Protein–RNA interactions for Protein: P55318

FOXA3, Hepatocyte nuclear factor 3-gamma, humanhuman

Predicted RBP Predictions only

Length 350 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA3P55318 SNORD105B-201ENST00000458770 79 ntBASIC2.44□□□□□ -2.02
FOXA3P55318 AC112204.2-201ENST00000503269 374 ntTSL 2 BASIC2.44□□□□□ -2.02
FOXA3P55318 LINC01957-201ENST00000506392 751 ntTSL 1 (best) BASIC2.44□□□□□ -2.02
FOXA3P55318 AC010460.1-201ENST00000507087 466 ntBASIC2.44□□□□□ -2.02
FOXA3P55318 AC090071.1-201ENST00000507713 644 ntBASIC2.44□□□□□ -2.02
FOXA3P55318 AC147055.1-201ENST00000509261 750 ntBASIC2.44□□□□□ -2.02
FOXA3P55318 AC091180.4-201ENST00000511322 245 ntTSL 2 BASIC2.44□□□□□ -2.02
FOXA3P55318 AC026402.1-201ENST00000513642 170 ntBASIC2.44□□□□□ -2.02
FOXA3P55318 SNORA31.26-201ENST00000517250 137 ntBASIC2.44□□□□□ -2.02
FOXA3P55318 LINCR-0001-203ENST00000524047 545 ntTSL 4 BASIC2.44□□□□□ -2.02
FOXA3P55318 OR4R3P-201ENST00000525084 838 ntBASIC2.44□□□□□ -2.02
FOXA3P55318 AP000873.2-205ENST00000529031 435 ntTSL 2 BASIC2.44□□□□□ -2.02
FOXA3P55318 MIR100HG-221ENST00000534297 572 ntTSL 4 BASIC2.44□□□□□ -2.02
FOXA3P55318 AC009803.3-201ENST00000548457 540 ntTSL 3 BASIC2.44□□□□□ -2.02
FOXA3P55318 AL355096.1-201ENST00000553561 447 ntTSL 3 BASIC2.44□□□□□ -2.02
FOXA3P55318 AC009396.1-201ENST00000553628 1079 ntTSL 2 BASIC2.44□□□□□ -2.02
FOXA3P55318 AC079328.3-201ENST00000558905 691 ntTSL 3 BASIC2.44□□□□□ -2.02
FOXA3P55318 AC074052.2-201ENST00000562516 214 ntTSL 3 BASIC2.44□□□□□ -2.02
FOXA3P55318 LINC01905-202ENST00000588139 459 ntTSL 3 BASIC2.44□□□□□ -2.02
FOXA3P55318 AC097467.3-207ENST00000602249 725 ntTSL 5 BASIC2.44□□□□□ -2.02
FOXA3P55318 AC104785.1-201ENST00000603220 588 ntBASIC2.44□□□□□ -2.02
FOXA3P55318 AL391497.1-201ENST00000608671 547 ntBASIC2.44□□□□□ -2.02
FOXA3P55318 ADPRM-204ENST00000609540 1138 ntTSL 5 BASIC2.44□□□□□ -2.02
FOXA3P55318 AL133370.2-201ENST00000619934 439 ntBASIC2.44□□□□□ -2.02
FOXA3P55318 TATDN1-221ENST00000630259 915 ntTSL 5 BASIC2.44□□□□□ -2.02
FOXA3P55318 PIGX-211ENST00000639474 777 ntAPPRIS P3 TSL 1 (best) BASIC2.44□□□□□ -2.02
FOXA3P55318 OR1S2-202ENST00000641683 941 ntAPPRIS P1 BASIC2.44□□□□□ -2.02
FOXA3P55318 ZFYVE16-202ENST00000505560 6599 ntAPPRIS P1 TSL 1 (best) BASIC2.44□□□□□ -2.02
FOXA3P55318 CCDC158-202ENST00000434846 1728 ntTSL 1 (best) BASIC2.44□□□□□ -2.02
FOXA3P55318 DCLRE1A-202ENST00000369305 4241 ntAPPRIS P1 TSL 5 BASIC2.44□□□□□ -2.02
FOXA3P55318 PKN2-AS1-202ENST00000458097 3542 ntTSL 2 BASIC2.44□□□□□ -2.02
FOXA3P55318 LRRC49-224ENST00000560691 2531 ntTSL 2 BASIC2.43□□□□□ -2.02
FOXA3P55318 DTHD1-205ENST00000507598 2606 ntTSL 1 (best) BASIC2.43□□□□□ -2.02
FOXA3P55318 OR9G4-203ENST00000641581 2603 ntAPPRIS P1 BASIC2.43□□□□□ -2.02
FOXA3P55318 MGAT4C-211ENST00000621808 2582 ntAPPRIS P1 TSL 1 (best) BASIC2.43□□□□□ -2.02
FOXA3P55318 RPL32P23-201ENST00000397237 405 ntBASIC2.43□□□□□ -2.02
FOXA3P55318 EIF5P1-201ENST00000400019 1231 ntBASIC2.43□□□□□ -2.02
FOXA3P55318 ATP5A1P2-201ENST00000412323 255 ntBASIC2.43□□□□□ -2.02
FOXA3P55318 EPGN-202ENST00000413830 1196 ntAPPRIS P1 TSL 1 (best) BASIC2.43□□□□□ -2.02
FOXA3P55318 AC241520.1-201ENST00000422654 1099 ntBASIC2.43□□□□□ -2.02
FOXA3P55318 AC004870.4-201ENST00000424359 360 ntTSL 2 BASIC2.43□□□□□ -2.02
FOXA3P55318 ATP5C1P1-201ENST00000441945 895 ntBASIC2.43□□□□□ -2.02
FOXA3P55318 RPS12P18-201ENST00000442381 270 ntBASIC2.43□□□□□ -2.02
FOXA3P55318 AL035701.1-201ENST00000444038 462 ntTSL 3 BASIC2.43□□□□□ -2.02
FOXA3P55318 GAPDHP27-201ENST00000447427 1020 ntBASIC2.43□□□□□ -2.02
FOXA3P55318 MTND2P8-201ENST00000450555 1025 ntBASIC2.43□□□□□ -2.02
FOXA3P55318 OR6C72P-201ENST00000451403 892 ntBASIC2.43□□□□□ -2.02
FOXA3P55318 LINC01768-201ENST00000453347 476 ntTSL 3 BASIC2.43□□□□□ -2.02
FOXA3P55318 FO393415.3-201ENST00000456424 375 ntTSL 3 BASIC2.43□□□□□ -2.02
FOXA3P55318 HMGN2P13-201ENST00000476476 274 ntBASIC2.43□□□□□ -2.02
FOXA3P55318 GAPDHP36-201ENST00000480688 918 ntBASIC2.43□□□□□ -2.02
FOXA3P55318 AC108748.1-201ENST00000487772 515 ntTSL 3 BASIC2.43□□□□□ -2.02
FOXA3P55318 PANCR-201ENST00000503456 493 ntTSL 5 BASIC2.43□□□□□ -2.02
FOXA3P55318 ATG10-AS1-201ENST00000504846 648 ntBASIC2.43□□□□□ -2.02
FOXA3P55318 AC024587.2-201ENST00000509458 805 ntTSL 3 BASIC2.43□□□□□ -2.02
FOXA3P55318 RN7SKP141-201ENST00000516167 338 ntBASIC2.43□□□□□ -2.02
FOXA3P55318 RN7SKP116-201ENST00000516902 319 ntBASIC2.43□□□□□ -2.02
FOXA3P55318 SEC11B-201ENST00000518383 499 ntBASIC2.43□□□□□ -2.02
FOXA3P55318 RAB9BP1-201ENST00000519581 626 ntBASIC2.43□□□□□ -2.02
FOXA3P55318 AC012413.1-201ENST00000521294 519 ntTSL 2 BASIC2.43□□□□□ -2.02
FOXA3P55318 DEFB109F-202ENST00000542600 509 ntTSL 2 BASIC2.43□□□□□ -2.02
FOXA3P55318 ZFAND6-204ENST00000558087 909 ntAPPRIS P1 TSL 5 BASIC2.43□□□□□ -2.02
FOXA3P55318 AC022523.3-201ENST00000559643 410 ntTSL 3 BASIC2.43□□□□□ -2.02
FOXA3P55318 AC091117.2-201ENST00000560324 542 ntTSL 4 BASIC2.43□□□□□ -2.02
FOXA3P55318 AC007598.2-201ENST00000569490 539 ntTSL 3 BASIC2.43□□□□□ -2.02
FOXA3P55318 MTCO3P24-201ENST00000572729 782 ntBASIC2.43□□□□□ -2.02
FOXA3P55318 AC091691.2-201ENST00000581940 567 ntTSL 4 BASIC2.43□□□□□ -2.02
FOXA3P55318 AC099676.1-201ENST00000608886 657 ntBASIC2.43□□□□□ -2.02
FOXA3P55318 AC055764.2-201ENST00000610089 670 ntBASIC2.43□□□□□ -2.02
FOXA3P55318 AL390240.1-201ENST00000612950 384 ntBASIC2.43□□□□□ -2.02
FOXA3P55318 AC245389.2-201ENST00000616023 576 ntBASIC2.43□□□□□ -2.02
FOXA3P55318 MIR6875-201ENST00000617506 72 ntBASIC2.43□□□□□ -2.02
FOXA3P55318 C9orf153-205ENST00000617985 333 ntAPPRIS ALT2 TSL 5 BASIC2.43□□□□□ -2.02
FOXA3P55318 AC243756.2-201ENST00000618406 463 ntBASIC2.43□□□□□ -2.02
FOXA3P55318 AC242843.1-201ENST00000618702 573 ntBASIC2.43□□□□□ -2.02
FOXA3P55318 EMB-205ENST00000514111 1475 ntAPPRIS ALT2 TSL 2 BASIC2.43□□□□□ -2.02
FOXA3P55318 LRRC49-222ENST00000560158 1898 ntTSL 5 BASIC2.43□□□□□ -2.02
FOXA3P55318 MGAT4C-210ENST00000620241 3194 ntAPPRIS P1 TSL 2 BASIC2.43□□□□□ -2.02
FOXA3P55318 OXR1-206ENST00000449762 2621 ntTSL 1 (best) BASIC2.42□□□□□ -2.02
FOXA3P55318 NEBL-202ENST00000377122 9216 ntTSL 1 (best) BASIC2.42□□□□□ -2.02
FOXA3P55318 IKZF2-213ENST00000457361 9350 ntTSL 5 BASIC2.42□□□□□ -2.02
FOXA3P55318 SGO1-205ENST00000419233 1582 ntTSL 1 (best) BASIC2.42□□□□□ -2.02
FOXA3P55318 AC006042.3-201ENST00000454684 1469 ntBASIC2.42□□□□□ -2.02
FOXA3P55318 LY96-201ENST00000284818 607 ntAPPRIS P1 TSL 1 (best) BASIC2.42□□□□□ -2.02
FOXA3P55318 RPL26-201ENST00000293842 524 ntAPPRIS P1 TSL 1 (best) BASIC2.42□□□□□ -2.02
FOXA3P55318 OR52E6-201ENST00000329322 970 ntAPPRIS P1 BASIC2.42□□□□□ -2.02
FOXA3P55318 RNU1-13P-201ENST00000384499 162 ntBASIC2.42□□□□□ -2.02
FOXA3P55318 SNORA70C-201ENST00000384538 135 ntBASIC2.42□□□□□ -2.02
FOXA3P55318 GLS-203ENST00000409215 632 ntTSL 4 BASIC2.42□□□□□ -2.02
FOXA3P55318 RN7SKP156-201ENST00000410308 342 ntBASIC2.42□□□□□ -2.02
FOXA3P55318 RNA5SP229-201ENST00000410809 99 ntBASIC2.42□□□□□ -2.02
FOXA3P55318 FAM230B-202ENST00000415704 396 ntTSL 3 BASIC2.42□□□□□ -2.02
FOXA3P55318 AL359195.1-201ENST00000416657 339 ntTSL 3 BASIC2.42□□□□□ -2.02
FOXA3P55318 AL355303.1-201ENST00000428920 680 ntTSL 3 BASIC2.42□□□□□ -2.02
FOXA3P55318 VDAC1P3-201ENST00000434069 851 ntBASIC2.42□□□□□ -2.02
FOXA3P55318 OR4C10P-201ENST00000434991 931 ntBASIC2.42□□□□□ -2.02
FOXA3P55318 SETP8-201ENST00000435341 628 ntBASIC2.42□□□□□ -2.02
FOXA3P55318 RPL21P89-201ENST00000444021 467 ntBASIC2.42□□□□□ -2.02
FOXA3P55318 AL157884.3-201ENST00000448273 1184 ntBASIC2.42□□□□□ -2.02
FOXA3P55318 TPT1P13-201ENST00000449760 499 ntBASIC2.42□□□□□ -2.02
Retrieved 100 of 98,524 protein–RNA pairs in 82.7 ms