Protein–RNA interactions for Protein: Q9UBP4

DKK3, Dickkopf-related protein 3, humanhuman

Predictions only

Length 350 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DKK3Q9UBP4 AC078899.5-201ENST00000612475 178 ntBASIC4.81□□□□□ -1.64
DKK3Q9UBP4 AC010678.1-201ENST00000614118 713 ntBASIC4.81□□□□□ -1.64
DKK3Q9UBP4 MIR6853-201ENST00000619642 74 ntBASIC4.81□□□□□ -1.64
DKK3Q9UBP4 ATE1-AS1-202ENST00000636460 506 ntBASIC4.81□□□□□ -1.64
DKK3Q9UBP4 GABRA1-220ENST00000638159 4088 ntTSL 5 BASIC4.81□□□□□ -1.64
DKK3Q9UBP4 TENM1-201ENST00000371130 12875 ntAPPRIS P3 TSL 1 (best) BASIC4.81□□□□□ -1.64
DKK3Q9UBP4 RPAP2-203ENST00000610020 16993 ntAPPRIS P1 TSL 1 (best) BASIC4.81□□□□□ -1.64
DKK3Q9UBP4 RAD51AP1-201ENST00000228843 2163 ntAPPRIS ALT2 TSL 1 (best) BASIC4.81□□□□□ -1.64
DKK3Q9UBP4 PTPN13-201ENST00000316707 7546 ntAPPRIS ALT2 TSL 1 (best) BASIC4.81□□□□□ -1.64
DKK3Q9UBP4 TUBD1-214ENST00000592426 1460 ntAPPRIS P1 TSL 1 (best) BASIC4.81□□□□□ -1.64
DKK3Q9UBP4 OBSCN-204ENST00000366707 26772 ntAPPRIS P1 TSL 5 BASIC4.81□□□□□ -1.64
DKK3Q9UBP4 PLCB4-203ENST00000378493 5796 ntAPPRIS ALT1 TSL 2 BASIC4.8□□□□□ -1.64
DKK3Q9UBP4 SYT14-206ENST00000537238 5208 ntAPPRIS ALT2 TSL 5 BASIC4.8□□□□□ -1.64
DKK3Q9UBP4 ADAMTS9-AS1-203ENST00000471990 1606 ntTSL 2 BASIC4.8□□□□□ -1.64
DKK3Q9UBP4 OR11H5P-202ENST00000641612 1325 ntBASIC4.8□□□□□ -1.64
DKK3Q9UBP4 AL442639.1-201ENST00000625030 1899 ntBASIC4.8□□□□□ -1.64
DKK3Q9UBP4 WDR35-202ENST00000345530 6960 ntAPPRIS ALT1 TSL 1 (best) BASIC4.8□□□□□ -1.64
DKK3Q9UBP4 AC079741.1-201ENST00000321498 212 ntBASIC4.8□□□□□ -1.64
DKK3Q9UBP4 DPPA3-201ENST00000345088 1079 ntAPPRIS P1 TSL 1 (best) BASIC4.8□□□□□ -1.64
DKK3Q9UBP4 IVNS1ABP-201ENST00000367497 746 ntTSL 5 BASIC4.8□□□□□ -1.64
DKK3Q9UBP4 BANF2-202ENST00000377805 444 ntAPPRIS P1 TSL 1 (best) BASIC4.8□□□□□ -1.64
DKK3Q9UBP4 SPRR2A-201ENST00000392653 709 ntAPPRIS P1 TSL 1 (best) BASIC4.8□□□□□ -1.64
DKK3Q9UBP4 RPL31P52-201ENST00000407532 367 ntBASIC4.8□□□□□ -1.64
DKK3Q9UBP4 RNA5SP146-201ENST00000410743 123 ntBASIC4.8□□□□□ -1.64
DKK3Q9UBP4 IFNAR2-206ENST00000413881 710 ntTSL 5 BASIC4.8□□□□□ -1.64
DKK3Q9UBP4 AF212831.1-201ENST00000430064 377 ntTSL 3 BASIC4.8□□□□□ -1.64
DKK3Q9UBP4 MTND1P4-201ENST00000435196 415 ntBASIC4.8□□□□□ -1.64
DKK3Q9UBP4 AC241584.1-201ENST00000438469 1241 ntBASIC4.8□□□□□ -1.64
DKK3Q9UBP4 AC122136.1-201ENST00000443971 478 ntTSL 3 BASIC4.8□□□□□ -1.64
DKK3Q9UBP4 AL365271.1-201ENST00000448909 603 ntTSL 3 BASIC4.8□□□□□ -1.64
DKK3Q9UBP4 RNA5SP269-201ENST00000459032 137 ntBASIC4.8□□□□□ -1.64
DKK3Q9UBP4 SCARNA10-201ENST00000459255 330 ntBASIC4.8□□□□□ -1.64
DKK3Q9UBP4 AC010307.1-201ENST00000467206 836 ntBASIC4.8□□□□□ -1.64
DKK3Q9UBP4 AC008897.1-201ENST00000494006 347 ntBASIC4.8□□□□□ -1.64
DKK3Q9UBP4 AC016687.2-201ENST00000504795 541 ntTSL 5 BASIC4.8□□□□□ -1.64
DKK3Q9UBP4 AC091868.1-201ENST00000508746 304 ntBASIC4.8□□□□□ -1.64
DKK3Q9UBP4 AC093281.2-201ENST00000510153 597 ntBASIC4.8□□□□□ -1.64
DKK3Q9UBP4 TET2-AS1-201ENST00000515414 537 ntTSL 5 BASIC4.8□□□□□ -1.64
DKK3Q9UBP4 MYL12AP1-201ENST00000518490 515 ntBASIC4.8□□□□□ -1.64
DKK3Q9UBP4 AC044810.3-201ENST00000527565 589 ntTSL 3 BASIC4.8□□□□□ -1.64
DKK3Q9UBP4 AL356215.1-201ENST00000528366 1102 ntTSL 2 BASIC4.8□□□□□ -1.64
DKK3Q9UBP4 AC022240.1-201ENST00000532065 684 ntTSL 1 (best) BASIC4.8□□□□□ -1.64
DKK3Q9UBP4 OR5AN2P-201ENST00000534535 896 ntBASIC4.8□□□□□ -1.64
DKK3Q9UBP4 SRP54-AS1-203ENST00000556355 603 ntTSL 5 BASIC4.8□□□□□ -1.64
DKK3Q9UBP4 AL110505.1-201ENST00000557062 522 ntTSL 3 BASIC4.8□□□□□ -1.64
DKK3Q9UBP4 AC010601.1-202ENST00000567304 547 ntTSL 4 BASIC4.8□□□□□ -1.64
DKK3Q9UBP4 RN7SL690P-201ENST00000582087 240 ntBASIC4.8□□□□□ -1.64
DKK3Q9UBP4 AC010649.1-203ENST00000592230 454 ntTSL 2 BASIC4.8□□□□□ -1.64
DKK3Q9UBP4 SRD5A3-AS1-209ENST00000598819 552 ntTSL 5 BASIC4.8□□□□□ -1.64
DKK3Q9UBP4 IGKV2OR2-2-201ENST00000605025 300 ntBASIC4.8□□□□□ -1.64
DKK3Q9UBP4 AC024560.3-201ENST00000608482 349 ntBASIC4.8□□□□□ -1.64
DKK3Q9UBP4 RDM1-215ENST00000612980 501 ntTSL 1 (best) BASIC4.8□□□□□ -1.64
DKK3Q9UBP4 WT1-AS_8.1-201ENST00000615200 275 ntBASIC4.8□□□□□ -1.64
DKK3Q9UBP4 ATXN3L-202ENST00000622204 837 ntTSL 5 BASIC4.8□□□□□ -1.64
DKK3Q9UBP4 MYBPC1-205ENST00000536007 3512 ntAPPRIS ALT2 TSL 1 (best) BASIC4.8□□□□□ -1.64
DKK3Q9UBP4 LINC01102-204ENST00000451400 3778 ntTSL 2 BASIC4.8□□□□□ -1.64
DKK3Q9UBP4 DDX20-202ENST00000475700 4332 ntTSL 2 BASIC4.8□□□□□ -1.64
DKK3Q9UBP4 PIGN-245ENST00000640252 7924 ntAPPRIS P1 TSL 1 (best) BASIC4.8□□□□□ -1.64
DKK3Q9UBP4 ATP2C1-205ENST00000504381 3498 ntTSL 2 BASIC4.8□□□□□ -1.64
DKK3Q9UBP4 AFTPH-205ENST00000422803 1525 ntTSL 5 BASIC4.8□□□□□ -1.64
DKK3Q9UBP4 AGTR1-205ENST00000461609 1545 ntAPPRIS P1 TSL 3 BASIC4.8□□□□□ -1.64
DKK3Q9UBP4 IFI16-203ENST00000359709 2609 ntAPPRIS ALT2 TSL 2 BASIC4.8□□□□□ -1.64
DKK3Q9UBP4 ATP8B4-211ENST00000559829 4894 ntAPPRIS P1 TSL 5 BASIC4.8□□□□□ -1.64
DKK3Q9UBP4 AJ009632.2-204ENST00000635621 1401 ntTSL 5 BASIC4.8□□□□□ -1.64
DKK3Q9UBP4 AC139713.2-215ENST00000641428 5037 ntBASIC4.79□□□□□ -1.64
DKK3Q9UBP4 PCDH15-214ENST00000395446 3948 ntTSL 5 BASIC4.79□□□□□ -1.64
DKK3Q9UBP4 MYO9A-209ENST00000564571 8111 ntAPPRIS ALT2 TSL 1 (best) BASIC4.79□□□□□ -1.64
DKK3Q9UBP4 GTPBP8-205ENST00000473129 1518 ntTSL 2 BASIC4.79□□□□□ -1.64
DKK3Q9UBP4 HGF-201ENST00000222390 5989 ntAPPRIS P3 TSL 1 (best) BASIC4.79□□□□□ -1.64
DKK3Q9UBP4 PIGN-242ENST00000640145 4505 ntAPPRIS P1 TSL 5 BASIC4.79□□□□□ -1.64
DKK3Q9UBP4 SLAMF6-201ENST00000368055 730 ntTSL 2 BASIC4.79□□□□□ -1.64
DKK3Q9UBP4 SNORD116-23-201ENST00000384645 92 ntBASIC4.79□□□□□ -1.64
DKK3Q9UBP4 MIR3074-201ENST00000384885 81 ntBASIC4.79□□□□□ -1.64
DKK3Q9UBP4 ATP5F1P4-201ENST00000397288 746 ntBASIC4.79□□□□□ -1.64
DKK3Q9UBP4 RPL23AP47-201ENST00000408017 460 ntBASIC4.79□□□□□ -1.64
DKK3Q9UBP4 RNU2-6P-201ENST00000411404 190 ntBASIC4.79□□□□□ -1.64
DKK3Q9UBP4 REV3L-IT1-201ENST00000411895 382 ntTSL 5 BASIC4.79□□□□□ -1.64
DKK3Q9UBP4 AC005104.1-201ENST00000414896 442 ntTSL 3 BASIC4.79□□□□□ -1.64
DKK3Q9UBP4 AF178030.1-201ENST00000415088 402 ntTSL 2 BASIC4.79□□□□□ -1.64
DKK3Q9UBP4 AL158837.1-201ENST00000417644 452 ntTSL 2 BASIC4.79□□□□□ -1.64
DKK3Q9UBP4 TMBIM7P-201ENST00000418074 855 ntBASIC4.79□□□□□ -1.64
DKK3Q9UBP4 AC068599.1-201ENST00000422558 567 ntTSL 4 BASIC4.79□□□□□ -1.64
DKK3Q9UBP4 AC093843.1-201ENST00000424395 512 ntTSL 2 BASIC4.79□□□□□ -1.64
DKK3Q9UBP4 AL159174.1-202ENST00000425588 442 ntTSL 3 BASIC4.79□□□□□ -1.64
DKK3Q9UBP4 AC064852.1-201ENST00000427571 851 ntTSL 3 BASIC4.79□□□□□ -1.64
DKK3Q9UBP4 LINC00353-201ENST00000435401 685 ntTSL 5 BASIC4.79□□□□□ -1.64
DKK3Q9UBP4 AC023669.2-201ENST00000436266 239 ntTSL 3 BASIC4.79□□□□□ -1.64
DKK3Q9UBP4 USP9YP29-201ENST00000445112 563 ntBASIC4.79□□□□□ -1.64
DKK3Q9UBP4 AL592447.1-201ENST00000447592 540 ntBASIC4.79□□□□□ -1.64
DKK3Q9UBP4 NPM1P49-201ENST00000448027 714 ntBASIC4.79□□□□□ -1.64
DKK3Q9UBP4 AC073264.2-201ENST00000448886 166 ntBASIC4.79□□□□□ -1.64
DKK3Q9UBP4 ZNF114P1-201ENST00000453500 292 ntBASIC4.79□□□□□ -1.64
DKK3Q9UBP4 AC010326.1-201ENST00000462726 602 ntBASIC4.79□□□□□ -1.64
DKK3Q9UBP4 AC112206.1-201ENST00000468416 477 ntBASIC4.79□□□□□ -1.64
DKK3Q9UBP4 AC010683.1-201ENST00000473673 378 ntBASIC4.79□□□□□ -1.64
DKK3Q9UBP4 MRPS33-209ENST00000496958 688 ntAPPRIS P1 TSL 3 BASIC4.79□□□□□ -1.64
DKK3Q9UBP4 SETP14-201ENST00000497538 873 ntBASIC4.79□□□□□ -1.64
DKK3Q9UBP4 AC090071.1-201ENST00000507713 644 ntBASIC4.79□□□□□ -1.64
DKK3Q9UBP4 LINC02144-201ENST00000511417 592 ntTSL 4 BASIC4.79□□□□□ -1.64
DKK3Q9UBP4 AC022915.1-201ENST00000521660 289 ntTSL 3 BASIC4.79□□□□□ -1.64
Retrieved 100 of 98,524 protein–RNA pairs in 107.5 ms