Protein–RNA interactions for Protein: Q9HCM9

TRIM39, E3 ubiquitin-protein ligase TRIM39, humanhuman

Predictions only

Length 518 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM39Q9HCM9 Z84488.1-201ENST00000476099 530 ntTSL 2 BASIC5.21□□□□□ -1.58
TRIM39Q9HCM9 RN7SL727P-201ENST00000482164 296 ntBASIC5.21□□□□□ -1.58
TRIM39Q9HCM9 AC011005.3-201ENST00000491624 395 ntBASIC5.21□□□□□ -1.58
TRIM39Q9HCM9 SNRPCP2-201ENST00000504370 475 ntBASIC5.21□□□□□ -1.58
TRIM39Q9HCM9 AC006499.3-201ENST00000506077 748 ntBASIC5.21□□□□□ -1.58
TRIM39Q9HCM9 AC008780.1-201ENST00000513392 409 ntTSL 5 BASIC5.21□□□□□ -1.58
TRIM39Q9HCM9 AC093305.1-201ENST00000514105 522 ntTSL 5 BASIC5.21□□□□□ -1.58
TRIM39Q9HCM9 AC012400.1-201ENST00000518452 381 ntBASIC5.21□□□□□ -1.58
TRIM39Q9HCM9 OR10G5P-201ENST00000532733 358 ntBASIC5.21□□□□□ -1.58
TRIM39Q9HCM9 KLRC2-204ENST00000536833 771 ntTSL 5 BASIC5.21□□□□□ -1.58
TRIM39Q9HCM9 HAUS8P1-201ENST00000549005 542 ntBASIC5.21□□□□□ -1.58
TRIM39Q9HCM9 AL358335.2-201ENST00000555693 487 ntTSL 3 BASIC5.21□□□□□ -1.58
TRIM39Q9HCM9 HMGN1P30-201ENST00000589286 268 ntBASIC5.21□□□□□ -1.58
TRIM39Q9HCM9 OR7E18P-201ENST00000592589 702 ntBASIC5.21□□□□□ -1.58
TRIM39Q9HCM9 AC008782.1-201ENST00000603386 430 ntBASIC5.21□□□□□ -1.58
TRIM39Q9HCM9 AL024498.1-201ENST00000606522 1100 ntTSL 3 BASIC5.21□□□□□ -1.58
TRIM39Q9HCM9 CEP164P1-207ENST00000608660 504 ntTSL 5 BASIC5.21□□□□□ -1.58
TRIM39Q9HCM9 MIR6863-201ENST00000636112 90 ntBASIC5.21□□□□□ -1.58
TRIM39Q9HCM9 COA1-220ENST00000640232 192 ntAPPRIS ALT2 TSL 3 BASIC5.21□□□□□ -1.58
TRIM39Q9HCM9 ATP2C1-210ENST00000505330 4888 ntAPPRIS ALT2 TSL 2 BASIC5.21□□□□□ -1.58
TRIM39Q9HCM9 PIGK-203ENST00000445065 4318 ntTSL 1 (best) BASIC5.21□□□□□ -1.58
TRIM39Q9HCM9 FOXP2-226ENST00000635638 2598 ntAPPRIS ALT1 TSL 5 BASIC5.21□□□□□ -1.58
TRIM39Q9HCM9 RAD51AP1-202ENST00000352618 2113 ntAPPRIS P3 TSL 1 (best) BASIC5.21□□□□□ -1.58
TRIM39Q9HCM9 LINC01847-202ENST00000523311 1762 ntTSL 5 BASIC5.21□□□□□ -1.58
TRIM39Q9HCM9 RAB18-209ENST00000621805 4894 ntTSL 1 (best) BASIC5.21□□□□□ -1.58
TRIM39Q9HCM9 MAPK10-235ENST00000638225 8941 ntAPPRIS P2 TSL 1 (best) BASIC5.21□□□□□ -1.58
TRIM39Q9HCM9 NOSTRIN-206ENST00000444448 2537 ntTSL 5 BASIC5.21□□□□□ -1.58
TRIM39Q9HCM9 CSMD3-201ENST00000297405 13212 ntAPPRIS P1 TSL 1 (best) BASIC5.2□□□□□ -1.58
TRIM39Q9HCM9 ADGRL3-217ENST00000514591 6297 ntAPPRIS P2 TSL 5 BASIC5.2□□□□□ -1.58
TRIM39Q9HCM9 AC092125.1-201ENST00000562568 1995 ntBASIC5.2□□□□□ -1.58
TRIM39Q9HCM9 OR9Q2-202ENST00000641291 3774 ntAPPRIS P1 BASIC5.2□□□□□ -1.58
TRIM39Q9HCM9 LINC01355-201ENST00000566551 5444 ntBASIC5.2□□□□□ -1.58
TRIM39Q9HCM9 CASP10-204ENST00000346817 3926 ntAPPRIS ALT2 TSL 5 BASIC5.2□□□□□ -1.58
TRIM39Q9HCM9 PROM1-220ENST00000540805 3908 ntAPPRIS ALT2 TSL 5 BASIC5.2□□□□□ -1.58
TRIM39Q9HCM9 FNIP1-202ENST00000307968 6388 ntAPPRIS ALT2 TSL 5 BASIC5.2□□□□□ -1.58
TRIM39Q9HCM9 Y_RNA.9-201ENST00000362354 101 ntBASIC5.2□□□□□ -1.58
TRIM39Q9HCM9 SNORA17.1-201ENST00000362945 126 ntBASIC5.2□□□□□ -1.58
TRIM39Q9HCM9 RNU4-12P-201ENST00000365233 139 ntBASIC5.2□□□□□ -1.58
TRIM39Q9HCM9 AKR1C1-201ENST00000380859 858 ntTSL 3 BASIC5.2□□□□□ -1.58
TRIM39Q9HCM9 ENSAP1-201ENST00000392855 326 ntBASIC5.2□□□□□ -1.58
TRIM39Q9HCM9 RNU4-34P-201ENST00000410431 124 ntBASIC5.2□□□□□ -1.58
TRIM39Q9HCM9 AL359704.1-201ENST00000411586 781 ntBASIC5.2□□□□□ -1.58
TRIM39Q9HCM9 FLJ27354-201ENST00000415584 788 ntTSL 2 BASIC5.2□□□□□ -1.58
TRIM39Q9HCM9 DIAPH3-AS1-201ENST00000422052 428 ntTSL 3 BASIC5.2□□□□□ -1.58
TRIM39Q9HCM9 LINC01074-201ENST00000422527 555 ntTSL 3 BASIC5.2□□□□□ -1.58
TRIM39Q9HCM9 MORF4L2-205ENST00000423833 717 ntTSL 5 BASIC5.2□□□□□ -1.58
TRIM39Q9HCM9 AL035404.2-201ENST00000424418 304 ntTSL 3 BASIC5.2□□□□□ -1.58
TRIM39Q9HCM9 HNRNPA3P4-201ENST00000427514 803 ntBASIC5.2□□□□□ -1.58
TRIM39Q9HCM9 ISCA1P6-201ENST00000427740 390 ntBASIC5.2□□□□□ -1.58
TRIM39Q9HCM9 AC018832.1-201ENST00000428171 566 ntTSL 4 BASIC5.2□□□□□ -1.58
TRIM39Q9HCM9 AL731563.2-201ENST00000431293 291 ntTSL 5 BASIC5.2□□□□□ -1.58
TRIM39Q9HCM9 AL161722.2-201ENST00000434731 981 ntBASIC5.2□□□□□ -1.58
TRIM39Q9HCM9 Z82198.2-201ENST00000434741 567 ntTSL 4 BASIC5.2□□□□□ -1.58
TRIM39Q9HCM9 MTATP6P23-201ENST00000440153 476 ntBASIC5.2□□□□□ -1.58
TRIM39Q9HCM9 AL354936.1-201ENST00000441521 649 ntTSL 5 BASIC5.2□□□□□ -1.58
TRIM39Q9HCM9 BX276092.4-201ENST00000452056 248 ntBASIC5.2□□□□□ -1.58
TRIM39Q9HCM9 AL672167.3-201ENST00000465951 960 ntBASIC5.2□□□□□ -1.58
TRIM39Q9HCM9 RPL31P58-201ENST00000469001 379 ntBASIC5.2□□□□□ -1.58
TRIM39Q9HCM9 AC022034.3-201ENST00000471393 478 ntBASIC5.2□□□□□ -1.58
TRIM39Q9HCM9 RN7SL222P-201ENST00000476452 299 ntBASIC5.2□□□□□ -1.58
TRIM39Q9HCM9 COX6B1P2-201ENST00000489624 230 ntBASIC5.2□□□□□ -1.58
TRIM39Q9HCM9 HMGB1P29-201ENST00000505659 499 ntBASIC5.2□□□□□ -1.58
TRIM39Q9HCM9 AC008638.1-201ENST00000506035 866 ntBASIC5.2□□□□□ -1.58
TRIM39Q9HCM9 LINC02492-204ENST00000515660 584 ntTSL 2 BASIC5.2□□□□□ -1.58
TRIM39Q9HCM9 AC093853.1-201ENST00000515689 483 ntBASIC5.2□□□□□ -1.58
TRIM39Q9HCM9 RNU2-46P-201ENST00000517038 113 ntBASIC5.2□□□□□ -1.58
TRIM39Q9HCM9 AC022616.6-201ENST00000520479 119 ntBASIC5.2□□□□□ -1.58
TRIM39Q9HCM9 AC024940.3-201ENST00000538551 316 ntBASIC5.2□□□□□ -1.58
TRIM39Q9HCM9 LINC02384-208ENST00000546086 565 ntTSL 3 BASIC5.2□□□□□ -1.58
TRIM39Q9HCM9 AL445363.2-202ENST00000555361 435 ntTSL 3 BASIC5.2□□□□□ -1.58
TRIM39Q9HCM9 CLMN-206ENST00000556441 452 ntTSL 5 BASIC5.2□□□□□ -1.58
TRIM39Q9HCM9 AC092325.1-201ENST00000566449 554 ntBASIC5.2□□□□□ -1.58
TRIM39Q9HCM9 LINC00907-208ENST00000593051 1092 ntTSL 1 (best) BASIC5.2□□□□□ -1.58
TRIM39Q9HCM9 SATB1-AS1-207ENST00000593741 955 ntTSL 5 BASIC5.2□□□□□ -1.58
TRIM39Q9HCM9 AL157786.1-204ENST00000594870 506 ntTSL 3 BASIC5.2□□□□□ -1.58
TRIM39Q9HCM9 IMMP1LP1-201ENST00000605170 488 ntBASIC5.2□□□□□ -1.58
TRIM39Q9HCM9 AC121334.2-201ENST00000605387 271 ntBASIC5.2□□□□□ -1.58
TRIM39Q9HCM9 AC018695.5-201ENST00000605872 315 ntBASIC5.2□□□□□ -1.58
TRIM39Q9HCM9 SDR42E1P1-201ENST00000611327 477 ntBASIC5.2□□□□□ -1.58
TRIM39Q9HCM9 RDM1-219ENST00000615378 542 ntTSL 3 BASIC5.2□□□□□ -1.58
TRIM39Q9HCM9 AC068880.5-201ENST00000624331 290 ntBASIC5.2□□□□□ -1.58
TRIM39Q9HCM9 ARHGAP28-205ENST00000531294 2171 ntAPPRIS ALT2 TSL 5 BASIC5.2□□□□□ -1.58
TRIM39Q9HCM9 CYP7A1-201ENST00000301645 2950 ntAPPRIS P1 TSL 1 (best) BASIC5.2□□□□□ -1.58
TRIM39Q9HCM9 KDM3B-209ENST00000542866 3634 ntTSL 2 BASIC5.2□□□□□ -1.58
TRIM39Q9HCM9 OBSCN-210ENST00000570156 26925 ntAPPRIS P1 TSL 5 BASIC5.2□□□□□ -1.58
TRIM39Q9HCM9 LMNTD1-201ENST00000282881 1718 ntAPPRIS P3 TSL 2 BASIC5.2□□□□□ -1.58
TRIM39Q9HCM9 NUP58P1-201ENST00000502546 1738 ntBASIC5.2□□□□□ -1.58
TRIM39Q9HCM9 LIMA1-212ENST00000552491 2652 ntAPPRIS ALT2 TSL 2 BASIC5.2□□□□□ -1.58
TRIM39Q9HCM9 THAP12P5-201ENST00000405864 2275 ntBASIC5.2□□□□□ -1.58
TRIM39Q9HCM9 NCOA7-202ENST00000368357 5521 ntAPPRIS P3 TSL 1 (best) BASIC5.19□□□□□ -1.58
TRIM39Q9HCM9 ERMN-201ENST00000397283 3760 ntTSL 2 BASIC5.19□□□□□ -1.58
TRIM39Q9HCM9 FANCI-201ENST00000300027 4713 ntAPPRIS P3 TSL 5 BASIC5.19□□□□□ -1.58
TRIM39Q9HCM9 PLCB1-210ENST00000612075 6576 ntTSL 5 BASIC5.19□□□□□ -1.58
TRIM39Q9HCM9 CEP162-207ENST00000617909 5095 ntTSL 5 BASIC5.19□□□□□ -1.58
TRIM39Q9HCM9 AC092376.2-201ENST00000622621 4116 ntBASIC5.19□□□□□ -1.58
TRIM39Q9HCM9 OR2L13-202ENST00000641714 1948 ntAPPRIS P1 BASIC5.19□□□□□ -1.58
TRIM39Q9HCM9 SLC1A3-201ENST00000265113 4170 ntAPPRIS P1 TSL 1 (best) BASIC5.19□□□□□ -1.58
TRIM39Q9HCM9 ZNF568-216ENST00000619231 3797 ntAPPRIS P1 TSL 3 BASIC5.19□□□□□ -1.58
TRIM39Q9HCM9 ZNF418-205ENST00000595830 3543 ntAPPRIS P3 TSL 1 (best) BASIC5.19□□□□□ -1.58
TRIM39Q9HCM9 PMCH-201ENST00000329406 766 ntAPPRIS P1 TSL 1 (best) BASIC5.19□□□□□ -1.58
Retrieved 100 of 98,524 protein–RNA pairs in 96.3 ms