Protein–RNA interactions for Protein: Q9UK41

VPS28, Vacuolar protein sorting-associated protein 28 homolog, humanhuman

Predictions only

Length 221 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28Q9UK41 AC108043.1-201ENST00000512696 574 ntBASIC4.35□□□□□ -1.71
VPS28Q9UK41 RNU6-1261P-201ENST00000517194 104 ntBASIC4.35□□□□□ -1.71
VPS28Q9UK41 AC027701.1-201ENST00000520155 823 ntTSL 3 BASIC4.35□□□□□ -1.71
VPS28Q9UK41 MTND1P6-201ENST00000523621 946 ntBASIC4.35□□□□□ -1.71
VPS28Q9UK41 NRG1-IT1-203ENST00000523743 292 ntTSL 3 BASIC4.35□□□□□ -1.71
VPS28Q9UK41 OR7E13P-201ENST00000526052 910 ntBASIC4.35□□□□□ -1.71
VPS28Q9UK41 AC090092.1-201ENST00000530576 510 ntTSL 2 BASIC4.35□□□□□ -1.71
VPS28Q9UK41 AP003969.1-201ENST00000531846 400 ntTSL 2 BASIC4.35□□□□□ -1.71
VPS28Q9UK41 AP000462.1-201ENST00000535704 818 ntTSL 3 BASIC4.35□□□□□ -1.71
VPS28Q9UK41 LINC02423-202ENST00000542577 460 ntTSL 3 BASIC4.35□□□□□ -1.71
VPS28Q9UK41 AC008127.2-201ENST00000549925 1075 ntBASIC4.35□□□□□ -1.71
VPS28Q9UK41 AL389895.1-201ENST00000554127 252 ntBASIC4.35□□□□□ -1.71
VPS28Q9UK41 AC091117.2-201ENST00000560324 542 ntTSL 4 BASIC4.35□□□□□ -1.71
VPS28Q9UK41 ZNF283-207ENST00000593164 1260 ntTSL 1 (best) BASIC4.35□□□□□ -1.71
VPS28Q9UK41 RNU4-5P-201ENST00000607255 135 ntBASIC4.35□□□□□ -1.71
VPS28Q9UK41 AL159169.3-201ENST00000608871 561 ntBASIC4.35□□□□□ -1.71
VPS28Q9UK41 AC090912.3-201ENST00000609775 533 ntBASIC4.35□□□□□ -1.71
VPS28Q9UK41 AC008083.4-201ENST00000615076 444 ntBASIC4.35□□□□□ -1.71
VPS28Q9UK41 AC231759.1-201ENST00000616455 597 ntBASIC4.35□□□□□ -1.71
VPS28Q9UK41 MIR8059-201ENST00000620427 81 ntBASIC4.35□□□□□ -1.71
VPS28Q9UK41 AC009318.4-201ENST00000620496 486 ntBASIC4.35□□□□□ -1.71
VPS28Q9UK41 ALG13-230ENST00000623189 458 ntTSL 3 BASIC4.35□□□□□ -1.71
VPS28Q9UK41 AC067931.1-201ENST00000624190 671 ntBASIC4.35□□□□□ -1.71
VPS28Q9UK41 AC008013.2-202ENST00000637965 364 ntBASIC4.35□□□□□ -1.71
VPS28Q9UK41 CDH8-205ENST00000577730 8009 ntTSL 5 BASIC4.35□□□□□ -1.71
VPS28Q9UK41 AJ009632.2-204ENST00000635621 1401 ntTSL 5 BASIC4.35□□□□□ -1.71
VPS28Q9UK41 MPDZ-215ENST00000541718 7603 ntAPPRIS P3 TSL 1 (best) BASIC4.35□□□□□ -1.71
VPS28Q9UK41 F8-202ENST00000360256 9059 ntAPPRIS P1 TSL 1 (best) BASIC4.35□□□□□ -1.71
VPS28Q9UK41 CDKL3-209ENST00000523054 1775 ntTSL 2 BASIC4.35□□□□□ -1.71
VPS28Q9UK41 DLG1-217ENST00000452595 3053 ntTSL 2 BASIC4.35□□□□□ -1.71
VPS28Q9UK41 PLEKHG7-203ENST00000638590 3267 ntAPPRIS P1 TSL 2 BASIC4.34□□□□□ -1.71
VPS28Q9UK41 MGA-202ENST00000545763 11413 ntAPPRIS ALT2 TSL 5 BASIC4.34□□□□□ -1.71
VPS28Q9UK41 OR10D3-203ENST00000641546 3566 ntAPPRIS P1 BASIC4.34□□□□□ -1.71
VPS28Q9UK41 SMC6-203ENST00000402989 3729 ntAPPRIS P1 TSL 2 BASIC4.34□□□□□ -1.71
VPS28Q9UK41 ZMYND11-217ENST00000627286 3914 ntTSL 5 BASIC4.34□□□□□ -1.71
VPS28Q9UK41 DIRC1-201ENST00000308100 1037 ntAPPRIS P1 TSL 1 (best) BASIC4.34□□□□□ -1.71
VPS28Q9UK41 NACA3P-201ENST00000359690 648 ntBASIC4.34□□□□□ -1.71
VPS28Q9UK41 Y_RNA.25-201ENST00000362528 102 ntBASIC4.34□□□□□ -1.71
VPS28Q9UK41 RNU5D-1-201ENST00000363299 116 ntBASIC4.34□□□□□ -1.71
VPS28Q9UK41 RNU6-657P-201ENST00000383904 107 ntBASIC4.34□□□□□ -1.71
VPS28Q9UK41 RNU6-413P-201ENST00000384115 107 ntBASIC4.34□□□□□ -1.71
VPS28Q9UK41 SNORA51.6-201ENST00000384151 125 ntBASIC4.34□□□□□ -1.71
VPS28Q9UK41 Y_RNA.493-201ENST00000384422 102 ntBASIC4.34□□□□□ -1.71
VPS28Q9UK41 AL024474.1-201ENST00000404655 591 ntBASIC4.34□□□□□ -1.71
VPS28Q9UK41 RNU6-584P-201ENST00000410350 95 ntBASIC4.34□□□□□ -1.71
VPS28Q9UK41 AL161631.1-201ENST00000417933 486 ntBASIC4.34□□□□□ -1.71
VPS28Q9UK41 MYCBP2-AS1-201ENST00000422231 519 ntTSL 3 BASIC4.34□□□□□ -1.71
VPS28Q9UK41 AC105399.1-201ENST00000422418 418 ntTSL 2 BASIC4.34□□□□□ -1.71
VPS28Q9UK41 AL078590.2-202ENST00000422736 568 ntTSL 3 BASIC4.34□□□□□ -1.71
VPS28Q9UK41 TEX41-204ENST00000423031 491 ntTSL 4 BASIC4.34□□□□□ -1.71
VPS28Q9UK41 RBMY1KP-201ENST00000423480 476 ntBASIC4.34□□□□□ -1.71
VPS28Q9UK41 NANOGP5-201ENST00000424456 877 ntBASIC4.34□□□□□ -1.71
VPS28Q9UK41 RPL7P44-201ENST00000424827 742 ntBASIC4.34□□□□□ -1.71
VPS28Q9UK41 LINC01850-201ENST00000429916 357 ntTSL 3 BASIC4.34□□□□□ -1.71
VPS28Q9UK41 PRELID3BP10-201ENST00000431957 584 ntBASIC4.34□□□□□ -1.71
VPS28Q9UK41 ELOCP18-201ENST00000434209 337 ntBASIC4.34□□□□□ -1.71
VPS28Q9UK41 USP9YP24-201ENST00000434374 697 ntBASIC4.34□□□□□ -1.71
VPS28Q9UK41 NANOGP2-201ENST00000435391 727 ntBASIC4.34□□□□□ -1.71
VPS28Q9UK41 RPL23AP46-201ENST00000438548 490 ntBASIC4.34□□□□□ -1.71
VPS28Q9UK41 AL360013.2-201ENST00000440104 807 ntTSL 2 BASIC4.34□□□□□ -1.71
VPS28Q9UK41 USP9YP17-201ENST00000444617 696 ntBASIC4.34□□□□□ -1.71
VPS28Q9UK41 AL157359.1-201ENST00000449840 424 ntTSL 3 BASIC4.34□□□□□ -1.71
VPS28Q9UK41 ZNF886P-201ENST00000450781 723 ntBASIC4.34□□□□□ -1.71
VPS28Q9UK41 PLCE1-AS2-205ENST00000453183 427 ntTSL 5 BASIC4.34□□□□□ -1.71
VPS28Q9UK41 RFC5P1-201ENST00000454419 874 ntBASIC4.34□□□□□ -1.71
VPS28Q9UK41 RPS29P19-201ENST00000479709 171 ntBASIC4.34□□□□□ -1.71
VPS28Q9UK41 AC078817.1-201ENST00000492623 435 ntBASIC4.34□□□□□ -1.71
VPS28Q9UK41 GTF2IP9-201ENST00000502460 301 ntBASIC4.34□□□□□ -1.71
VPS28Q9UK41 AC139783.2-201ENST00000504847 1145 ntBASIC4.34□□□□□ -1.71
VPS28Q9UK41 AC097480.1-201ENST00000509416 712 ntTSL 3 BASIC4.34□□□□□ -1.71
VPS28Q9UK41 RNU6-1225P-201ENST00000516336 65 ntBASIC4.34□□□□□ -1.71
VPS28Q9UK41 AC022390.1-201ENST00000517854 434 ntTSL 3 BASIC4.34□□□□□ -1.71
VPS28Q9UK41 AC013509.1-201ENST00000524269 339 ntTSL 3 BASIC4.34□□□□□ -1.71
VPS28Q9UK41 SNHG1-219ENST00000542112 780 ntTSL 3 BASIC4.34□□□□□ -1.71
VPS28Q9UK41 AC089983.1-201ENST00000549807 701 ntTSL 3 BASIC4.34□□□□□ -1.71
VPS28Q9UK41 LINC02290-201ENST00000554187 608 ntTSL 4 BASIC4.34□□□□□ -1.71
VPS28Q9UK41 AC068397.1-201ENST00000560337 531 ntTSL 2 BASIC4.34□□□□□ -1.71
VPS28Q9UK41 MTND1P8-201ENST00000571424 950 ntBASIC4.34□□□□□ -1.71
VPS28Q9UK41 MSMB-201ENST00000581478 386 ntTSL 1 (best) BASIC4.34□□□□□ -1.71
VPS28Q9UK41 LINC01899-203ENST00000584810 337 ntTSL 2 BASIC4.34□□□□□ -1.71
VPS28Q9UK41 AC008764.2-201ENST00000597226 376 ntTSL 5 BASIC4.34□□□□□ -1.71
VPS28Q9UK41 AL355812.1-201ENST00000603215 216 ntBASIC4.34□□□□□ -1.71
VPS28Q9UK41 C2orf27A-204ENST00000623058 969 ntBASIC4.34□□□□□ -1.71
VPS28Q9UK41 AC019278.1-201ENST00000623516 479 ntBASIC4.34□□□□□ -1.71
VPS28Q9UK41 FAM26D-205ENST00000628083 1117 ntTSL 2 BASIC4.34□□□□□ -1.71
VPS28Q9UK41 SCAI-201ENST00000336505 12079 ntAPPRIS P1 TSL 1 (best) BASIC4.34□□□□□ -1.71
VPS28Q9UK41 EIF3E-201ENST00000220849 1543 ntAPPRIS P1 TSL 1 (best) BASIC4.34□□□□□ -1.71
VPS28Q9UK41 SMCO3-201ENST00000316048 2104 ntAPPRIS P1 TSL 1 (best) BASIC4.34□□□□□ -1.71
VPS28Q9UK41 AL499616.1-201ENST00000415437 2633 ntTSL 2 BASIC4.34□□□□□ -1.72
VPS28Q9UK41 SMG1P1-206ENST00000431681 2913 ntTSL 2 BASIC4.34□□□□□ -1.72
VPS28Q9UK41 ANO3-204ENST00000531568 3117 ntAPPRIS ALT2 TSL 2 BASIC4.34□□□□□ -1.72
VPS28Q9UK41 WDR72-204ENST00000559418 3602 ntTSL 5 BASIC4.34□□□□□ -1.72
VPS28Q9UK41 NCOA1-202ENST00000348332 6895 ntAPPRIS P4 TSL 1 (best) BASIC4.34□□□□□ -1.72
VPS28Q9UK41 RRAS2-202ENST00000414023 1884 ntTSL 2 BASIC4.33□□□□□ -1.72
VPS28Q9UK41 GPR34-201ENST00000378138 1815 ntAPPRIS P1 TSL 1 (best) BASIC4.33□□□□□ -1.72
VPS28Q9UK41 FBXO8-205ENST00000615392 1591 ntTSL 1 (best) BASIC4.33□□□□□ -1.72
VPS28Q9UK41 HGF-202ENST00000354224 1425 ntTSL 1 (best) BASIC4.33□□□□□ -1.72
VPS28Q9UK41 EMCN-209ENST00000511970 1377 ntAPPRIS ALT2 TSL 2 BASIC4.33□□□□□ -1.72
VPS28Q9UK41 TJP1-204ENST00000400011 6764 ntAPPRIS ALT2 TSL 1 (best) BASIC4.33□□□□□ -1.72
VPS28Q9UK41 AC107982.1-201ENST00000507171 1300 ntBASIC4.33□□□□□ -1.72
Retrieved 100 of 98,524 protein–RNA pairs in 76.5 ms