Protein–RNA interactions for Protein: P49916

LIG3, DNA ligase 3, humanhuman

Predictions only

Length 1,009 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3P49916 AC078795.3-201ENST00000602913 472 ntBASIC5.79□□□□□ -1.48
LIG3P49916 AC064836.2-201ENST00000609491 462 ntBASIC5.79□□□□□ -1.48
LIG3P49916 Z98949.1-212ENST00000609820 837 ntTSL 5 BASIC5.79□□□□□ -1.48
LIG3P49916 RMST_3.1-201ENST00000611651 109 ntBASIC5.79□□□□□ -1.48
LIG3P49916 AC009233.1-201ENST00000616477 371 ntBASIC5.79□□□□□ -1.48
LIG3P49916 AC024614.3-201ENST00000637860 256 ntBASIC5.79□□□□□ -1.48
LIG3P49916 PIGX-210ENST00000639143 831 ntAPPRIS ALT2 TSL 2 BASIC5.79□□□□□ -1.48
LIG3P49916 AC092375.1-202ENST00000639452 404 ntTSL 3 BASIC5.79□□□□□ -1.48
LIG3P49916 TSPAN6-204ENST00000612152 3796 ntTSL 5 BASIC5.79□□□□□ -1.48
LIG3P49916 ZNF569-203ENST00000392150 1918 ntTSL 1 (best) BASIC5.79□□□□□ -1.48
LIG3P49916 SAMD9L-204ENST00000437805 5757 ntAPPRIS P1 TSL 1 (best) BASIC5.79□□□□□ -1.48
LIG3P49916 RWDD2A-201ENST00000369724 3744 ntAPPRIS P1 TSL 1 (best) BASIC5.79□□□□□ -1.48
LIG3P49916 FOXN2-201ENST00000340553 5408 ntAPPRIS P1 TSL 1 (best) BASIC5.79□□□□□ -1.48
LIG3P49916 ERMN-201ENST00000397283 3760 ntTSL 2 BASIC5.79□□□□□ -1.48
LIG3P49916 ZNF726-205ENST00000575986 1522 ntTSL 1 (best) BASIC5.79□□□□□ -1.48
LIG3P49916 SEC31A-201ENST00000264405 3447 ntTSL 2 BASIC5.78□□□□□ -1.48
LIG3P49916 ADGRG4-202ENST00000394141 8971 ntAPPRIS ALT2 TSL 1 (best) BASIC5.78□□□□□ -1.48
LIG3P49916 MYBPC1-209ENST00000547509 3749 ntAPPRIS ALT2 TSL 5 BASIC5.78□□□□□ -1.48
LIG3P49916 TRIM36-209ENST00000514154 1952 ntTSL 1 (best) BASIC5.78□□□□□ -1.48
LIG3P49916 LDAH-211ENST00000541941 3807 ntTSL 2 BASIC5.78□□□□□ -1.48
LIG3P49916 ZNF652P1-201ENST00000442420 1309 ntBASIC5.78□□□□□ -1.48
LIG3P49916 CXCL9-201ENST00000264888 2740 ntAPPRIS P1 TSL 1 (best) BASIC5.78□□□□□ -1.48
LIG3P49916 MYOT-202ENST00000421631 1474 ntTSL 2 BASIC5.78□□□□□ -1.48
LIG3P49916 MYBPC1-221ENST00000551300 3934 ntAPPRIS ALT2 TSL 1 (best) BASIC5.78□□□□□ -1.48
LIG3P49916 MOSPD2-201ENST00000380492 4163 ntAPPRIS P1 TSL 1 (best) BASIC5.78□□□□□ -1.48
LIG3P49916 RNU4-1-201ENST00000363925 141 ntBASIC5.78□□□□□ -1.48
LIG3P49916 SCN2A-203ENST00000375437 8792 ntAPPRIS ALT1 TSL 5 BASIC5.78□□□□□ -1.48
LIG3P49916 RNU6-1226P-201ENST00000384317 107 ntBASIC5.78□□□□□ -1.48
LIG3P49916 Y_RNA.529-201ENST00000384586 119 ntBASIC5.78□□□□□ -1.48
LIG3P49916 RNA5SP91-201ENST00000390902 119 ntBASIC5.78□□□□□ -1.48
LIG3P49916 SSXP10-201ENST00000402595 565 ntBASIC5.78□□□□□ -1.48
LIG3P49916 HIST1H3PS1-201ENST00000404612 417 ntBASIC5.78□□□□□ -1.48
LIG3P49916 R3HDM1-204ENST00000410054 4442 ntTSL 2 BASIC5.78□□□□□ -1.48
LIG3P49916 SDHDP6-201ENST00000414693 480 ntBASIC5.78□□□□□ -1.48
LIG3P49916 AL391704.1-203ENST00000414903 462 ntTSL 3 BASIC5.78□□□□□ -1.48
LIG3P49916 GNG12-AS1-202ENST00000414904 796 ntTSL 3 BASIC5.78□□□□□ -1.48
LIG3P49916 RPL36AP36-201ENST00000418616 301 ntBASIC5.78□□□□□ -1.48
LIG3P49916 RPL31P45-201ENST00000419532 356 ntBASIC5.78□□□□□ -1.48
LIG3P49916 RPL34P3-201ENST00000421454 338 ntBASIC5.78□□□□□ -1.48
LIG3P49916 AL158817.1-201ENST00000422310 933 ntTSL 3 BASIC5.78□□□□□ -1.48
LIG3P49916 AL589986.2-201ENST00000429352 397 ntTSL 2 BASIC5.78□□□□□ -1.48
LIG3P49916 FTLP19-201ENST00000433300 394 ntBASIC5.78□□□□□ -1.48
LIG3P49916 UBE2L5P-201ENST00000436446 465 ntAPPRIS P1 BASIC5.78□□□□□ -1.48
LIG3P49916 AL049734.2-201ENST00000441066 616 ntBASIC5.78□□□□□ -1.48
LIG3P49916 AC104073.1-201ENST00000451988 151 ntBASIC5.78□□□□□ -1.48
LIG3P49916 YWHAEP1-201ENST00000453697 763 ntBASIC5.78□□□□□ -1.48
LIG3P49916 LINC01036-201ENST00000458683 858 ntTSL 3 BASIC5.78□□□□□ -1.48
LIG3P49916 PLGLA-201ENST00000465668 449 ntBASIC5.78□□□□□ -1.48
LIG3P49916 RPS23P6-201ENST00000466136 431 ntBASIC5.78□□□□□ -1.48
LIG3P49916 RPL32P33-201ENST00000487023 394 ntBASIC5.78□□□□□ -1.48
LIG3P49916 AC009120.1-201ENST00000493458 473 ntBASIC5.78□□□□□ -1.48
LIG3P49916 RPL30P11-201ENST00000495304 339 ntBASIC5.78□□□□□ -1.48
LIG3P49916 AC010486.1-201ENST00000511793 424 ntBASIC5.78□□□□□ -1.48
LIG3P49916 IGHVIII-76-1-201ENST00000523776 286 ntBASIC5.78□□□□□ -1.48
LIG3P49916 DEUP1-203ENST00000527307 767 ntTSL 3 BASIC5.78□□□□□ -1.48
LIG3P49916 OR8L1P-201ENST00000534005 955 ntBASIC5.78□□□□□ -1.48
LIG3P49916 AC027544.3-201ENST00000535082 757 ntBASIC5.78□□□□□ -1.48
LIG3P49916 HOMER1-205ENST00000535690 642 ntTSL 1 (best) BASIC5.78□□□□□ -1.48
LIG3P49916 AC010183.2-202ENST00000546791 382 ntTSL 3 BASIC5.78□□□□□ -1.48
LIG3P49916 AC091534.1-202ENST00000549953 468 ntTSL 5 BASIC5.78□□□□□ -1.48
LIG3P49916 AC125611.2-201ENST00000551907 647 ntBASIC5.78□□□□□ -1.48
LIG3P49916 AL445363.2-202ENST00000555361 435 ntTSL 3 BASIC5.78□□□□□ -1.48
LIG3P49916 AC092078.1-201ENST00000558370 325 ntTSL 3 BASIC5.78□□□□□ -1.48
LIG3P49916 AC010463.2-201ENST00000597592 661 ntTSL 5 BASIC5.78□□□□□ -1.48
LIG3P49916 RPL26P30-202ENST00000602923 645 ntBASIC5.78□□□□□ -1.48
LIG3P49916 AC123786.2-201ENST00000603459 275 ntBASIC5.78□□□□□ -1.48
LIG3P49916 AC005191.1-201ENST00000603950 358 ntBASIC5.78□□□□□ -1.48
LIG3P49916 MIR6862-1-201ENST00000613016 70 ntBASIC5.78□□□□□ -1.48
LIG3P49916 MIR6862-2-201ENST00000614755 70 ntBASIC5.78□□□□□ -1.48
LIG3P49916 AC123768.4-201ENST00000616244 701 ntBASIC5.78□□□□□ -1.48
LIG3P49916 RXFP1-203ENST00000343542 2130 ntTSL 1 (best) BASIC5.78□□□□□ -1.48
LIG3P49916 KIAA0408-204ENST00000483725 3284 ntAPPRIS P2 TSL 5 BASIC5.78□□□□□ -1.48
LIG3P49916 TSPAN8-202ENST00000393330 1516 ntAPPRIS P1 TSL 1 (best) BASIC5.78□□□□□ -1.48
LIG3P49916 PHTF2-208ENST00000450574 2516 ntTSL 1 (best) BASIC5.78□□□□□ -1.48
LIG3P49916 AP005432.1-201ENST00000580891 3485 ntBASIC5.78□□□□□ -1.48
LIG3P49916 LRRC39-203ENST00000370138 1466 ntTSL 5 BASIC5.77□□□□□ -1.49
LIG3P49916 PTK2-212ENST00000519419 4439 ntTSL 5 BASIC5.77□□□□□ -1.49
LIG3P49916 MYBPC1-205ENST00000536007 3512 ntAPPRIS ALT2 TSL 1 (best) BASIC5.77□□□□□ -1.49
LIG3P49916 MYBPC1-206ENST00000541119 3533 ntAPPRIS ALT2 TSL 1 (best) BASIC5.77□□□□□ -1.49
LIG3P49916 CLDND1-208ENST00000503004 2818 ntAPPRIS P1 TSL 1 (best) BASIC5.77□□□□□ -1.49
LIG3P49916 ESRRG-204ENST00000361525 5363 ntAPPRIS P1 TSL 5 BASIC5.77□□□□□ -1.49
LIG3P49916 SLCO1A2-201ENST00000307378 7682 ntAPPRIS P1 TSL 1 (best) BASIC5.77□□□□□ -1.49
LIG3P49916 CFAP70-201ENST00000310715 3703 ntAPPRIS P1 TSL 5 BASIC5.77□□□□□ -1.49
LIG3P49916 SULF1-204ENST00000458141 5551 ntAPPRIS P1 TSL 1 (best) BASIC5.77□□□□□ -1.49
LIG3P49916 OR5I1-201ENST00000301532 945 ntAPPRIS P1 BASIC5.77□□□□□ -1.49
LIG3P49916 FHIT-201ENST00000341848 174 ntTSL 3 BASIC5.77□□□□□ -1.49
LIG3P49916 CRISP3-203ENST00000371159 872 ntAPPRIS ALT2 TSL 5 BASIC5.77□□□□□ -1.49
LIG3P49916 RNU6-767P-201ENST00000384132 107 ntBASIC5.77□□□□□ -1.49
LIG3P49916 OPRPN-201ENST00000399575 1040 ntAPPRIS P1 TSL 1 (best) BASIC5.77□□□□□ -1.49
LIG3P49916 RPL31P52-201ENST00000407532 367 ntBASIC5.77□□□□□ -1.49
LIG3P49916 RN7SKP286-201ENST00000410894 299 ntBASIC5.77□□□□□ -1.49
LIG3P49916 AC005162.2-201ENST00000411479 578 ntTSL 4 BASIC5.77□□□□□ -1.49
LIG3P49916 AC114763.2-201ENST00000412593 826 ntTSL 2 BASIC5.77□□□□□ -1.49
LIG3P49916 RPL35AP24-201ENST00000413846 330 ntBASIC5.77□□□□□ -1.49
LIG3P49916 AC104462.1-201ENST00000414565 447 ntTSL 2 BASIC5.77□□□□□ -1.49
LIG3P49916 SNRPFP1-201ENST00000414761 252 ntBASIC5.77□□□□□ -1.49
LIG3P49916 AL662874.1-201ENST00000426065 230 ntBASIC5.77□□□□□ -1.49
LIG3P49916 AC008850.1-201ENST00000427546 362 ntBASIC5.77□□□□□ -1.49
LIG3P49916 AL139824.1-201ENST00000431983 453 ntTSL 3 BASIC5.77□□□□□ -1.49
LIG3P49916 AL442647.1-201ENST00000449485 481 ntTSL 5 BASIC5.77□□□□□ -1.49
Retrieved 100 of 98,524 protein–RNA pairs in 96.6 ms