Protein–RNA interactions for Protein: P39880

CUX1, Homeobox protein cut-like 1, humanhuman

Predictions only

Length 1,505 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1P39880 AC010149.2-201ENST00000637608 315 ntBASIC4.91□□□□□ -1.62
CUX1P39880 AL132656.3-201ENST00000606384 1595 ntBASIC4.91□□□□□ -1.62
CUX1P39880 FIGNL1-202ENST00000395556 3485 ntAPPRIS P1 TSL 2 BASIC4.9□□□□□ -1.62
CUX1P39880 AC107027.3-201ENST00000565095 3473 ntBASIC4.9□□□□□ -1.62
CUX1P39880 SAGE1-201ENST00000324447 2952 ntAPPRIS P2 TSL 5 BASIC4.9□□□□□ -1.62
CUX1P39880 ZNF567-201ENST00000360729 2691 ntTSL 1 (best) BASIC4.9□□□□□ -1.62
CUX1P39880 ZBED6-202ENST00000550078 12481 ntAPPRIS P1 TSL 1 (best) BASIC4.9□□□□□ -1.62
CUX1P39880 EVI2A-202ENST00000461237 1540 ntAPPRIS ALT2 TSL 4 BASIC4.9□□□□□ -1.63
CUX1P39880 CLEC7A-203ENST00000310002 425 ntTSL 1 (best) BASIC4.9□□□□□ -1.63
CUX1P39880 AL672167.1-206ENST00000356293 943 ntBASIC4.9□□□□□ -1.63
CUX1P39880 ZYG11AP1-201ENST00000430329 837 ntBASIC4.9□□□□□ -1.63
CUX1P39880 ARL5AP4-201ENST00000430731 512 ntBASIC4.9□□□□□ -1.63
CUX1P39880 TXNP1-201ENST00000441872 371 ntBASIC4.9□□□□□ -1.63
CUX1P39880 IGHVII-62-1-201ENST00000519283 235 ntBASIC4.9□□□□□ -1.63
CUX1P39880 AP004607.9-201ENST00000618202 316 ntBASIC4.9□□□□□ -1.63
CUX1P39880 AC019080.5-201ENST00000624891 757 ntBASIC4.9□□□□□ -1.63
CUX1P39880 NEGR1-201ENST00000306821 5577 ntTSL 1 (best) BASIC4.9□□□□□ -1.63
CUX1P39880 CC2D2B-210ENST00000636965 3247 ntTSL 5 BASIC4.9□□□□□ -1.63
CUX1P39880 LINC02240-201ENST00000564199 1336 ntTSL 2 BASIC4.89□□□□□ -1.63
CUX1P39880 RNU1-112P-201ENST00000364401 164 ntBASIC4.89□□□□□ -1.63
CUX1P39880 U3.42-201ENST00000408746 214 ntBASIC4.89□□□□□ -1.63
CUX1P39880 RNA5SP293-201ENST00000410527 113 ntBASIC4.89□□□□□ -1.63
CUX1P39880 AC006007.1-201ENST00000422084 672 ntTSL 2 BASIC4.89□□□□□ -1.63
CUX1P39880 SCOC-205ENST00000502535 679 ntAPPRIS ALT1 TSL 3 BASIC4.89□□□□□ -1.63
CUX1P39880 AC109329.2-201ENST00000519658 482 ntBASIC4.89□□□□□ -1.63
CUX1P39880 AC009803.2-201ENST00000550378 665 ntTSL 5 BASIC4.89□□□□□ -1.63
CUX1P39880 AL035413.2-201ENST00000604801 525 ntBASIC4.89□□□□□ -1.63
CUX1P39880 AC112503.1-201ENST00000608436 391 ntBASIC4.89□□□□□ -1.63
CUX1P39880 GCSAML-202ENST00000366489 4030 ntAPPRIS ALT2 TSL 2 BASIC4.89□□□□□ -1.63
CUX1P39880 OR2L5-201ENST00000355281 2429 ntAPPRIS P1 BASIC4.89□□□□□ -1.63
CUX1P39880 PREPL-207ENST00000409957 4703 ntTSL 5 BASIC4.89□□□□□ -1.63
CUX1P39880 FASTKD1-205ENST00000453929 2791 ntTSL 2 BASIC4.89□□□□□ -1.63
CUX1P39880 AC017002.4-201ENST00000604721 1525 ntBASIC4.89□□□□□ -1.63
CUX1P39880 GEN1-201ENST00000317402 9854 ntAPPRIS P1 TSL 2 BASIC4.88□□□□□ -1.63
CUX1P39880 MIR9-1-201ENST00000385198 89 ntBASIC4.88□□□□□ -1.63
CUX1P39880 AC073508.1-201ENST00000428866 656 ntBASIC4.88□□□□□ -1.63
CUX1P39880 AC108078.3-201ENST00000502633 489 ntBASIC4.88□□□□□ -1.63
CUX1P39880 RGS4-207ENST00000527809 817 ntTSL 4 BASIC4.88□□□□□ -1.63
CUX1P39880 AC141273.1-201ENST00000565300 479 ntTSL 5 BASIC4.88□□□□□ -1.63
CUX1P39880 PCDH11X-205ENST00000373094 9179 ntAPPRIS P4 TSL 1 (best) BASIC4.88□□□□□ -1.63
CUX1P39880 EXTL2-201ENST00000370113 2835 ntAPPRIS P1 TSL 1 (best) BASIC4.88□□□□□ -1.63
CUX1P39880 RTKN2-201ENST00000315289 2383 ntTSL 2 BASIC4.88□□□□□ -1.63
CUX1P39880 MBNL1-220ENST00000493459 4205 ntTSL 1 (best) BASIC4.88□□□□□ -1.63
CUX1P39880 ECT2-204ENST00000392692 4158 ntTSL 1 (best) BASIC4.88□□□□□ -1.63
CUX1P39880 GABRG2-214ENST00000639111 11735 ntAPPRIS P1 TSL 1 (best) BASIC4.88□□□□□ -1.63
CUX1P39880 AC008154.2-201ENST00000420268 414 ntTSL 3 BASIC4.87□□□□□ -1.63
CUX1P39880 AL357832.1-201ENST00000427460 420 ntTSL 3 BASIC4.87□□□□□ -1.63
CUX1P39880 MYL8P-204ENST00000431574 518 ntBASIC4.87□□□□□ -1.63
CUX1P39880 SNRPG-206ENST00000454893 527 ntTSL 3 BASIC4.87□□□□□ -1.63
CUX1P39880 AC010401.1-201ENST00000463867 348 ntBASIC4.87□□□□□ -1.63
CUX1P39880 AP002812.4-201ENST00000532139 286 ntBASIC4.87□□□□□ -1.63
CUX1P39880 BMPR1B-203ENST00000440890 5388 ntTSL 2 BASIC4.87□□□□□ -1.63
CUX1P39880 AC000123.3-201ENST00000624029 4975 ntBASIC4.87□□□□□ -1.63
CUX1P39880 MTND5P24-201ENST00000438892 1767 ntBASIC4.87□□□□□ -1.63
CUX1P39880 USP9Y-201ENST00000338981 10036 ntAPPRIS P1 TSL 1 (best) BASIC4.87□□□□□ -1.63
CUX1P39880 OR1E2-201ENST00000248384 972 ntAPPRIS P1 BASIC4.87□□□□□ -1.63
CUX1P39880 ANKRD30BP3-201ENST00000444850 1070 ntBASIC4.87□□□□□ -1.63
CUX1P39880 RAB28P3-201ENST00000448325 597 ntBASIC4.87□□□□□ -1.63
CUX1P39880 UTAT33-202ENST00000449177 565 ntTSL 2 BASIC4.87□□□□□ -1.63
CUX1P39880 AC104687.1-201ENST00000485829 412 ntBASIC4.87□□□□□ -1.63
CUX1P39880 RPS6P4-201ENST00000494693 758 ntBASIC4.87□□□□□ -1.63
CUX1P39880 AC111000.2-201ENST00000507775 550 ntBASIC4.87□□□□□ -1.63
CUX1P39880 SCGB1D5P-201ENST00000515134 247 ntBASIC4.87□□□□□ -1.63
CUX1P39880 LINCR-0001-203ENST00000524047 545 ntTSL 4 BASIC4.87□□□□□ -1.63
CUX1P39880 AC124856.1-201ENST00000600819 896 ntBASIC4.87□□□□□ -1.63
CUX1P39880 R3HDM1-220ENST00000628915 4325 ntTSL 5 BASIC4.87□□□□□ -1.63
CUX1P39880 AC107029.2-201ENST00000462011 2305 ntTSL 2 BASIC4.86□□□□□ -1.63
CUX1P39880 CEP170-202ENST00000366542 6828 ntAPPRIS P1 TSL 5 BASIC4.86□□□□□ -1.63
CUX1P39880 OLFM3-206ENST00000536598 2801 ntTSL 5 BASIC4.86□□□□□ -1.63
CUX1P39880 AL158212.2-201ENST00000369391 460 ntTSL 3 BASIC4.86□□□□□ -1.63
CUX1P39880 LINC00587-201ENST00000374801 590 ntTSL 1 (best) BASIC4.86□□□□□ -1.63
CUX1P39880 AL360093.1-201ENST00000420237 1126 ntTSL 1 (best) BASIC4.86□□□□□ -1.63
CUX1P39880 AC009097.3-201ENST00000563557 1018 ntBASIC4.86□□□□□ -1.63
CUX1P39880 MIR4769-201ENST00000584126 77 ntBASIC4.86□□□□□ -1.63
CUX1P39880 OR8H1-202ENST00000610894 927 ntAPPRIS ALT1 BASIC4.86□□□□□ -1.63
CUX1P39880 AL158196.1-201ENST00000616786 434 ntBASIC4.86□□□□□ -1.63
CUX1P39880 OR2L2-203ENST00000642011 4225 ntAPPRIS P1 BASIC4.86□□□□□ -1.63
CUX1P39880 LTN1-207ENST00000614971 7756 ntTSL 1 (best) BASIC4.86□□□□□ -1.63
CUX1P39880 ZMYM1-203ENST00000373330 4203 ntAPPRIS P1 TSL 1 (best) BASIC4.85□□□□□ -1.63
CUX1P39880 SCN1A-202ENST00000375405 8097 ntAPPRIS P3 TSL 5 BASIC4.85□□□□□ -1.63
CUX1P39880 KCNMB2-210ENST00000617329 2214 ntTSL 2 BASIC4.85□□□□□ -1.63
CUX1P39880 BCLAF1-205ENST00000527536 5371 ntTSL 5 BASIC4.85□□□□□ -1.63
CUX1P39880 D21S2088E-201ENST00000262354 1725 ntTSL 1 (best) BASIC4.85□□□□□ -1.63
CUX1P39880 TENM1-201ENST00000371130 12875 ntAPPRIS P3 TSL 1 (best) BASIC4.85□□□□□ -1.63
CUX1P39880 RNA5SP21-201ENST00000410917 96 ntBASIC4.85□□□□□ -1.63
CUX1P39880 AC098484.2-201ENST00000414339 601 ntTSL 1 (best) BASIC4.85□□□□□ -1.63
CUX1P39880 AL513365.2-201ENST00000423060 529 ntTSL 2 BASIC4.85□□□□□ -1.63
CUX1P39880 YWHAEP4-201ENST00000505390 198 ntBASIC4.85□□□□□ -1.63
CUX1P39880 UNC13C-202ENST00000539562 938 ntTSL 1 (best) BASIC4.85□□□□□ -1.63
CUX1P39880 IDE-202ENST00000371581 4480 ntTSL 2 BASIC4.85□□□□□ -1.63
CUX1P39880 AC021755.1-201ENST00000559747 1447 ntBASIC4.85□□□□□ -1.63
CUX1P39880 ORC4-201ENST00000264169 6598 ntAPPRIS P1 TSL 5 BASIC4.85□□□□□ -1.63
CUX1P39880 CCDC126-203ENST00000410069 890 ntAPPRIS P1 TSL 1 (best) BASIC4.84□□□□□ -1.63
CUX1P39880 AC007563.3-201ENST00000433233 371 ntBASIC4.84□□□□□ -1.63
CUX1P39880 HMGN1P18-201ENST00000457642 277 ntBASIC4.84□□□□□ -1.63
CUX1P39880 AP001025.2-201ENST00000490908 477 ntBASIC4.84□□□□□ -1.63
CUX1P39880 AC021146.1-201ENST00000511202 716 ntBASIC4.84□□□□□ -1.63
CUX1P39880 Y_RNA.673-201ENST00000516306 88 ntBASIC4.84□□□□□ -1.63
CUX1P39880 EIF4A2P3-201ENST00000525903 1055 ntBASIC4.84□□□□□ -1.63
CUX1P39880 AC024610.1-201ENST00000582685 323 ntTSL 3 BASIC4.84□□□□□ -1.63
Retrieved 100 of 98,524 protein–RNA pairs in 102.6 ms