 618 ntTSL 2 BASIC25.53■■□□□ 1.68
COL3A1P02461 SLC52A2-205ENST00000526752 710 ntTSL 3 BASIC25.53■■□□□ 1.68
COL3A1P02461 AC090970.2-201ENST00000561318 865 ntTSL 5 BASIC25.53■■□□□ 1.68
COL3A1P02461 AC215522.2-202ENST00000633163 1143 ntTSL 5 BASIC25.53■■□□□ 1.68
COL3A1P02461 PCID2-202ENST00000337344 1898 ntAPPRIS P1 TSL 2 BASIC25.53■■□□□ 1.68
COL3A1P02461 GFI1-203ENST00000427103 2693 ntAPPRIS P1 TSL 1 (best) BASIC25.53■■□□□ 1.68
COL3A1P02461 FFAR3-201ENST00000327809 1796 ntAPPRIS P1 TSL 1 (best) BASIC25.53■■□□□ 1.68
COL3A1P02461 CFAP100-203ENST00000505024 1994 ntAPPRIS ALT2 TSL 1 (best) BASIC25.53■■□□□ 1.68
COL3A1P02461 AC233280.1-201ENST00000423600 1684 ntTSL 2 BASIC25.53■■□□□ 1.68
COL3A1P02461 AVL9-209ENST00000640103 1367 ntTSL 5 BASIC25.53■■□□□ 1.68
COL3A1P02461 GSTM4-201ENST00000326729 1321 ntTSL 1 (best) BASIC25.53■■□□□ 1.68
COL3A1P02461 KRT18P22-201ENST00000402024 1347 ntBASIC25.53■■□□□ 1.68
COL3A1P02461 PRDX5-201ENST00000265462 893 ntAPPRIS P1 TSL 1 (best) BASIC25.53■■□□□ 1.68
COL3A1P02461 AC134772.1-201ENST00000438872 885 ntTSL 3 BASIC25.53■■□□□ 1.68
COL3A1P02461 ABHD11-207ENST00000458339 890 ntTSL 3 BASIC25.53■■□□□ 1.68
COL3A1P02461 PSMB5-205ENST00000493471 1117 ntTSL 1 (best) BASIC25.53■■□□□ 1.68
COL3A1P02461 AC098864.1-204ENST00000513752 805 ntTSL 4 BASIC25.53■■□□□ 1.68
COL3A1P02461 AL929554.1-201ENST00000568665 460 ntAPPRIS P1 TSL 3 BASIC25.53■■□□□ 1.68
COL3A1P02461 TOR1B-201ENST00000259339 2769 ntAPPRIS P1 TSL 1 (best) BASIC25.52■■□□□ 1.68
COL3A1P02461 SNRPN-207ENST00000554227 1763 ntTSL 5 BASIC25.52■■□□□ 1.68
COL3A1P02461 FKBP8-206ENST00000596558 1756 ntAPPRIS ALT1 TSL 2 BASIC25.52■■□□□ 1.68
COL3A1P02461 ARFIP2-204ENST00000445086 1300 ntTSL 2 BASIC25.52■■□□□ 1.68
COL3A1P02461 NECAB3-202ENST00000375238 1942 ntAPPRIS P1 TSL 1 (best) BASIC25.52■■□□□ 1.68
COL3A1P02461 SLC34A3-201ENST00000361134 2124 ntAPPRIS P1 TSL 2 BASIC25.52■■□□□ 1.68
COL3A1P02461 MARC2-202ENST00000366913 2134 ntAPPRIS P1 TSL 1 (best) BASIC25.52■■□□□ 1.68
COL3A1P02461 BEX3-204ENST00000372645 913 ntAPPRIS P1 TSL 1 (best) BASIC25.52■■□□□ 1.68
COL3A1P02461 MLLT10-205ENST00000377100 1136 ntTSL 2 BASIC25.52■■□□□ 1.68
COL3A1P02461 TK2-213ENST00000563369 882 ntTSL 5 BASIC25.52■■□□□ 1.68
COL3A1P02461 SMN1-211ENST00000625245 885 ntAPPRIS ALT2 TSL 5 BASIC25.52■■□□□ 1.68
COL3A1P02461 SMN2-215ENST00000628696 885 ntAPPRIS ALT2 TSL 5 BASIC25.52■■□□□ 1.68
COL3A1P02461 PMS1-222ENST00000639501 2506 ntTSL 5 BASIC25.52■■□□□ 1.68
COL3A1P02461 AKIRIN2-201ENST00000257787 1662 ntAPPRIS P1 TSL 1 (best) BASIC25.52■■□□□ 1.68
COL3A1P02461 CTBP2-205ENST00000411419 2036 ntAPPRIS P1 TSL 1 (best) BASIC25.51■■□□□ 1.68
COL3A1P02461 TSNAXIP1-202ENST00000415766 2338 ntAPPRIS ALT2 TSL 2 BASIC25.51■■□□□ 1.67
COL3A1P02461 SLC25A3-201ENST00000188376 1909 ntAPPRIS ALT1 TSL 1 (best) BASIC25.51■■□□□ 1.67
COL3A1P02461 MBD1-216ENST00000587605 1945 ntTSL 2 BASIC25.51■■□□□ 1.67
COL3A1P02461 RRS1-201ENST00000320270 1706 ntAPPRIS P1 BASIC25.51■■□□□ 1.67
COL3A1P02461 TRMT6-202ENST00000453074 2239 ntTSL 2 BASIC25.51■■□□□ 1.67
COL3A1P02461 PIN1-201ENST00000247970 997 ntAPPRIS P1 TSL 1 (best) BASIC25.51■■□□□ 1.67
COL3A1P02461 UQCRQ-201ENST00000378665 586 ntAPPRIS P1 TSL 1 (best) BASIC25.51■■□□□ 1.67
COL3A1P02461 KRT18P21-201ENST00000515767 1272 ntBASIC25.51■■□□□ 1.67
COL3A1P02461 KCTD10-211ENST00000540411 866 ntTSL 1 (best) BASIC25.51■■□□□ 1.67
COL3A1P02461 L34079.3-201ENST00000600242 546 ntTSL 4 BASIC25.51■■□□□ 1.67
COL3A1P02461 CYP2A7-202ENST00000301146 2281 ntAPPRIS P1 TSL 1 (best) BASIC25.5■■□□□ 1.67
COL3A1P02461 SELENOF-207ENST00000611507 1785 ntTSL 5 BASIC25.5■■□□□ 1.67
COL3A1P02461 FAM43B-201ENST00000332947 2572 ntAPPRIS P1 BASIC25.5■■□□□ 1.67
COL3A1P02461 GFI1-202ENST00000370332 2855 ntAPPRIS P1 TSL 1 (best) BASIC25.5■■□□□ 1.67
COL3A1P02461 AC103564.1-201ENST00000437330 562 ntTSL 5 BASIC25.5■■□□□ 1.67
COL3A1P02461 OOEP-AS1-201ENST00000445350 463 ntTSL 3 BASIC25.5■■□□□ 1.67
COL3A1P02461 AP003041.3-201ENST00000527151 707 ntBASIC25.5■■□□□ 1.67
COL3A1P02461 AC006011.2-201ENST00000621313 1158 ntBASIC25.5■■□□□ 1.67
COL3A1P02461 UBE2Q2-204ENST00000561851 1582 ntTSL 2 BASIC25.5■■□□□ 1.67
COL3A1P02461 GSN-204ENST00000373818 2657 ntTSL 1 (best) BASIC25.5■■□□□ 1.67
COL3A1P02461 HNRNPA3-204ENST00000435711 1731 ntAPPRIS P3 TSL 1 (best) BASIC25.5■■□□□ 1.67
COL3A1P02461 QPCTL-202ENST00000366382 1814 ntTSL 2 BASIC25.5■■□□□ 1.67
COL3A1P02461 ESR2-212ENST00000556275 2695 ntTSL 2 BASIC25.5■■□□□ 1.67
COL3A1P02461 SMIM4-203ENST00000477703 1770 ntAPPRIS P1 TSL 1 (best) BASIC25.49■■□□□ 1.67
COL3A1P02461 ISOC2-203ENST00000438389 1566 ntTSL 2 BASIC25.49■■□□□ 1.67
COL3A1P02461 AC087482.1-204ENST00000636067 2431 ntTSL 5 BASIC25.49■■□□□ 1.67
COL3A1P02461 MRGPRF-201ENST00000309099 2295 ntAPPRIS P1 TSL 1 (best) BASIC25.49■■□□□ 1.67
COL3A1P02461 ITGB7-209ENST00000550743 2138 ntTSL 5 BASIC25.49■■□□□ 1.67
COL3A1P02461 MAP3K14-AS1-202ENST00000585351 893 ntTSL 1 (best) BASIC25.49■■□□□ 1.67
COL3A1P02461 TYROBP-209ENST00000589517 415 ntAPPRIS ALT1 TSL 1 (best) BASIC25.49■■□□□ 1.67
COL3A1P02461 AC010653.2-201ENST00000623505 997 ntBASIC25.49■■□□□ 1.67
COL3A1P02461 AC092865.7-201ENST00000641832 219 ntBASIC25.49■■□□□ 1.67
COL3A1P02461 MUTYH-203ENST00000372098 1839 ntTSL 1 (best) BASIC25.49■■□□□ 1.67
COL3A1P02461 MUTYH-204ENST00000372104 1823 ntAPPRIS ALT2 TSL 1 (best) BASIC25.49■■□□□ 1.67
COL3A1P02461 MUTYH-205ENST00000372110 1809 ntTSL 1 (best) BASIC25.49■■□□□ 1.67
COL3A1P02461 AP001922.1-201ENST00000499390 1504 ntTSL 1 (best) BASIC25.49■■□□□ 1.67
COL3A1P02461 MARK3-206ENST00000440884 2643 ntTSL 1 (best) BASIC25.49■■□□□ 1.67
COL3A1P02461 STXBP2-203ENST00000441779 1914 ntTSL 2 BASIC25.49■■□□□ 1.67
COL3A1P02461 SERPINH1-212ENST00000530284 1358 ntTSL 1 (best) BASIC25.49■■□□□ 1.67
COL3A1P02461 PDZD7-201ENST00000370215 2032 ntTSL 2 BASIC25.49■■□□□ 1.67
COL3A1P02461 TH-203ENST00000352909 1889 ntAPPRIS P1 TSL 1 (best) BASIC25.49■■□□□ 1.67
COL3A1P02461 MRPL3-201ENST00000264995 1706 ntAPPRIS P1 TSL 1 (best) BASIC25.49■■□□□ 1.67
COL3A1P02461 BTNL9-210ENST00000515271 1444 ntTSL 2 BASIC25.48■■□□□ 1.67
COL3A1P02461 C21orf58-205ENST00000397683 1674 ntAPPRIS ALT2 TSL 2 BASIC25.48■■□□□ 1.67
COL3A1P02461 LAYN-203ENST00000436913 2590 ntTSL 2 BASIC25.48■■□□□ 1.67
COL3A1P02461 BAD-201ENST00000309032 929 ntAPPRIS P1 TSL 1 (best) BASIC25.48■■□□□ 1.67
COL3A1P02461 HES7-201ENST00000317814 678 ntAPPRIS P3 TSL 1 (best) BASIC25.48■■□□□ 1.67
COL3A1P02461 MCF2L-207ENST00000397024 490 ntTSL 5 BASIC25.48■■□□□ 1.67
COL3A1P02461 CTBP2-202ENST00000334808 2130 ntTSL 1 (best) BASIC25.48■■□□□ 1.67
COL3A1P02461 CASTOR1-202ENST00000407689 1623 ntAPPRIS P1 TSL 1 (best) BASIC25.48■■□□□ 1.67
COL3A1P02461 ELMOD1-206ENST00000531234 1832 ntTSL 2 BASIC25.48■■□□□ 1.67
COL3A1P02461 CCDC91-207ENST00000539107 2440 ntTSL 5 BASIC25.48■■□□□ 1.67
COL3A1P02461 TINAGL1-201ENST00000271064 2187 ntAPPRIS P3 TSL 1 (best) BASIC25.48■■□□□ 1.67
COL3A1P02461 AMDHD1-201ENST00000266736 2260 ntAPPRIS P1 TSL 1 (best) BASIC25.48■■□□□ 1.67
COL3A1P02461 RELB-207ENST00000625761 2279 ntAPPRIS ALT2 TSL 5 BASIC25.48■■□□□ 1.67
COL3A1P02461 FNDC11-204ENST00000615526 2954 ntAPPRIS P1 BASIC25.48■■□□□ 1.67
COL3A1P02461 PAN3-201ENST00000380958 2833 ntAPPRIS P2 TSL 5 BASIC25.48■■□□□ 1.67
COL3A1P02461 ZNF584-202ENST00000322834 1042 ntTSL 2 BASIC25.47■■□□□ 1.67
COL3A1P02461 LRRC23-202ENST00000323702 1208 ntAPPRIS ALT2 TSL 1 (best) BASIC25.47■■□□□ 1.67
COL3A1P02461 H2AFB2-201ENST00000354514 348 ntAPPRIS P1 BASIC25.47■■□□□ 1.67
COL3A1P02461 AL353719.1-201ENST00000566847 864 ntBASIC25.47■■□□□ 1.67
COL3A1P02461 ST20-MTHFS-203ENST00000615374 679 ntAPPRIS P1 TSL 3 BASIC25.47■■□□□ 1.67
Retrieved 100 of 98,524 protein–RNA pairs in 39 ms