Protein–RNA interactions for Protein: Q3V6T2

CCDC88A, Girdin, humanhuman

Predictions only

Length 1,871 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88AQ3V6T2 AC007405.1-203ENST00000623667 932 ntTSL 5 BASIC3.82□□□□□ -1.8
CCDC88AQ3V6T2 CDKL3-210ENST00000523832 1501 ntAPPRIS ALT2 TSL 1 (best) BASIC3.82□□□□□ -1.8
CCDC88AQ3V6T2 SAGE4P-201ENST00000442271 3381 ntBASIC3.82□□□□□ -1.8
CCDC88AQ3V6T2 YWHAZ-201ENST00000353245 2829 ntAPPRIS P1 TSL 1 (best) BASIC3.82□□□□□ -1.8
CCDC88AQ3V6T2 PARPBP-201ENST00000327680 3014 ntAPPRIS P1 TSL 2 BASIC3.82□□□□□ -1.8
CCDC88AQ3V6T2 MTND4P10-201ENST00000446199 1363 ntBASIC3.81□□□□□ -1.8
CCDC88AQ3V6T2 VPS29-202ENST00000447578 996 ntTSL 1 (best) BASIC3.81□□□□□ -1.8
CCDC88AQ3V6T2 AC108938.1-201ENST00000451204 136 ntBASIC3.81□□□□□ -1.8
CCDC88AQ3V6T2 TOPORSLP1-201ENST00000467693 2102 ntBASIC3.81□□□□□ -1.8
CCDC88AQ3V6T2 MFAP3L-206ENST00000506110 548 ntTSL 3 BASIC3.81□□□□□ -1.8
CCDC88AQ3V6T2 TEMN3-AS1-201ENST00000510211 401 ntTSL 3 BASIC3.81□□□□□ -1.8
CCDC88AQ3V6T2 snoU109.6-201ENST00000516831 118 ntBASIC3.81□□□□□ -1.8
CCDC88AQ3V6T2 AC091544.4-201ENST00000555268 342 ntBASIC3.81□□□□□ -1.8
CCDC88AQ3V6T2 BRIP1-202ENST00000577598 3969 ntAPPRIS ALT2 TSL 5 BASIC3.81□□□□□ -1.8
CCDC88AQ3V6T2 STEAP2-205ENST00000394629 2261 ntTSL 1 (best) BASIC3.81□□□□□ -1.8
CCDC88AQ3V6T2 RNF111-212ENST00000561186 4536 ntTSL 2 BASIC3.81□□□□□ -1.8
CCDC88AQ3V6T2 MTCO1P8-201ENST00000416914 1523 ntBASIC3.81□□□□□ -1.8
CCDC88AQ3V6T2 GLRXP1-201ENST00000423261 334 ntBASIC3.81□□□□□ -1.8
CCDC88AQ3V6T2 AC128713.1-201ENST00000471495 306 ntBASIC3.81□□□□□ -1.8
CCDC88AQ3V6T2 MIR4524B-201ENST00000581569 115 ntBASIC3.81□□□□□ -1.8
CCDC88AQ3V6T2 AC087468.1-201ENST00000604365 630 ntBASIC3.81□□□□□ -1.8
CCDC88AQ3V6T2 OR5H14-202ENST00000641380 7323 ntAPPRIS P1 BASIC3.81□□□□□ -1.8
CCDC88AQ3V6T2 LUZP2-208ENST00000620308 4981 ntTSL 5 BASIC3.81□□□□□ -1.8
CCDC88AQ3V6T2 ANP32E-209ENST00000616917 2989 ntTSL 2 BASIC3.81□□□□□ -1.8
CCDC88AQ3V6T2 ATM-203ENST00000452508 12954 ntAPPRIS P1 TSL 1 (best) BASIC3.81□□□□□ -1.8
CCDC88AQ3V6T2 PHF6-205ENST00000625464 4434 ntAPPRIS ALT1 TSL 5 BASIC3.81□□□□□ -1.8
CCDC88AQ3V6T2 NR1H5P-201ENST00000452683 1377 ntBASIC3.8□□□□□ -1.8
CCDC88AQ3V6T2 ZNF678-202ENST00000397097 8212 ntAPPRIS P1 TSL 1 (best) BASIC3.8□□□□□ -1.8
CCDC88AQ3V6T2 LTN1-207ENST00000614971 7756 ntTSL 1 (best) BASIC3.8□□□□□ -1.8
CCDC88AQ3V6T2 LINC00279-201ENST00000413486 473 ntTSL 3 BASIC3.8□□□□□ -1.8
CCDC88AQ3V6T2 AC021205.2-201ENST00000480069 347 ntBASIC3.8□□□□□ -1.8
CCDC88AQ3V6T2 AC016526.2-201ENST00000554225 520 ntTSL 3 BASIC3.8□□□□□ -1.8
CCDC88AQ3V6T2 TGIF1P1-201ENST00000558095 802 ntBASIC3.8□□□□□ -1.8
CCDC88AQ3V6T2 RNASEH2B-AS1-206ENST00000601286 657 ntTSL 5 BASIC3.8□□□□□ -1.8
CCDC88AQ3V6T2 U7.8-201ENST00000619968 63 ntBASIC3.8□□□□□ -1.8
CCDC88AQ3V6T2 ZNF345-213ENST00000589046 3120 ntAPPRIS P1 TSL 1 (best) BASIC3.8□□□□□ -1.8
CCDC88AQ3V6T2 SPAM1-203ENST00000402183 1860 ntAPPRIS P4 TSL 5 BASIC3.8□□□□□ -1.8
CCDC88AQ3V6T2 IFT80-220ENST00000483465 4044 ntTSL 1 (best) BASIC3.8□□□□□ -1.8
CCDC88AQ3V6T2 ZNF680-202ENST00000447137 2159 ntTSL 2 BASIC3.79□□□□□ -1.8
CCDC88AQ3V6T2 LINC00587-201ENST00000374801 590 ntTSL 1 (best) BASIC3.79□□□□□ -1.8
CCDC88AQ3V6T2 AC073136.2-201ENST00000417282 849 ntBASIC3.79□□□□□ -1.8
CCDC88AQ3V6T2 NECAP1P2-201ENST00000455668 727 ntBASIC3.79□□□□□ -1.8
CCDC88AQ3V6T2 AC092666.1-201ENST00000492054 573 ntTSL 4 BASIC3.79□□□□□ -1.8
CCDC88AQ3V6T2 AL356215.1-201ENST00000528366 1102 ntTSL 2 BASIC3.79□□□□□ -1.8
CCDC88AQ3V6T2 ELOCP29-201ENST00000588193 334 ntBASIC3.79□□□□□ -1.8
CCDC88AQ3V6T2 LINC01539-206ENST00000593282 678 ntTSL 4 BASIC3.79□□□□□ -1.8
CCDC88AQ3V6T2 PANK1-202ENST00000322191 2513 ntTSL 1 (best) BASIC3.79□□□□□ -1.8
CCDC88AQ3V6T2 PARP11-203ENST00000427057 4406 ntTSL 1 (best) BASIC3.79□□□□□ -1.8
CCDC88AQ3V6T2 OR11H4-202ENST00000641082 1585 ntAPPRIS P1 BASIC3.79□□□□□ -1.8
CCDC88AQ3V6T2 FIGNL1-202ENST00000395556 3485 ntAPPRIS P1 TSL 2 BASIC3.79□□□□□ -1.8
CCDC88AQ3V6T2 OXR1-206ENST00000449762 2621 ntTSL 1 (best) BASIC3.79□□□□□ -1.8
CCDC88AQ3V6T2 CDC27-207ENST00000531206 3177 ntAPPRIS ALT1 TSL 1 (best) BASIC3.79□□□□□ -1.8
CCDC88AQ3V6T2 PPIP5K2-203ENST00000414217 5842 ntAPPRIS P3 TSL 1 (best) BASIC3.79□□□□□ -1.8
CCDC88AQ3V6T2 RN7SKP222-201ENST00000410651 315 ntBASIC3.79□□□□□ -1.8
CCDC88AQ3V6T2 RANP4-201ENST00000413361 655 ntBASIC3.79□□□□□ -1.8
CCDC88AQ3V6T2 AC010731.3-201ENST00000415029 566 ntTSL 4 BASIC3.79□□□□□ -1.8
CCDC88AQ3V6T2 LINC01828-201ENST00000445514 531 ntTSL 4 BASIC3.79□□□□□ -1.8
CCDC88AQ3V6T2 AL136097.1-201ENST00000456945 913 ntBASIC3.79□□□□□ -1.8
CCDC88AQ3V6T2 AC010401.1-201ENST00000463867 348 ntBASIC3.79□□□□□ -1.8
CCDC88AQ3V6T2 AL035404.1-201ENST00000497982 568 ntBASIC3.79□□□□□ -1.8
CCDC88AQ3V6T2 PAFAH1B2-206ENST00000530272 850 ntTSL 1 (best) BASIC3.79□□□□□ -1.8
CCDC88AQ3V6T2 AC079600.2-201ENST00000550076 130 ntBASIC3.79□□□□□ -1.8
CCDC88AQ3V6T2 H3F3AP1-201ENST00000559984 334 ntBASIC3.79□□□□□ -1.8
CCDC88AQ3V6T2 BDH2P1-201ENST00000602288 736 ntBASIC3.79□□□□□ -1.8
CCDC88AQ3V6T2 RMST_8.1-201ENST00000610287 165 ntBASIC3.79□□□□□ -1.8
CCDC88AQ3V6T2 AC019080.5-201ENST00000624891 757 ntBASIC3.79□□□□□ -1.8
CCDC88AQ3V6T2 ARHGAP28-207ENST00000532996 1859 ntTSL 1 (best) BASIC3.79□□□□□ -1.8
CCDC88AQ3V6T2 ELF2P3-201ENST00000445099 1506 ntBASIC3.79□□□□□ -1.8
CCDC88AQ3V6T2 ZNF682-209ENST00000597972 1538 ntAPPRIS ALT2 TSL 1 (best) BASIC3.79□□□□□ -1.8
CCDC88AQ3V6T2 NLGN1-201ENST00000361589 5092 ntAPPRIS P1 TSL 1 (best) BASIC3.78□□□□□ -1.8
CCDC88AQ3V6T2 UGT8-202ENST00000394511 2448 ntAPPRIS P1 TSL 1 (best) BASIC3.78□□□□□ -1.8
CCDC88AQ3V6T2 SLC30A6-203ENST00000379343 2354 ntTSL 1 (best) BASIC3.78□□□□□ -1.8
CCDC88AQ3V6T2 ZRANB2-201ENST00000254821 2821 ntAPPRIS ALT2 TSL 1 (best) BASIC3.78□□□□□ -1.8
CCDC88AQ3V6T2 AC000403.1-201ENST00000613696 3585 ntBASIC3.78□□□□□ -1.8
CCDC88AQ3V6T2 SNORA70B-201ENST00000384210 135 ntBASIC3.78□□□□□ -1.8
CCDC88AQ3V6T2 RN7SKP220-201ENST00000410611 288 ntBASIC3.78□□□□□ -1.8
CCDC88AQ3V6T2 RPL30P2-201ENST00000414021 291 ntBASIC3.78□□□□□ -1.8
CCDC88AQ3V6T2 AC007161.1-201ENST00000418534 1061 ntTSL 3 BASIC3.78□□□□□ -1.8
CCDC88AQ3V6T2 Z93242.1-201ENST00000427102 353 ntBASIC3.78□□□□□ -1.8
CCDC88AQ3V6T2 TOMM20P4-201ENST00000427861 435 ntBASIC3.78□□□□□ -1.8
CCDC88AQ3V6T2 AL035407.1-201ENST00000429211 571 ntBASIC3.78□□□□□ -1.8
CCDC88AQ3V6T2 KRTAP19-11P-201ENST00000439851 104 ntBASIC3.78□□□□□ -1.8
CCDC88AQ3V6T2 AP001636.2-201ENST00000525517 696 ntBASIC3.78□□□□□ -1.8
CCDC88AQ3V6T2 AC026462.2-201ENST00000565771 286 ntTSL 2 BASIC3.78□□□□□ -1.8
CCDC88AQ3V6T2 SNHG5-221ENST00000624295 632 ntTSL 5 BASIC3.78□□□□□ -1.8
CCDC88AQ3V6T2 FASTKD1-205ENST00000453929 2791 ntTSL 2 BASIC3.78□□□□□ -1.8
CCDC88AQ3V6T2 OFD1P6Y-202ENST00000451061 2724 ntBASIC3.78□□□□□ -1.8
CCDC88AQ3V6T2 SCN3A-201ENST00000283254 9091 ntAPPRIS P3 TSL 1 (best) BASIC3.78□□□□□ -1.8
CCDC88AQ3V6T2 SLC38A9-201ENST00000318672 2369 ntAPPRIS P1 TSL 2 BASIC3.78□□□□□ -1.8
CCDC88AQ3V6T2 LINC02030-201ENST00000492683 1602 ntTSL 5 BASIC3.78□□□□□ -1.8
CCDC88AQ3V6T2 AC090971.4-201ENST00000560291 1800 ntBASIC3.78□□□□□ -1.8
CCDC88AQ3V6T2 RTKN2-201ENST00000315289 2383 ntTSL 2 BASIC3.77□□□□□ -1.81
CCDC88AQ3V6T2 MIR184-201ENST00000384962 84 ntBASIC3.77□□□□□ -1.81
CCDC88AQ3V6T2 TFPI-204ENST00000409676 1119 ntTSL 1 (best) BASIC3.77□□□□□ -1.81
CCDC88AQ3V6T2 LINC00400-201ENST00000425609 547 ntTSL 3 BASIC3.77□□□□□ -1.81
CCDC88AQ3V6T2 AC022018.1-201ENST00000430685 241 ntBASIC3.77□□□□□ -1.81
CCDC88AQ3V6T2 NPM1P13-201ENST00000452663 865 ntBASIC3.77□□□□□ -1.81
CCDC88AQ3V6T2 AL365295.1-201ENST00000454942 514 ntTSL 5 BASIC3.77□□□□□ -1.81
CCDC88AQ3V6T2 IFT74-AS1-201ENST00000456198 405 ntTSL 2 BASIC3.77□□□□□ -1.81
CCDC88AQ3V6T2 FSBP-201ENST00000481490 1158 ntTSL 1 (best) BASIC3.77□□□□□ -1.81
Retrieved 100 of 98,524 protein–RNA pairs in 72.7 ms